Rh5BG154800

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001394
Physical Location & Seq
Reverse (-)
15867289 .. 15870774
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG154800.1

Sequence Viewer

Length: 942 bp
ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCTCGTGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGGTTAGTAGTAAACTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAGCTGCCAAATGAGGCATTCCTAGAGAATTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAATACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACAGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGATATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACTGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGCAATGGCTCCTCAGAAAAGAGTGAACCGGGTTTGGGAGCAAAGGGTTTCTATGCCAATGAGGCTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

313

Amino Acids

35.18

Weight (kDa)

9.25

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 9 - 135 1.5e-36 MOSC N-terminal beta barrel domain
MOSC PF03473 158 - 273 1.1e-20 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 409, 801
AciI CCGC 2 cut(s) 418, 679
AclWI GGATC 2 cut(s) 123, 529
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 3 cut(s) 302, 417, 569
AfaI GTAC 2 cut(s) 195, 690
AfiI CCNNNNNNNGG 2 cut(s) 685, 904
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 2 cut(s) 295, 659
AjnI CCWGG 2 cut(s) 265, 466
Alw26I GTCTC 2 cut(s) 519, 822
AlwI GGATC 2 cut(s) 123, 529
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 2 cut(s) 443, 936
ApeKI GCWGC 4 cut(s) 199, 347, 428, 811
ApoI RAATTY 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 688
AspLEI GCGC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 899
BanI GGYRCC 1 cut(s) 688
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 186, 334, 440, 823
BccI CCATC 2 cut(s) 265, 311
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 267, 468
BciVI GTATCC 1 cut(s) 507
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 2 cut(s) 519, 822
BfaI CTAG 5 cut(s) 218, 251, 395, 405, 441
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 743
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 931
BisI GCNGC 4 cut(s) 200, 348, 429, 812
BlsI GCNGC 4 cut(s) 201, 349, 430, 813
Bme1390I CCNGG 3 cut(s) 267, 468, 899
BmiI GGNNCC 4 cut(s) 231, 555, 690, 879
BmrFI CCNGG 3 cut(s) 267, 468, 899
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 6 cut(s) 41, 358, 380, 520, 751, 823
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 64, 266
BsaWI WCCGGW 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 685, 904
Bse1I ACTGG 5 cut(s) 50, 106, 531, 563, 715
Bse3DI GCAATG 2 cut(s) 714, 879
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 267, 468
BseDI CCNNGG 2 cut(s) 64, 266
BseGI GGATG 4 cut(s) 276, 280, 535, 605
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 685, 904
BseMI GCAATG 2 cut(s) 714, 879
BseMII CTCAG 3 cut(s) 530, 717, 896
BseNI ACTGG 5 cut(s) 50, 106, 531, 563, 715
BseRI GAGGAG 1 cut(s) 870
BseXI GCAGC 4 cut(s) 186, 334, 440, 823
BshFI GGCC 2 cut(s) 445, 938
BshNI GGYRCC 1 cut(s) 688
BsiSI CCGG 2 cut(s) 754, 898
BslI CCNNNNNNNGG 2 cut(s) 685, 904
BsmAI GTCTC 2 cut(s) 519, 822
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 445, 938
Bsp143I GATC 2 cut(s) 115, 521
BspACI CCGC 2 cut(s) 418, 679
BspANI GGCC 2 cut(s) 445, 938
BspCNI CTCAG 3 cut(s) 529, 718, 895
BspLI GGNNCC 4 cut(s) 231, 555, 690, 879
BspPI GGATC 2 cut(s) 123, 529
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 743
BsrDI GCAATG 2 cut(s) 714, 879
BsrI ACTGG 5 cut(s) 50, 106, 531, 563, 715
BssECI CCNNGG 2 cut(s) 64, 266
BssMI GATC 2 cut(s) 115, 521
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 267, 468
BstAFI CTTAAG 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 180, 936
BstDEI CTNAG 4 cut(s) 352, 516, 726, 882
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 4 cut(s) 276, 280, 535, 605
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 2 cut(s) 118, 524
BstMAI GTCTC 2 cut(s) 519, 822
BstMBI GATC 2 cut(s) 115, 521
BstMWI GCNNNNNNNGC 2 cut(s) 541, 931
BstNI CCWGG 2 cut(s) 267, 468
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 3 cut(s) 265, 466, 897
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 186, 334, 440, 823
BstV2I GAAGAC 1 cut(s) 624
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 445, 938
