Rroxscaffold_1G00057220

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001394
Physical Location & Seq
Forward (+)
79201196 .. 79204479
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057220.1

Sequence Viewer

Length: 933 bp
ATGCCGTGGAATTTCAGTTTCTCAAGCTCATGTTACTCCTACTGGTATAACCAACCTCACCATTTCTCCCCCTACTTGTTCTACTTGTTGTTGAGGCCCACAAAGAAAGGTTTTCGTTGGGATCGACAATGGTTAGTAGTAAACTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTGCAGCTGCCAAATGAGGCATTCCTAGAGAATTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGATAGATATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCTCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACCGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTGTGTCCTCAAGATGGTCTCTTCTGCTAATGAAGCAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

310

Amino Acids

35.04

Weight (kDa)

8.47

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 34 - 137 2.7e-23 MOSC N-terminal beta barrel domain
MOSC PF03473 160 - 296 6.7e-22 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 694
AccB1I GGYRCC 1 cut(s) 694
AccI GTMKAC 2 cut(s) 415, 807
AciI CCGC 1 cut(s) 424
AclWI GGATC 2 cut(s) 129, 535
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 3 cut(s) 308, 423, 575
AfaI GTAC 2 cut(s) 304, 696
AfiI CCNNNNNNNGG 1 cut(s) 901
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 1 cut(s) 665
AjnI CCWGG 2 cut(s) 271, 472
Alw26I GTCTC 3 cut(s) 525, 828, 910
AlwI GGATC 2 cut(s) 129, 535
AlwNI CAGNNNCTG 1 cut(s) 731
AoxI GGCC 2 cut(s) 95, 449
ApeKI GCWGC 7 cut(s) 202, 205, 353, 434, 817, 923, 926
ApoI RAATTY 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 694
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 630
BbvI GCAGC 5 cut(s) 192, 214, 340, 446, 829
BccI CCATC 3 cut(s) 271, 317, 895
BciT130I CCWGG 2 cut(s) 273, 474
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 3 cut(s) 525, 828, 910
BfaI CTAG 5 cut(s) 224, 257, 401, 411, 447
BfmI CTRYAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 749
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 1 cut(s) 880
BisI GCNGC 7 cut(s) 203, 206, 354, 435, 818, 924, 927
BlsI GCNGC 7 cut(s) 204, 207, 355, 436, 819, 925, 928
Bme1390I CCNGG 2 cut(s) 273, 474
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 237, 561, 696
BmrFI CCNGG 2 cut(s) 273, 474
BmsI GCATC 5 cut(s) 364, 386, 526, 757, 829
BpiI GAAGAC 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 7, 319, 881
BsaBI GATNNNNATC 2 cut(s) 501, 638
BsaI GGTCTC 1 cut(s) 910
BsaJI CCNNGG 2 cut(s) 5, 272
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 870, 900
Bsc4I CCNNNNNNNGG 1 cut(s) 901
Bse1I ACTGG 4 cut(s) 47, 537, 569, 721
Bse3DI GCAATG 1 cut(s) 720
Bse8I GATNNNNATC 2 cut(s) 501, 638
BseBI CCWGG 2 cut(s) 273, 474
BseDI CCNNGG 2 cut(s) 5, 272
BseGI GGATG 4 cut(s) 282, 286, 541, 611
BseJI GATNNNNATC 2 cut(s) 501, 638
BseLI CCNNNNNNNGG 1 cut(s) 901
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 536, 723
BseNI ACTGG 4 cut(s) 47, 537, 569, 721
BseXI GCAGC 5 cut(s) 192, 214, 340, 446, 829
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 97, 451
BshNI GGYRCC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 901
BsmAI GTCTC 3 cut(s) 525, 828, 910
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 2 cut(s) 97, 451
Bso31I GGTCTC 1 cut(s) 910
Bsp143I GATC 3 cut(s) 121, 527, 880
BspACI CCGC 1 cut(s) 424
BspANI GGCC 2 cut(s) 97, 451
BspCNI CTCAG 2 cut(s) 535, 724
BspLI GGNNCC 3 cut(s) 237, 561, 696
BspPI GGATC 2 cut(s) 129, 535
BspT107I GGYRCC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 910
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 4 cut(s) 47, 537, 569, 721
BssECI CCNNGG 2 cut(s) 5, 272
BssMI GATC 3 cut(s) 121, 527, 880
Bst2UI CCWGG 2 cut(s) 273, 474
Bst6I CTCTTC 1 cut(s) 913
BstAFI CTTAAG 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 358, 522, 732
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 4 cut(s) 282, 286, 541, 611
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 3 cut(s) 124, 530, 883
BstMAI GTCTC 3 cut(s) 525, 828, 910
BstMBI GATC 3 cut(s) 121, 527, 880
BstMWI GCNNNNNNNGC 2 cut(s) 547, 920
BstNI CCWGG 2 cut(s) 273, 474
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 271, 472
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 5 cut(s) 192, 214, 340, 446, 829
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 97, 451
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 4 cut(s) 282, 286, 541, 611
BtsIMutI CAGTG 1 cut(s) 530
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 303, 695
