Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

79204951 .. 79208209

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGAAGCTACCATCACAAGAAGCCACAGCCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATATCGGTCTCTGAAGCACCTATCACTCCTACTGGATTTCGATGGGATCGACAATGGTTAGTTATAAATGAAAAAAGGAGAGCATATACTCAAAGAGTTGCACCAAAGCTTGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGGTTGGGAACCTACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCCGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCAGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGATTGTGAACCATTTTCGGAAGATTTATGGACAGATATCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCGCTGTCAGATACCTACGGTGAATCAAGAGACTGGCATTCGAGGAACTGAGCCAAATGAAACTCTGAAGAAATTTCGATCGGATGCAATTGTGTATCCATCTCGGAAACAGCGGAGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGAAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTACCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

321

Amino Acids

36.33

Weight (kDa)

6.06

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	11 - 138	3.5e-32	MOSC N-terminal beta barrel domain
MOSC	PF03473	172 - 305	3.1e-21	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	418, 840
AciI	CCGC	2 cut(s)	718, 829
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	5 cut(s)	111, 311, 426, 608, 803
AfaI	GTAC	4 cut(s)	204, 288, 600, 957
AfiI	CCNNNNNNNGG	1 cut(s)	934
AgsI	TTSAA	2 cut(s)	336, 698
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	10, 187, 208, 252, 374, 440
AluI	AGCT	6 cut(s)	10, 187, 208, 252, 374, 440
Alw26I	GTCTC	5 cut(s)	43, 91, 480, 558, 740
AlwI	GGATC	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	249, 356, 437, 702
ApoI	RAATTY	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	592
BbvI	GCAGC	4 cut(s)	261, 343, 449, 689
BccI	CCATC	4 cut(s)	22, 114, 320, 823
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	562, 822
BcoDI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BfaI	CTAG	5 cut(s)	227, 246, 414, 450, 857
BfuI	GTATCC	2 cut(s)	562, 822
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	4 cut(s)	250, 357, 438, 703
BlsI	GCNGC	4 cut(s)	251, 358, 439, 704
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	3 cut(s)	240, 492, 594
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	5 cut(s)	367, 389, 569, 592, 790
BsaI	GGTCTC	2 cut(s)	91, 480
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse1I	ACTGG	4 cut(s)	59, 115, 485, 754
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	289, 805
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMII	CTCAG	2 cut(s)	569, 756
BseNI	ACTGG	4 cut(s)	59, 115, 485, 754
BseXI	GCAGC	4 cut(s)	261, 343, 449, 689
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	959
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmAI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	2 cut(s)	221, 753
Bso31I	GGTCTC	2 cut(s)	91, 480
Bsp143I	GATC	3 cut(s)	124, 794, 913
BspACI	CCGC	2 cut(s)	718, 829
BspCNI	CTCAG	2 cut(s)	568, 757
BspLI	GGNNCC	3 cut(s)	240, 492, 594
BspPI	GGATC	1 cut(s)	132
BspTNI	GGTCTC	2 cut(s)	91, 480
BsrI	ACTGG	4 cut(s)	59, 115, 485, 754
BssMI	GATC	3 cut(s)	124, 794, 913
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	465, 611, 736
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	189, 707, 883
BstDEI	CTNAG	3 cut(s)	361, 555, 765
BstF5I	GGATG	2 cut(s)	289, 805
BstKTI	GATC	3 cut(s)	127, 797, 916
BstMAI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BstMBI	GATC	3 cut(s)	124, 794, 913
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 711
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	4 cut(s)	261, 343, 449, 689
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	2 cut(s)	562, 822
BtsCI	GGATG	2 cut(s)	289, 805
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	189, 707, 883
Cfr13I	GGNCC	1 cut(s)	592
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	203, 287, 599, 956
CviAII	CATG	6 cut(s)	69, 280, 520, 706, 923, 934
CviJI	RGCY	9 cut(s)	10, 26, 32, 187, 208, 252, 374, 440, 769
CviKI_1	RGCY	9 cut(s)	10, 26, 32, 187, 208, 252, 374, 440, 769
CviQI	GTAC	4 cut(s)	203, 287, 599, 956