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 4 cut(s) 276, 280, 535, 605
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 180, 936
CaiI CAGNNNCTG 1 cut(s) 725
CfoI GCGC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 194, 689
CviAII CATG 2 cut(s) 60, 505
CviQI GTAC 2 cut(s) 194, 689
DdeI CTNAG 4 cut(s) 352, 516, 726, 882
DpnI GATC 2 cut(s) 117, 523
DpnII GATC 2 cut(s) 115, 521
Eco147I AGGCCT 1 cut(s) 445
Eco32I GATATC 1 cut(s) 634
Eco57I CTGAAG 3 cut(s) 302, 417, 569
EcoRII CCWGG 2 cut(s) 265, 466
EcoRV GATATC 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 2 cut(s) 63, 508
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 2 cut(s) 59, 504
FauI CCCGC 1 cut(s) 686
FblI GTMKAC 2 cut(s) 409, 801
Fnu4HI GCNGC 4 cut(s) 200, 348, 429, 812
FokI GGATG 4 cut(s) 283, 287, 542, 612
Fsp4HI GCNGC 4 cut(s) 200, 348, 429, 812
FspBI CTAG 5 cut(s) 218, 251, 395, 405, 441
GlaI GCGC 1 cut(s) 534
GluI GCNGC 4 cut(s) 200, 348, 429, 812
HaeIII GGCC 2 cut(s) 445, 938
HapII CCGG 2 cut(s) 754, 898
HhaI GCGC 1 cut(s) 535
Hin1II CATG 2 cut(s) 63, 508
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HincII GTYRAC 3 cut(s) 410, 568, 595
HindII GTYRAC 3 cut(s) 410, 568, 595
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 830
HpaI GTTAAC 2 cut(s) 568, 595
HpaII CCGG 2 cut(s) 754, 898
Hpy166II GTNNAC 7 cut(s) 136, 410, 568, 595, 605, 802, 895
Hpy188I TCNGA 8 cut(s) 19, 388, 436, 490, 549, 616, 760, 885
Hpy188III TCNNGA 2 cut(s) 637, 862
Hpy8I GTNNAC 7 cut(s) 136, 410, 568, 595, 605, 802, 895
HpyAV CCTTC 5 cut(s) 277, 544, 789, 844, 859
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 6 cut(s) 32, 371, 428, 719, 764, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 931
HpyF3I CTNAG 4 cut(s) 352, 516, 726, 882
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 2 cut(s) 63, 508
HspAI GCGC 1 cut(s) 533
KpnI GGTACC 1 cut(s) 692
KspAI GTTAAC 2 cut(s) 568, 595
Kzo9I GATC 2 cut(s) 115, 521
LmnI GCTCC 5 cut(s) 362, 469, 680, 883, 907
Lsp1109I GCAGC 4 cut(s) 186, 334, 440, 823
LweI GCATC 6 cut(s) 41, 358, 380, 520, 751, 823
MaeI CTAG 5 cut(s) 218, 251, 395, 405, 441
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 2 cut(s) 91, 835
MalI GATC 2 cut(s) 117, 523
MboI GATC 2 cut(s) 115, 521
MboII GAAGA 2 cut(s) 31, 629
MluCI AATT 2 cut(s) 69, 223
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 800
MnlI CCTC 7 cut(s) 141, 184, 202, 352, 836, 891, 924
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 5 cut(s) 257, 423, 567, 594, 744
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 2 cut(s) 199, 681
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 754, 898
MspR9I CCNGG 3 cut(s) 267, 468, 899
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 267, 468
MwoI GCNNNNNNNGC 2 cut(s) 541, 931
NciI CCSGG 1 cut(s) 899
NdeII GATC 2 cut(s) 115, 521
NlaIII CATG 2 cut(s) 63, 508
NlaIV GGNNCC 4 cut(s) 231, 555, 690, 879
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 508
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 4 cut(s) 201, 349, 430, 813
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 265, 466
PspGI CCWGG 2 cut(s) 265, 466
PspN4I GGNNCC 4 cut(s) 231, 555, 690, 879
PstNI CAGNNNCTG 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 2 cut(s) 195, 690
RsaNI GTAC 2 cut(s) 194, 689
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 257, 423, 567, 594, 744
SatI GCNGC 4 cut(s) 200, 348, 429, 812
Sau3AI GATC 2 cut(s) 115, 521
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 3 cut(s) 267, 468, 899
SfaNI GCATC 6 cut(s) 41, 358, 380, 520, 751, 823
SfcI CTRYAG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 81, 743
SmoI CTYRAG 2 cut(s) 81, 743
Sse9I AATT 2 cut(s) 69, 223
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 418, 679
SspMI CTAG 5 cut(s) 218, 251, 395, 405, 441
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 265, 466, 897
TaiI ACGT 1 cut(s) 775
TaqI TCGA 3 cut(s) 118, 374, 409
TasI AATT 2 cut(s) 69, 223
Tru1I TTAA 5 cut(s) 257, 423, 567, 594, 744
Tru9I TTAA 5 cut(s) 257, 423, 567, 594, 744
TscAI CASTG 1 cut(s) 531
TseI GCWGC 4 cut(s) 199, 347, 428, 811
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 743
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 409, 801
XspI CTAG 5 cut(s) 218, 251, 395, 405, 441
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.