Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004847.1

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

60029 .. 62550

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004847.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggagcaggcagtttcagaagtcaaagttgcatcaatcttcatatacccagtaaaatcatgccgtggaatttcagtttctcaagctcctgttactcctactggttttcgttgggatcgacaatggttagtagtaaattacaaagggagggcatatactcaacgagttgagccaaagcttgctttggttgaggtactgctgccaattgaggcattctcagagaattgggaacctactaaaagctcttatcttgtattaaaagcacctgggatggatgtgctgaaggtttccttgagtacaccacaagaaatagcagatggggtttcagtatgggaatggtctggtgcagccttagatgagggagctgatgcatcgaaatggttttcagattatctagggaaacctagtcgacttgtccgctttaatgcagcttcagaaactaggcctgtagaacctgaatatgctcctggacaccaaataatgttctccgatatgtatccatacatgctattgtctcaggtacctacaatcaatcaagcgactggcattgcaggacctgagccaaacgacactcttaagaaaatccggtctgatgcagttttacgtccaacaggaaaacagcagggaagggtctacttcgggcagaatattgtttggagagactctgttacaggaggtgtgaagggaaatgtcatgaaggttggagatcttgtatatgtcctcaagatggtctcttctgctgatgaagcagctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

252

Amino Acids

27.78

Weight (kDa)

