Rw5G013810

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001394
Physical Location & Seq
Reverse (-)
16339217 .. 16342100
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013810.1

Sequence Viewer

Length: 990 bp
ATGGAGAAGCTACCATCACAAGAAGCCACAGCCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATATCTGTCTCTGAAGCACCTATCACTCCTACTGGATTTCGATGGGATCGACAATGGTTAGTTATAAACAAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAACTTGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCAAGAGGGTTGGGAACCTACTAGCAGCTCTTATCTGGAATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCAGACTATCTTGGCAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGACTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCATTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCGCTGTCAGATACCTTCGGTGAATCAAGAGACTGGCATTCGAGGAACTGAACCAAATGAAACTCTGAAGAAATTTCGATCCGATGCAATTGTGTATCCATCTCGGAAACAGCGGAGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAATTACTTTATCTTTGCTGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

329

Amino Acids

37.49

Weight (kDa)

8.53

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 11 - 138 2e-32 MOSC N-terminal beta barrel domain
MOSC PF03473 172 - 305 5e-21 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccI GTMKAC 2 cut(s) 418, 840
AccIII TCCGGA 1 cut(s) 957
AciI CCGC 2 cut(s) 718, 829
AclWI GGATC 2 cut(s) 132, 789
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 5 cut(s) 111, 311, 426, 608, 803
AfaI GTAC 3 cut(s) 204, 288, 600
AgsI TTSAA 3 cut(s) 179, 336, 698
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 10, 208, 252, 374, 440
AluI AGCT 5 cut(s) 10, 208, 252, 374, 440
Alw26I GTCTC 5 cut(s) 43, 91, 558, 740, 931
AlwI GGATC 2 cut(s) 132, 789
Aor13HI TCCGGA 1 cut(s) 957
ApeKI GCWGC 4 cut(s) 249, 356, 437, 702
ApoI RAATTY 1 cut(s) 788
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 748
AvaII GGWCC 1 cut(s) 592
BbvI GCAGC 4 cut(s) 261, 343, 449, 689
BccI CCATC 4 cut(s) 22, 114, 320, 823
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 2 cut(s) 562, 822
BcoDI GTCTC 5 cut(s) 43, 91, 558, 740, 931
BfaI CTAG 4 cut(s) 246, 414, 450, 857
BfuI GTATCC 2 cut(s) 562, 822
BglII AGATCT 1 cut(s) 913
BisI GCNGC 4 cut(s) 250, 357, 438, 703
BlsI GCNGC 4 cut(s) 251, 358, 439, 704
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 3 cut(s) 240, 492, 594
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 5 cut(s) 367, 389, 569, 592, 790
BoxI GACNNNNGTC 1 cut(s) 671
BsaWI WCCGGW 1 cut(s) 957
Bse1I ACTGG 3 cut(s) 59, 115, 754
BseAI TCCGGA 1 cut(s) 957
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 3 cut(s) 59, 115, 754
BseXI GCAGC 4 cut(s) 261, 343, 449, 689
BseYI CCCAGC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 958
BsmAI GTCTC 5 cut(s) 43, 91, 558, 740, 931
BsmBI CGTCTC 1 cut(s) 558
BsmI GAATGC 2 cut(s) 221, 753
Bsp13I TCCGGA 1 cut(s) 957
Bsp143I GATC 3 cut(s) 124, 794, 913
BspACI CCGC 2 cut(s) 718, 829
BspCNI CTCAG 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 957
BspLI GGNNCC 3 cut(s) 240, 492, 594
BspPI GGATC 2 cut(s) 132, 789
BsrI ACTGG 3 cut(s) 59, 115, 754
BssMI GATC 3 cut(s) 124, 794, 913
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 465, 638
BstAPI GCANNNNNTGC 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 707, 883
BstDEI CTNAG 2 cut(s) 361, 555
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 3 cut(s) 127, 797, 916
BstMAI GTCTC 5 cut(s) 43, 91, 558, 740, 931
BstMBI GATC 3 cut(s) 124, 794, 913
BstMWI GCNNNNNNNGC 2 cut(s) 557, 711
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 671
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 4 cut(s) 261, 343, 449, 689
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
BsuI GTATCC 2 cut(s) 562, 822
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 707, 883
Cfr13I GGNCC 1 cut(s) 592
CseI GACGC 1 cut(s) 540
Csp6I GTAC 3 cut(s) 203, 287, 599
CviAII CATG 6 cut(s) 69, 280, 520, 706, 923, 933
CviJI RGCY 7 cut(s) 10, 26, 32, 208, 252, 374, 440
CviKI_1 RGCY 7 cut(s) 10, 26, 32, 208, 252, 374, 440
