Rw5G013840

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001394
Physical Location & Seq
Reverse (-)
16352109 .. 16360239
8131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013840.1

Sequence Viewer

Length: 1041 bp
ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCTCATGTCACTCCTACTGGTTTTCGTTGGGATCGACAATGGTTAGTGGTAAATTACAAAGGCAGGGCATATACTCAACGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACTGCTGCCAATTGAGGCATTCTCAGAGAATTGGGAACCTACTAAAAGCTCTTATCTTGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCAGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGAACCTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCACTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGAGATCAGGATAGAGAAGCTAACATTTCAAGGTGTCAAGCTATGCGCCCGCTGTAAGGTACCTACAATCAATCAAGCGACTGGCATTGCAGGACCTGAGCCAAACGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCATGAAGGTTGGAGATCTTGTATATGTCCTCAAATGGTCTCTTCTGCTGATGAAGCAGCTGCTTGAATTTTGTAATGTTGTAATGGCTCCTCAGAAGAGAGTGAACCGGGTTTGGGAGCAAAGGGTTTCTATGCCAATGAGGCCCGAGTGTGAGAATGGGATGCGTTGGGGTAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

346

Amino Acids

39.06

Weight (kDa)

8.77

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 9 - 135 1.1e-35 MOSC N-terminal beta barrel domain
MOSC PF03473 158 - 294 7e-21 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 409, 801
AciI CCGC 2 cut(s) 418, 679
AclWI GGATC 2 cut(s) 123, 529
AcsI RAATTY 2 cut(s) 69, 926
AcuI CTGAAG 3 cut(s) 302, 417, 569
AfaI GTAC 3 cut(s) 195, 298, 690
AfiI CCNNNNNNNGG 2 cut(s) 685, 973
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 2 cut(s) 659, 926
AjnI CCWGG 2 cut(s) 265, 466
AluBI AGCT 9 cut(s) 86, 178, 243, 365, 431, 544, 649, 670, 919
AluI AGCT 9 cut(s) 86, 178, 243, 365, 431, 544, 649, 670, 919
Alw26I GTCTC 3 cut(s) 519, 822, 903
AlwI GGATC 2 cut(s) 123, 529
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 1004
AoxI GGCC 2 cut(s) 443, 1001
ApeKI GCWGC 5 cut(s) 199, 347, 428, 916, 919
ApoI RAATTY 2 cut(s) 69, 926
Asp718I GGTACC 1 cut(s) 688
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 722, 1002
AsuC2I CCSGG 1 cut(s) 968
AvaI CYCGRG 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 5 cut(s) 186, 359, 440, 906, 928
BccI CCATC 2 cut(s) 265, 311
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 267, 468
BciVI GTATCC 1 cut(s) 507
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 3 cut(s) 519, 822, 903
BfaI CTAG 3 cut(s) 395, 405, 441
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 743
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 1000
BglII AGATCT 1 cut(s) 874
BisI GCNGC 5 cut(s) 200, 348, 429, 917, 920
BlsI GCNGC 5 cut(s) 201, 349, 430, 918, 921
Bme1390I CCNGG 3 cut(s) 267, 468, 968
Bme18I GGWCC 1 cut(s) 722
BmeT110I CYCGRG 1 cut(s) 1004
BmgT120I GGNCC 2 cut(s) 722, 1002
BmiI GGNNCC 4 cut(s) 231, 555, 690, 948
BmrFI CCNGG 3 cut(s) 267, 468, 968
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 6 cut(s) 41, 358, 380, 520, 751, 1011
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 624
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 66, 313
BpuMI CCSGG 1 cut(s) 968
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 2 cut(s) 64, 266
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 685, 973
Bse1I ACTGG 5 cut(s) 50, 106, 531, 563, 715
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 267, 468
BseDI CCNNGG 2 cut(s) 64, 266
BseGI GGATG 5 cut(s) 276, 280, 535, 605, 1026
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 685, 973
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 4 cut(s) 231, 530, 717, 965
BseNI ACTGG 5 cut(s) 50, 106, 531, 563, 715