CviAII CATG 2 cut(s) 30, 511
CviQI GTAC 2 cut(s) 303, 695
DdeI CTNAG 3 cut(s) 358, 522, 732
DpnI GATC 3 cut(s) 123, 529, 882
DpnII GATC 3 cut(s) 121, 527, 880
Eam1104I CTCTTC 1 cut(s) 913
EarI CTCTTC 1 cut(s) 913
Eco147I AGGCCT 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 910
Eco32I GATATC 1 cut(s) 640
Eco57I CTGAAG 3 cut(s) 308, 423, 575
EcoRII CCWGG 2 cut(s) 271, 472
EcoRV GATATC 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 379
FaeI CATG 2 cut(s) 33, 514
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 29, 510
FblI GTMKAC 2 cut(s) 415, 807
Fnu4HI GCNGC 7 cut(s) 203, 206, 354, 435, 818, 924, 927
FokI GGATG 4 cut(s) 289, 293, 548, 618
Fsp4HI GCNGC 7 cut(s) 203, 206, 354, 435, 818, 924, 927
FspBI CTAG 5 cut(s) 224, 257, 401, 411, 447
GlaI GCGC 1 cut(s) 540
GluI GCNGC 7 cut(s) 203, 206, 354, 435, 818, 924, 927
HaeIII GGCC 2 cut(s) 97, 451
HapII CCGG 1 cut(s) 760
HhaI GCGC 1 cut(s) 541
Hin1II CATG 2 cut(s) 33, 514
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 3 cut(s) 416, 574, 601
HindII GTYRAC 3 cut(s) 416, 574, 601
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 836
HpaI GTTAAC 2 cut(s) 574, 601
HpaII CCGG 1 cut(s) 760
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 7 cut(s) 142, 305, 416, 574, 601, 611, 808
Hpy188I TCNGA 6 cut(s) 394, 442, 496, 555, 622, 766
Hpy188III TCNNGA 3 cut(s) 643, 868, 898
Hpy8I GTNNAC 7 cut(s) 142, 305, 416, 574, 601, 611, 808
HpyAV CCTTC 5 cut(s) 283, 550, 795, 850, 865
HpyCH4IV ACGT 1 cut(s) 778
HpyCH4V TGCA 5 cut(s) 202, 377, 434, 725, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 920
HpyF3I CTNAG 3 cut(s) 358, 522, 732
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 2 cut(s) 33, 514
HspAI GCGC 1 cut(s) 539
KpnI GGTACC 1 cut(s) 698
KspAI GTTAAC 2 cut(s) 574, 601
Kzo9I GATC 3 cut(s) 121, 527, 880
LmnI GCTCC 2 cut(s) 368, 475
Lsp1109I GCAGC 5 cut(s) 192, 214, 340, 446, 829
LweI GCATC 5 cut(s) 364, 386, 526, 757, 829
MaeI CTAG 5 cut(s) 224, 257, 401, 411, 447
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 2 cut(s) 32, 841
MalI GATC 3 cut(s) 123, 529, 882
MboI GATC 3 cut(s) 121, 527, 880
MboII GAAGA 2 cut(s) 635, 900
MflI RGATCY 1 cut(s) 880
MluCI AATT 2 cut(s) 10, 229
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 2 cut(s) 806, 856
MnlI CCTC 8 cut(s) 66, 87, 147, 190, 208, 358, 842, 905
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 5 cut(s) 263, 429, 573, 600, 750
MslI CAYNNNNRTG 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 205
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 1 cut(s) 760
MspR9I CCNGG 2 cut(s) 273, 474
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 2 cut(s) 273, 474
MwoI GCNNNNNNNGC 2 cut(s) 547, 920
NdeII GATC 3 cut(s) 121, 527, 880
NlaIII CATG 2 cut(s) 33, 514
NlaIV GGNNCC 3 cut(s) 237, 561, 696
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 514
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 7 cut(s) 204, 207, 355, 436, 819, 925, 928
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
Psp6I CCWGG 2 cut(s) 271, 472
PspGI CCWGG 2 cut(s) 271, 472
PspN4I GGNNCC 3 cut(s) 237, 561, 696
PspPI GGNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 880
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 304, 696
RsaNI GTAC 2 cut(s) 303, 695
RseI CAYNNNNRTG 1 cut(s) 382
SalI GTCGAC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 263, 429, 573, 600, 750
SatI GCNGC 7 cut(s) 203, 206, 354, 435, 818, 924, 927
Sau3AI GATC 3 cut(s) 121, 527, 880
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 2 cut(s) 273, 474
SfaNI GCATC 5 cut(s) 364, 386, 526, 757, 829
SfcI CTRYAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 4 cut(s) 22, 298, 749, 896
SmoI CTYRAG 4 cut(s) 22, 298, 749, 896
Sse9I AATT 2 cut(s) 10, 229
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 1 cut(s) 424
SspMI CTAG 5 cut(s) 224, 257, 401, 411, 447
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 271, 472
TaiI ACGT 1 cut(s) 781
TaqI TCGA 3 cut(s) 124, 380, 415
TasI AATT 2 cut(s) 10, 229
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 5 cut(s) 263, 429, 573, 600, 750
Tru9I TTAA 5 cut(s) 263, 429, 573, 600, 750
TscAI CASTG 1 cut(s) 537
TseI GCWGC 7 cut(s) 202, 205, 353, 434, 817, 923, 926
TspDTI ATGAA 1 cut(s) 933
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 749
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 514
XmiI GTMKAC 2 cut(s) 415, 807
XspI CTAG 5 cut(s) 224, 257, 401, 411, 447
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.