CviQI GTAC 3 cut(s) 203, 287, 599
DdeI CTNAG 2 cut(s) 361, 555
DpnI GATC 3 cut(s) 126, 796, 915
DpnII GATC 3 cut(s) 124, 794, 913
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 592
Eco57I CTGAAG 5 cut(s) 111, 311, 426, 608, 803
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 6 cut(s) 72, 283, 523, 709, 926, 936
FatI CATG 6 cut(s) 68, 279, 519, 705, 922, 932
FblI GTMKAC 2 cut(s) 418, 840
Fnu4HI GCNGC 4 cut(s) 250, 357, 438, 703
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 250, 357, 438, 703
FspBI CTAG 4 cut(s) 246, 414, 450, 857
GluI GCNGC 4 cut(s) 250, 357, 438, 703
GsaI CCCAGC 1 cut(s) 507
HapII CCGG 1 cut(s) 958
HgaI GACGC 1 cut(s) 540
Hin1II CATG 6 cut(s) 72, 283, 523, 709, 926, 936
HincII GTYRAC 2 cut(s) 419, 634
HindII GTYRAC 2 cut(s) 419, 634
HinfI GANTC 4 cut(s) 304, 475, 739, 869
HpaII CCGG 1 cut(s) 958
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 5 cut(s) 308, 419, 634, 644, 841
Hpy188III TCNNGA 3 cut(s) 260, 743, 958
Hpy8I GTNNAC 5 cut(s) 308, 419, 634, 644, 841
HpyAV CCTTC 4 cut(s) 583, 741, 828, 883
HpyCH4III ACNGT 2 cut(s) 465, 638
HpyCH4V TGCA 5 cut(s) 380, 437, 705, 803, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 711
HpyF3I CTNAG 2 cut(s) 361, 555
Hsp92II CATG 6 cut(s) 72, 283, 523, 709, 926, 936
Kpn2I TCCGGA 1 cut(s) 957
Kzo9I GATC 3 cut(s) 124, 794, 913
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 4 cut(s) 261, 343, 449, 689
LweI GCATC 5 cut(s) 367, 389, 569, 592, 790
MaeI CTAG 4 cut(s) 246, 414, 450, 857
MalI GATC 3 cut(s) 126, 796, 915
MboI GATC 3 cut(s) 124, 794, 913
MboII GAAGA 6 cut(s) 40, 304, 668, 796, 908, 911
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 1 cut(s) 913
MluCI AATT 6 cut(s) 263, 603, 685, 788, 804, 964
MlyI GAGTC 3 cut(s) 313, 469, 863
MmeI TCCRAC 2 cut(s) 552, 889
MnlI CCTC 6 cut(s) 193, 211, 223, 361, 752, 951
Mph1103I ATGCAT 1 cut(s) 382
MroI TCCGGA 1 cut(s) 957
MseI TTAA 4 cut(s) 63, 266, 432, 606
MslI CAYNNNNRTG 2 cut(s) 385, 697
MspA1I CMGCKG 2 cut(s) 720, 829
MspI CCGG 1 cut(s) 958
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 2 cut(s) 221, 753
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 557, 711
NdeII GATC 3 cut(s) 124, 794, 913
NlaIII CATG 6 cut(s) 72, 283, 523, 709, 926, 936
NlaIV GGNNCC 3 cut(s) 240, 492, 594
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 709
PaeI GCATGC 1 cut(s) 709
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 2 cut(s) 221, 753
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 4 cut(s) 251, 358, 439, 704
PleI GAGTC 3 cut(s) 312, 469, 863
PpsI GAGTC 3 cut(s) 312, 469, 863
PpuMI RGGWCCY 1 cut(s) 592
PshAI GACNNNNGTC 1 cut(s) 671
PsiI TTATAA 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 240, 492, 594
PspPI GGNCC 1 cut(s) 592
PspPPI RGGWCCY 1 cut(s) 592
PsuI RGATCY 1 cut(s) 913
RsaI GTAC 3 cut(s) 204, 288, 600
RsaNI GTAC 3 cut(s) 203, 287, 599
RseI CAYNNNNRTG 2 cut(s) 385, 697
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 4 cut(s) 63, 266, 432, 606
SatI GCNGC 4 cut(s) 250, 357, 438, 703
Sau3AI GATC 3 cut(s) 124, 794, 913
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 3 cut(s) 313, 469, 863
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 5 cut(s) 367, 389, 569, 592, 790
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 385, 697
SphI GCATGC 1 cut(s) 709
Sse9I AATT 6 cut(s) 263, 603, 685, 788, 804, 964
SsiI CCGC 2 cut(s) 718, 829
SspMI CTAG 4 cut(s) 246, 414, 450, 857
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 465, 638
TaqI TCGA 5 cut(s) 118, 127, 418, 757, 793
TasI AATT 6 cut(s) 263, 603, 685, 788, 804, 964
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 4 cut(s) 63, 266, 432, 606
Tru9I TTAA 4 cut(s) 63, 266, 432, 606
TseI GCWGC 4 cut(s) 249, 356, 437, 702
TspDTI ATGAA 4 cut(s) 40, 789, 911, 965
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 1 cut(s) 788
XceI RCATGY 1 cut(s) 709
XmiI GTMKAC 2 cut(s) 418, 840
XspI CTAG 4 cut(s) 246, 414, 450, 857
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.