DdeI	CTNAG	3 cut(s)	361, 555, 765
DpnI	GATC	3 cut(s)	126, 796, 915
DpnII	GATC	3 cut(s)	124, 794, 913
Eco31I	GGTCTC	2 cut(s)	91, 480
Eco32I	GATATC	2 cut(s)	81, 673
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	5 cut(s)	111, 311, 426, 608, 803
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	2 cut(s)	81, 673
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	6 cut(s)	72, 283, 523, 709, 926, 937
FatI	CATG	6 cut(s)	68, 279, 519, 705, 922, 933
FblI	GTMKAC	2 cut(s)	418, 840
Fnu4HI	GCNGC	4 cut(s)	250, 357, 438, 703
FokI	GGATG	2 cut(s)	296, 812
Fsp4HI	GCNGC	4 cut(s)	250, 357, 438, 703
FspBI	CTAG	5 cut(s)	227, 246, 414, 450, 857
GluI	GCNGC	4 cut(s)	250, 357, 438, 703
GsaI	CCCAGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	6 cut(s)	72, 283, 523, 709, 926, 937
HincII	GTYRAC	2 cut(s)	419, 634
HindII	GTYRAC	2 cut(s)	419, 634
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	304, 739, 869
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	5 cut(s)	308, 419, 634, 644, 841
Hpy188III	TCNNGA	1 cut(s)	743
Hpy8I	GTNNAC	5 cut(s)	308, 419, 634, 644, 841
HpyAV	CCTTC	3 cut(s)	583, 828, 883
HpyCH4III	ACNGT	3 cut(s)	465, 611, 736
HpyCH4V	TGCA	6 cut(s)	179, 380, 437, 705, 803, 864
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 711
HpyF3I	CTNAG	3 cut(s)	361, 555, 765
Hsp92II	CATG	6 cut(s)	72, 283, 523, 709, 926, 937
Kzo9I	GATC	3 cut(s)	124, 794, 913
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	4 cut(s)	261, 343, 449, 689
LweI	GCATC	5 cut(s)	367, 389, 569, 592, 790
MaeI	CTAG	5 cut(s)	227, 246, 414, 450, 857
MalI	GATC	3 cut(s)	126, 796, 915
MboI	GATC	3 cut(s)	124, 794, 913
MboII	GAAGA	6 cut(s)	40, 304, 668, 796, 908, 911
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	4 cut(s)	603, 685, 788, 804
MlyI	GAGTC	2 cut(s)	313, 863
MmeI	TCCRAC	3 cut(s)	420, 552, 889
MnlI	CCTC	7 cut(s)	193, 211, 223, 361, 752, 938, 952
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	4 cut(s)	63, 266, 432, 606
MslI	CAYNNNNRTG	2 cut(s)	385, 697
MspA1I	CMGCKG	2 cut(s)	720, 829
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	2 cut(s)	221, 753
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	557, 711
NdeII	GATC	3 cut(s)	124, 794, 913
NlaIII	CATG	6 cut(s)	72, 283, 523, 709, 926, 937
NlaIV	GGNNCC	3 cut(s)	240, 492, 594
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	709
PaeI	GCATGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	2 cut(s)	221, 753
PfeI	GAWTC	1 cut(s)	739
PkrI	GCNGC	4 cut(s)	251, 358, 439, 704
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	2 cut(s)	312, 863
PpsI	GAGTC	2 cut(s)	312, 863
PpuMI	RGGWCCY	1 cut(s)	592
PsiI	TTATAA	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	240, 492, 594
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	913
PvuI	CGATCG	1 cut(s)	797
RsaI	GTAC	4 cut(s)	204, 288, 600, 957
RsaNI	GTAC	4 cut(s)	203, 287, 599, 956
RseI	CAYNNNNRTG	2 cut(s)	385, 697
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	63, 266, 432, 606
SatI	GCNGC	4 cut(s)	250, 357, 438, 703
Sau3AI	GATC	3 cut(s)	124, 794, 913
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	313, 863
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	5 cut(s)	367, 389, 569, 592, 790
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	2 cut(s)	385, 697
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	4 cut(s)	603, 685, 788, 804
SsiI	CCGC	2 cut(s)	718, 829
SspMI	CTAG	5 cut(s)	227, 246, 414, 450, 857
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	465, 611, 736
TaqI	TCGA	5 cut(s)	118, 127, 418, 757, 793
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	4 cut(s)	603, 685, 788, 804
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	4 cut(s)	63, 266, 432, 606
Tru9I	TTAA	4 cut(s)	63, 266, 432, 606
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	4 cut(s)	249, 356, 437, 702
TspDTI	ATGAA	5 cut(s)	40, 162, 789, 911, 966
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	1 cut(s)	709
XmiI	GTMKAC	2 cut(s)	418, 840
XspI	CTAG	5 cut(s)	227, 246, 414, 450, 857
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.