Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013135.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

17685 .. 19275

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013135.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggagaaggcagtttcagaagtcaaagttgcatcaatcttcatatacccagtaaaatcatgccgtggaatttcagtttctgaagctcctgttactcctactggttttcgttgggatcgacaatggttagtagtaaactacaaagggaaagcatatactcaaagagttgagccaaagcttgctttggttgaggtacagctgccaaatgaggcattcctagagaatttggaacctactaaaagctcttatctagtattaaaagcacctgggatggatgtgctgaaggtttccttgagcacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgctgccttagatgagggagctgatgcatcgaaatggttttcagattatcttgggagaactcttctagatttcagacactcatgttttatggaagtacctacaatcaatcaagctacatgcattgcaggaattgagacaaccgacactcttaagaaaatccggtctgatgcaattttacgtccaacaggggaaacagcagggaagggaggtgtgaagggaaatgtcgtgaaggttggagatcttgtttatgtcctcaagatggtctcttctgctgatgaagcagcaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

211

Amino Acids

23.0

Weight (kDa)

5.59

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	69, 223
AcuI	CTGAAG	2 cut(s)	102, 302
AfaI	GTAC	2 cut(s)	195, 441
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	6 cut(s)	86, 178, 199, 243, 365, 458
AluI	AGCT	6 cut(s)	86, 178, 199, 243, 365, 458
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	473, 613
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	199, 347, 626
ApoI	RAATTY	2 cut(s)	69, 223
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	186, 334
BccI	CCATC	3 cut(s)	265, 311, 598
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	473, 613
BfaI	CTAG	3 cut(s)	218, 251, 410
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	3 cut(s)	200, 348, 627
BlsI	GCNGC	3 cut(s)	201, 349, 628
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	4 cut(s)	41, 358, 380, 502
BmuI	ACTGGG	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	313, 584
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	64, 266
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	50, 106
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	64, 266
BseGI	GGATG	2 cut(s)	276, 280
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	50, 106
BseXI	GCAGC	2 cut(s)	186, 334
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	2 cut(s)	473, 613
BsmI	GAATGC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	115, 583
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	50, 106
BssECI	CCNNGG	2 cut(s)	64, 266
BssMI	GATC	2 cut(s)	115, 583
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	411, 616
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	276, 280
BstKTI	GATC	2 cut(s)	118, 586
BstMAI	GTCTC	2 cut(s)	473, 613
BstMBI	GATC	2 cut(s)	115, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	186, 334
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	276, 280
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	194, 440
CviAII	CATG	3 cut(s)	60, 426, 462
CviJI	RGCY	7 cut(s)	86, 172, 178, 199, 243, 365, 458
CviKI_1	RGCY	7 cut(s)	86, 172, 178, 199, 243, 365, 458
CviQI	GTAC	2 cut(s)	194, 440
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	2 cut(s)	117, 585
DpnII	GATC	2 cut(s)	115, 583
Eam1104I	CTCTTC	2 cut(s)	411, 616
EarI	CTCTTC	2 cut(s)	411, 616
Eco31I	GGTCTC	1 cut(s)	613
Eco57I	CTGAAG	2 cut(s)	102, 302
EcoRII	CCWGG	1 cut(s)	265
EcoT22I	ATGCAT	2 cut(s)	373, 467
FaeI	CATG	3 cut(s)	63, 429, 465
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	3 cut(s)	59, 425, 461
Fnu4HI	GCNGC	3 cut(s)	200, 348, 627
FokI	GGATG	2 cut(s)	283, 287
Fsp4HI	GCNGC	3 cut(s)	200, 348, 627
FspBI	CTAG	3 cut(s)	218, 251, 410
GluI	GCNGC	3 cut(s)	200, 348, 627
HapII	CCGG	1 cut(s)	505
Hin1II	CATG	3 cut(s)	63, 429, 465
HindIII	AAGCTT	1 cut(s)	176
HpaII	CCGG	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	19, 82, 388, 419, 511
Hpy188III	TCNNGA	3 cut(s)	410, 571, 601
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	277, 541, 553, 568
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	5 cut(s)	32, 371, 465, 470, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	3 cut(s)	63, 429, 465
Kzo9I	GATC	2 cut(s)	115, 583
LmnI	GCTCC	2 cut(s)	91, 362
Lsp1109I	GCAGC	2 cut(s)	186, 334
LweI	GCATC	4 cut(s)	41, 358, 380, 502
MaeI	CTAG	3 cut(s)	218, 251, 410
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	117, 585
MboI	GATC	2 cut(s)	115, 583
MboII	GAAGA	3 cut(s)	31, 398, 603
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	4 cut(s)	69, 223, 474, 516
MmeI	TCCRAC	2 cut(s)	551, 559
MnlI	CCTC	5 cut(s)	184, 202, 352, 545, 608
Mph1103I	ATGCAT	2 cut(s)	373, 467
MseI	TTAA	2 cut(s)	257, 495
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	199
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	2 cut(s)	115, 583
NlaIII	CATG	3 cut(s)	63, 429, 465
NlaIV	GGNNCC	1 cut(s)	231
NsiI	ATGCAT	2 cut(s)	373, 467
NspI	RCATGY	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PctI	GAATGC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	201, 349, 628
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	195, 441
RsaNI	GTAC	2 cut(s)	194, 440
RseI	CAYNNNNRTG	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	257, 495
SatI	GCNGC	3 cut(s)	200, 348, 627
Sau3AI	GATC	2 cut(s)	115, 583
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	4 cut(s)	41, 358, 380, 502
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	3 cut(s)	292, 494, 599
SmoI	CTYRAG	3 cut(s)	292, 494, 599
Sse9I	AATT	4 cut(s)	69, 223, 474, 516
SspMI	CTAG	3 cut(s)	218, 251, 410
StyD4I	CCNGG	1 cut(s)	265
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	118, 374
TasI	AATT	4 cut(s)	69, 223, 474, 516
Tru1I	TTAA	2 cut(s)	257, 495
Tru9I	TTAA	2 cut(s)	257, 495
TseI	GCWGC	3 cut(s)	199, 347, 626
TspDTI	ATGAA	2 cut(s)	31, 636
Vha464I	CTTAAG	1 cut(s)	494
XapI	RAATTY	2 cut(s)	69, 223
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	465
XspI	CTAG	3 cut(s)	218, 251, 410
Zsp2I	ATGCAT	2 cut(s)	373, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.