6.63

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	409, 633
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	2 cut(s)	302, 417
AfaI	GTAC	3 cut(s)	195, 298, 522
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflII	CTTAAG	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	265, 466
AluBI	AGCT	6 cut(s)	86, 178, 243, 365, 431, 752
AluI	AGCT	6 cut(s)	86, 178, 243, 365, 431, 752
Alw26I	GTCTC	3 cut(s)	519, 654, 736
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	5 cut(s)	199, 347, 428, 749, 752
ApoI	RAATTY	1 cut(s)	69
Asp718I	GGTACC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	186, 359, 440, 739
BccI	CCATC	3 cut(s)	265, 311, 721
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	267, 468
BciVI	GTATCC	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	519, 654, 736
BfaI	CTAG	3 cut(s)	395, 405, 441
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	5 cut(s)	200, 348, 429, 750, 753
BlsI	GCNGC	5 cut(s)	201, 349, 430, 751, 754
Bme1390I	CCNGG	2 cut(s)	267, 468
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	231, 522
BmrFI	CCNGG	2 cut(s)	267, 468
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	4 cut(s)	41, 358, 380, 583
BmuI	ACTGGG	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	3 cut(s)	66, 313, 707
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	736
BsaJI	CCNNGG	2 cut(s)	64, 266
BsaWI	WCCGGW	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	3 cut(s)	50, 106, 547
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	267, 468
BseDI	CCNNGG	2 cut(s)	64, 266
BseGI	GGATG	2 cut(s)	276, 280
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	231, 530, 549
BseNI	ACTGG	3 cut(s)	50, 106, 547
BseXI	GCAGC	4 cut(s)	186, 359, 440, 739
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	586
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	3 cut(s)	519, 654, 736
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	445
Bso31I	GGTCTC	1 cut(s)	736
Bsp143I	GATC	2 cut(s)	115, 706
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	230, 529, 550
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	231, 522
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	736
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	50, 106, 547
BssECI	CCNNGG	2 cut(s)	64, 266
BssMI	GATC	2 cut(s)	115, 706
Bst2UI	CCWGG	2 cut(s)	267, 468
Bst6I	CTCTTC	1 cut(s)	739
BstAFI	CTTAAG	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	9, 180
BstDEI	CTNAG	4 cut(s)	217, 352, 516, 558
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	276, 280
BstKTI	GATC	2 cut(s)	118, 709
BstMAI	GTCTC	3 cut(s)	519, 654, 736
BstMBI	GATC	2 cut(s)	115, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	2 cut(s)	267, 468
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	265, 466
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	186, 359, 440, 739
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	276, 280
Cac8I	GCNNGC	2 cut(s)	9, 180
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	3 cut(s)	194, 297, 521
CviAII	CATG	3 cut(s)	60, 505, 694
CviQI	GTAC	3 cut(s)	194, 297, 521
DdeI	CTNAG	4 cut(s)	217, 352, 516, 558
DpnI	GATC	2 cut(s)	117, 708
DpnII	GATC	2 cut(s)	115, 706
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	2 cut(s)	302, 417
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	265, 466
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	3 cut(s)	63, 508, 697
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	3 cut(s)	59, 504, 693
FblI	GTMKAC	2 cut(s)	409, 633
Fnu4HI	GCNGC	5 cut(s)	200, 348, 429, 750, 753
FokI	GGATG	2 cut(s)	283, 287
Fsp4HI	GCNGC	5 cut(s)	200, 348, 429, 750, 753
FspBI	CTAG	3 cut(s)	395, 405, 441
GluI	GCNGC	5 cut(s)	200, 348, 429, 750, 753
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	3 cut(s)	63, 508, 697
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	1 cut(s)	586
Hpy166II	GTNNAC	3 cut(s)	299, 410, 634
Hpy188I	TCNGA	6 cut(s)	19, 220, 388, 436, 490, 592
Hpy188III	TCNNGA	2 cut(s)	694, 724
Hpy8I	GTNNAC	3 cut(s)	299, 410, 634
HpyAV	CCTTC	4 cut(s)	277, 621, 676, 691
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	6 cut(s)	32, 347, 371, 428, 551, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	4 cut(s)	217, 352, 516, 558
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	63, 508, 697
KpnI	GGTACC	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	115, 706
LmnI	GCTCC	4 cut(s)	4, 91, 362, 469
Lsp1109I	GCAGC	4 cut(s)	186, 359, 440, 739
LweI	GCATC	4 cut(s)	41, 358, 380, 583
MaeI	CTAG	3 cut(s)	395, 405, 441
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	2 cut(s)	91, 667
MalI	GATC	2 cut(s)	117, 708
MboI	GATC	2 cut(s)	115, 706
MboII	GAAGA	2 cut(s)	31, 726
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	706
MluCI	AATT	4 cut(s)	69, 136, 204, 223
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	632, 682
MnlI	CCTC	6 cut(s)	141, 184, 202, 352, 668, 731
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	3 cut(s)	257, 423, 576
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	267, 468
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	267, 468
MwoI	GCNNNNNNNGC	1 cut(s)	746
NdeII	GATC	2 cut(s)	115, 706
NlaIII	CATG	3 cut(s)	63, 508, 697
NlaIV	GGNNCC	2 cut(s)	231, 522
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PctI	GAATGC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	5 cut(s)	201, 349, 430, 751, 754
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	265, 466
PspGI	CCWGG	2 cut(s)	265, 466
PspN4I	GGNNCC	2 cut(s)	231, 522
PspPI	GGNCC	1 cut(s)	554
PspPPI	RGGWCCY	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	195, 298, 522
RsaNI	GTAC	3 cut(s)	194, 297, 521
RseI	CAYNNNNRTG	1 cut(s)	376
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	257, 423, 576
SatI	GCNGC	5 cut(s)	200, 348, 429, 750, 753
Sau3AI	GATC	2 cut(s)	115, 706
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	267, 468
SfaNI	GCATC	4 cut(s)	41, 358, 380, 583
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	4 cut(s)	81, 292, 575, 722
SmoI	CTYRAG	4 cut(s)	81, 292, 575, 722
Sse9I	AATT	4 cut(s)	69, 136, 204, 223
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	3 cut(s)	395, 405, 441
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	265, 466
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	118, 374, 409
TasI	AATT	4 cut(s)	69, 136, 204, 223
TatI	WGTACW	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	257, 423, 576
Tru9I	TTAA	3 cut(s)	257, 423, 576
TseI	GCWGC	5 cut(s)	199, 347, 428, 749, 752
TspDTI	ATGAA	3 cut(s)	31, 710, 759
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	409, 633
XspI	CTAG	3 cut(s)	395, 405, 441
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.