Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

62436030 .. 62438347

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTCTCCGATATGTATCCATACATGCTATTATCTCAGGGATCACTGGATGAGCTAAATGAGCTTCTGAAGGAATCCATACCAGTTAACAGATTTAGAGCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACGGATATCATGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTGCTGGCATTGCAAGAACTGAGCCAGCAGACACTTTTAAGAAAATCCGATCTGATGCAATTTTACGTCCAACAGGAAAACAGCAGGGAAGGCATCTTGTTTGGAGAGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGGTTGCAATGGCTCCTCAGAAGAGAGTGAACCGGGTTTGGGAGCAAAGGGTTTCTATGCCAATGAGGTTGGCCTGAGGGTGAGAATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

8.36

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC	PF03473	2 - 98	1.3e-18	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	208
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	148, 205, 416
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	5 cut(s)	55, 64, 169, 190, 227
AluI	AGCT	5 cut(s)	55, 64, 169, 190, 227
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	227
Asp718I	GGTACC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	210, 391
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	271, 328
BpiI	GAAGAC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 205, 416
Bse1I	ACTGG	2 cut(s)	51, 83
Bse21I	CCTNAGG	1 cut(s)	452
Bse3DI	GCAATG	2 cut(s)	234, 391
Bse8I	GATNNNNATC	1 cut(s)	15
BseGI	GGATG	2 cut(s)	55, 125
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	148, 205, 416
BseMI	GCAATG	2 cut(s)	234, 391
BseMII	CTCAG	4 cut(s)	50, 237, 408, 443
BseNI	ACTGG	2 cut(s)	51, 83
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	148, 205, 416
BsmAI	GTCTC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	41, 275
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	4 cut(s)	49, 238, 407, 444
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	210, 391
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	234, 391
BsrI	ACTGG	2 cut(s)	51, 83
BssMI	GATC	2 cut(s)	41, 275
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	232, 252
BstDEI	CTNAG	4 cut(s)	36, 246, 394, 452
BstF5I	GGATG	2 cut(s)	55, 125
BstKTI	GATC	2 cut(s)	44, 278
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	2 cut(s)	41, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 236, 316
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	55, 125
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	232, 252
CciI	TCATGA	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	25, 157
CviJI	RGCY	9 cut(s)	55, 64, 101, 169, 190, 227, 250, 390, 450
CviKI_1	RGCY	9 cut(s)	55, 64, 101, 169, 190, 227, 250, 390, 450
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	4 cut(s)	36, 246, 394, 452
DpnI	GATC	2 cut(s)	43, 277
DpnII	GATC	2 cut(s)	41, 275
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	154
FaeI	CATG	2 cut(s)	28, 160
FaiI	YATR	8 cut(s)	14, 22, 26, 80, 145, 158, 193, 435
FatI	CATG	2 cut(s)	24, 156
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	62, 132
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	2 cut(s)	28, 160
HincII	GTYRAC	2 cut(s)	88, 115
HindII	GTYRAC	2 cut(s)	88, 115
HinfI	GANTC	2 cut(s)	74, 335
HpaI	GTTAAC	2 cut(s)	88, 115
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	88, 115, 125, 407
Hpy188I	TCNGA	6 cut(s)	10, 69, 136, 275, 280, 397
Hpy188III	TCNNGA	2 cut(s)	157, 367
Hpy8I	GTNNAC	4 cut(s)	88, 115, 125, 407
HpyAV	CCTTC	4 cut(s)	64, 309, 349, 364
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	239, 284, 344, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 236, 316
HpyF3I	CTNAG	4 cut(s)	36, 246, 394, 452
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	2 cut(s)	28, 160
KpnI	GGTACC	1 cut(s)	212
KspAI	GTTAAC	2 cut(s)	88, 115
Kzo9I	GATC	2 cut(s)	41, 275
LmnI	GCTCC	3 cut(s)	200, 395, 419
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	271, 328
MaeII	ACGT	1 cut(s)	292
MalI	GATC	2 cut(s)	43, 277
MboI	GATC	2 cut(s)	41, 275
MboII	GAAGA	2 cut(s)	149, 410
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	320, 355
MnlI	CCTC	5 cut(s)	341, 371, 403, 436, 447
MseI	TTAA	3 cut(s)	87, 114, 264
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	61, 236, 316
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	41, 275
NlaIII	CATG	2 cut(s)	28, 160
NlaIV	GGNNCC	2 cut(s)	210, 391
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	210, 391
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	87, 114, 264
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	41, 275
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	271, 328
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	409
TaiI	ACGT	1 cut(s)	295
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	87, 114, 264
Tru9I	TTAA	3 cut(s)	87, 114, 264
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	132, 164
TspRI	CASTG	1 cut(s)	51
XceI	RCATGY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.