Rh5AG155100

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001394
Physical Location & Seq
Reverse (-)
16377840 .. 16379439
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG155100.1

Sequence Viewer

Length: 585 bp
ATGGAGAAGCTACCATCACAAGAAGCCACAGACAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATTTCTGTCTCTGAAGCACCTATCACTCCTACTGGATTTCTATGGGATCGACAATGGTTAGTTATAAACGAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAGCTCGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGCTTGGGAACATACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAATTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCCGATGCATCAAAATGGTTTTCAGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCATCTCAGGTTAGGCAGATTGAGATGTGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

194

Amino Acids

22.0

Weight (kDa)

5.79

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 12 - 138 3.1e-32 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccI GTMKAC 1 cut(s) 418
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 3 cut(s) 111, 311, 426
AfaI GTAC 2 cut(s) 204, 288
AgsI TTSAA 2 cut(s) 179, 336
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 10, 187, 208, 252, 440
AluI AGCT 5 cut(s) 10, 187, 208, 252, 440
Alw26I GTCTC 3 cut(s) 43, 91, 480
AlwI GGATC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 249, 356, 437
ApoI RAATTY 1 cut(s) 330
BbvI GCAGC 3 cut(s) 261, 343, 449
BccI CCATC 2 cut(s) 22, 320
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 43, 91, 480
BfaI CTAG 4 cut(s) 227, 246, 414, 450
BisI GCNGC 3 cut(s) 250, 357, 438
BlsI GCNGC 3 cut(s) 251, 358, 439
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 373, 492
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 3 cut(s) 367, 389, 560
BsaI GGTCTC 1 cut(s) 480
Bse1I ACTGG 2 cut(s) 59, 115
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 2 cut(s) 59, 115
BseXI GCAGC 3 cut(s) 261, 343, 449
BseYI CCCAGC 1 cut(s) 503
BsmAI GTCTC 3 cut(s) 43, 91, 480
BsmI GAATGC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 480
Bsp143I GATC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 373, 492
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 480
BsrI ACTGG 2 cut(s) 59, 115
BssMI GATC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 361, 555
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 3 cut(s) 43, 91, 480
BstMBI GATC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 3 cut(s) 261, 343, 449
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 203, 287
CviAII CATG 3 cut(s) 69, 280, 520
CviJI RGCY 8 cut(s) 10, 26, 187, 208, 233, 252, 374, 440
CviKI_1 RGCY 8 cut(s) 10, 26, 187, 208, 233, 252, 374, 440
CviQI GTAC 2 cut(s) 203, 287
DdeI CTNAG 2 cut(s) 361, 555
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 480
Eco57I CTGAAG 3 cut(s) 111, 311, 426
EcoRII CCWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 3 cut(s) 72, 283, 523
FatI CATG 3 cut(s) 68, 279, 519
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 250, 357, 438
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 250, 357, 438
FspBI CTAG 4 cut(s) 227, 246, 414, 450
GluI GCNGC 3 cut(s) 250, 357, 438
GsaI CCCAGC 1 cut(s) 507
Hin1II CATG 3 cut(s) 72, 283, 523
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 308, 419
Hpy188I TCNGA 4 cut(s) 91, 397, 445, 529
Hpy8I GTNNAC 2 cut(s) 308, 419
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 380, 437
HpyF3I CTNAG 2 cut(s) 361, 555
Hsp92II CATG 3 cut(s) 72, 283, 523
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 261, 343, 449
LweI GCATC 3 cut(s) 367, 389, 560
MaeI CTAG 4 cut(s) 227, 246, 414, 450
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 40, 304
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 4 cut(s) 193, 211, 223, 361
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 3 cut(s) 63, 266, 432
MslI CAYNNNNRTG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 276
NdeII GATC 1 cut(s) 124
NlaIII CATG 3 cut(s) 72, 283, 523
NlaIV GGNNCC 2 cut(s) 373, 492
NsiI ATGCAT 1 cut(s) 382
PctI GAATGC 1 cut(s) 221
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 251, 358, 439
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 373, 492
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 2 cut(s) 204, 288
RsaNI GTAC 2 cut(s) 203, 287
RseI CAYNNNNRTG 1 cut(s) 385
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 3 cut(s) 63, 266, 432
SatI GCNGC 3 cut(s) 250, 357, 438
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 3 cut(s) 367, 389, 560
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 1 cut(s) 330
SspMI CTAG 4 cut(s) 227, 246, 414, 450
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 127, 418
TasI AATT 1 cut(s) 330
TatI WGTACW 1 cut(s) 286
Tru1I TTAA 3 cut(s) 63, 266, 432
Tru9I TTAA 3 cut(s) 63, 266, 432
TseI GCWGC 3 cut(s) 249, 356, 437
TspDTI ATGAA 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 35
XapI RAATTY 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 4 cut(s) 227, 246, 414, 450
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.