Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Forward (+)

64254823 .. 64256733

Gene Structure 1911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTACATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTGAAGCTCCTGTTACTCCTACTGGTTTTCGTTGGGATCAACAATGGTTAGTAGTAAACTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAGCTGCCAAATGAGGCATTCCTAGAGAATTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGTTGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTCTAAAATTGCAAGGATTAAGGAAAGTCTTGCATGTAAGGGTTAAATTACACTTCCTATTTAACCCCATGTTGTTGCTAGGCTGCCATAGTGCCCGACATCTTGGGAGAACTCTTCCAGATTTCAGACACTCATGTTTTATGGAAGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAATTGAGACAACCGACACTCTTAAGAAAATCCGGTCTGATGCAATTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGTAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

265

Amino Acids

29.45

Weight (kDa)

9.26

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	9 - 135	5.9e-34	MOSC N-terminal beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	409, 672
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	2 cut(s)	102, 302
AfaI	GTAC	3 cut(s)	195, 298, 561
AfiI	CCNNNNNNNGG	1 cut(s)	766
AflII	CTTAAG	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	7 cut(s)	86, 178, 199, 243, 365, 578, 794
AluI	AGCT	7 cut(s)	86, 178, 199, 243, 365, 578, 794
Alw26I	GTCTC	3 cut(s)	593, 693, 775
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	4 cut(s)	199, 495, 682, 791
ApoI	RAATTY	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	508
BbvI	GCAGC	3 cut(s)	186, 482, 694
BccI	CCATC	3 cut(s)	265, 311, 760
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	593, 693, 775
BfaI	CTAG	5 cut(s)	218, 251, 395, 405, 491
BfrI	CTTAAG	1 cut(s)	614
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	4 cut(s)	200, 496, 683, 792
BlsI	GCNGC	4 cut(s)	201, 497, 684, 793
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	4 cut(s)	358, 380, 622, 694
BmuI	ACTGGG	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	313, 746
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	2 cut(s)	64, 266
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse1I	ACTGG	3 cut(s)	50, 106, 586
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	64, 266
BseGI	GGATG	2 cut(s)	276, 280
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	50, 106, 586
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	186, 482, 694
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	3 cut(s)	593, 693, 775
BsmI	GAATGC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	115, 745
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	50, 106, 586
BssECI	CCNNGG	2 cut(s)	64, 266
BssMI	GATC	2 cut(s)	115, 745
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	531, 778
BstAFI	CTTAAG	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	276, 280
BstKTI	GATC	2 cut(s)	118, 748
BstMAI	GTCTC	3 cut(s)	593, 693, 775
BstMBI	GATC	2 cut(s)	115, 745
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	3 cut(s)	186, 482, 694
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	276, 280
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	194, 297, 560
CviAII	CATG	4 cut(s)	60, 446, 481, 546
CviJI	RGCY	9 cut(s)	86, 172, 178, 199, 243, 365, 495, 578, 794
CviKI_1	RGCY	9 cut(s)	86, 172, 178, 199, 243, 365, 495, 578, 794
CviQI	GTAC	3 cut(s)	194, 297, 560
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	2 cut(s)	117, 747
DpnII	GATC	2 cut(s)	115, 745
Eam1104I	CTCTTC	2 cut(s)	531, 778
EarI	CTCTTC	2 cut(s)	531, 778
Eco31I	GGTCTC	1 cut(s)	775
Eco57I	CTGAAG	2 cut(s)	102, 302
EcoRII	CCWGG	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	4 cut(s)	63, 449, 484, 549
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	4 cut(s)	59, 445, 480, 545
FblI	GTMKAC	2 cut(s)	409, 672
Fnu4HI	GCNGC	4 cut(s)	200, 496, 683, 792
FokI	GGATG	2 cut(s)	283, 287
Fsp4HI	GCNGC	4 cut(s)	200, 496, 683, 792
FspBI	CTAG	5 cut(s)	218, 251, 395, 405, 491
GluI	GCNGC	4 cut(s)	200, 496, 683, 792
HapII	CCGG	1 cut(s)	625
Hin1II	CATG	4 cut(s)	63, 449, 484, 549
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	701
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	4 cut(s)	136, 299, 410, 673
Hpy188I	TCNGA	5 cut(s)	19, 82, 388, 539, 631
Hpy188III	TCNNGA	3 cut(s)	530, 733, 763
Hpy8I	GTNNAC	4 cut(s)	136, 299, 410, 673
HpyAV	CCTTC	4 cut(s)	277, 660, 715, 730
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	6 cut(s)	371, 424, 445, 590, 635, 710
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	63, 449, 484, 549
Kzo9I	GATC	2 cut(s)	115, 745
LmnI	GCTCC	2 cut(s)	91, 362
Lsp1109I	GCAGC	3 cut(s)	186, 482, 694
LweI	GCATC	4 cut(s)	358, 380, 622, 694
MaeI	CTAG	5 cut(s)	218, 251, 395, 405, 491
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	28, 91
MalI	GATC	2 cut(s)	117, 747
MboI	GATC	2 cut(s)	115, 745
MboII	GAAGA	3 cut(s)	31, 518, 765
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	6 cut(s)	69, 223, 419, 458, 594, 636
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	671, 721
MnlI	CCTC	6 cut(s)	141, 184, 202, 352, 707, 770
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	5 cut(s)	257, 431, 456, 474, 615
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	199
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	115, 745
NlaIII	CATG	4 cut(s)	63, 449, 484, 549
NlaIV	GGNNCC	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	449
PctI	GAATGC	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	201, 497, 684, 793
PleI	GAGTC	1 cut(s)	695
PpsI	GAGTC	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	195, 298, 561
RsaNI	GTAC	3 cut(s)	194, 297, 560
RseI	CAYNNNNRTG	1 cut(s)	376
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	5 cut(s)	257, 431, 456, 474, 615
SatI	GCNGC	4 cut(s)	200, 496, 683, 792
Sau3AI	GATC	2 cut(s)	115, 745
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	4 cut(s)	358, 380, 622, 694
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	3 cut(s)	292, 614, 761
SmoI	CTYRAG	3 cut(s)	292, 614, 761
Sse9I	AATT	6 cut(s)	69, 223, 419, 458, 594, 636
SspMI	CTAG	5 cut(s)	218, 251, 395, 405, 491
StyD4I	CCNGG	1 cut(s)	265
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	2 cut(s)	374, 409
TasI	AATT	6 cut(s)	69, 223, 419, 458, 594, 636
TatI	WGTACW	1 cut(s)	296
Tru1I	TTAA	5 cut(s)	257, 431, 456, 474, 615
Tru9I	TTAA	5 cut(s)	257, 431, 456, 474, 615
TseI	GCWGC	4 cut(s)	199, 495, 682, 791
TspDTI	ATGAA	2 cut(s)	31, 798
Vha464I	CTTAAG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	2 cut(s)	409, 672
XspI	CTAG	5 cut(s)	218, 251, 395, 405, 491
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.