BseRI GAGGAG 1 cut(s) 939
BseXI GCAGC 5 cut(s) 186, 359, 440, 906, 928
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 2 cut(s) 445, 1003
BshNI GGYRCC 1 cut(s) 688
BsiHKCI CYCGRG 1 cut(s) 1004
BsiSI CCGG 2 cut(s) 754, 967
BslI CCNNNNNNNGG 2 cut(s) 685, 973
BsmAI GTCTC 3 cut(s) 519, 822, 903
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 445, 1003
Bso31I GGTCTC 1 cut(s) 903
BsoBI CYCGRG 1 cut(s) 1004
Bsp143I GATC 4 cut(s) 115, 521, 633, 874
BspACI CCGC 2 cut(s) 418, 679
BspANI GGCC 2 cut(s) 445, 1003
BspCNI CTCAG 4 cut(s) 230, 529, 718, 964
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 4 cut(s) 231, 555, 690, 948
BspPI GGATC 2 cut(s) 123, 529
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 903
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 5 cut(s) 50, 106, 531, 563, 715
BssECI CCNNGG 2 cut(s) 64, 266
BssMI GATC 4 cut(s) 115, 521, 633, 874
Bst2UI CCWGG 2 cut(s) 267, 468
Bst6I CTCTTC 2 cut(s) 906, 950
BstAFI CTTAAG 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 180, 679
BstDEI CTNAG 5 cut(s) 217, 352, 516, 726, 951
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 5 cut(s) 276, 280, 535, 605, 1026
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 4 cut(s) 118, 524, 636, 877
BstMAI GTCTC 3 cut(s) 519, 822, 903
BstMBI GATC 4 cut(s) 115, 521, 633, 874
BstMWI GCNNNNNNNGC 2 cut(s) 913, 1000
BstNI CCWGG 2 cut(s) 267, 468
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 3 cut(s) 265, 466, 966
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 5 cut(s) 186, 359, 440, 906, 928
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 445, 1003
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 5 cut(s) 276, 280, 535, 605, 1026
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 180, 679
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 861
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 722, 1002
Csp6I GTAC 3 cut(s) 194, 297, 689
CviAII CATG 4 cut(s) 60, 89, 505, 862
CviQI GTAC 3 cut(s) 194, 297, 689
DdeI CTNAG 5 cut(s) 217, 352, 516, 726, 951
DpnI GATC 4 cut(s) 117, 523, 635, 876
DpnII GATC 4 cut(s) 115, 521, 633, 874
Eam1104I CTCTTC 2 cut(s) 906, 950
EarI CTCTTC 2 cut(s) 906, 950
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 3 cut(s) 302, 417, 569
Eco88I CYCGRG 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 265, 466
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 4 cut(s) 63, 92, 508, 865
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 4 cut(s) 59, 88, 504, 861
FauI CCCGC 1 cut(s) 686
FblI GTMKAC 2 cut(s) 409, 801
Fnu4HI GCNGC 5 cut(s) 200, 348, 429, 917, 920
FokI GGATG 5 cut(s) 283, 287, 542, 612, 1033
Fsp4HI GCNGC 5 cut(s) 200, 348, 429, 917, 920
FspBI CTAG 3 cut(s) 395, 405, 441
GlaI GCGC 1 cut(s) 676
GluI GCNGC 5 cut(s) 200, 348, 429, 917, 920
HaeIII GGCC 2 cut(s) 445, 1003
HapII CCGG 2 cut(s) 754, 967
HhaI GCGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 63, 92, 508, 865
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 3 cut(s) 410, 568, 595
HindII GTYRAC 3 cut(s) 410, 568, 595
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 814, 830
HpaI GTTAAC 2 cut(s) 568, 595
HpaII CCGG 2 cut(s) 754, 967
Hpy166II GTNNAC 7 cut(s) 299, 410, 568, 595, 605, 802, 964
Hpy188I TCNGA 9 cut(s) 19, 220, 388, 436, 490, 549, 616, 760, 954
Hpy188III TCNNGA 2 cut(s) 637, 862
Hpy8I GTNNAC 7 cut(s) 299, 410, 568, 595, 605, 802, 964
HpyAV CCTTC 5 cut(s) 277, 544, 789, 844, 859
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 7 cut(s) 32, 347, 371, 428, 533, 719, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 913, 1000
HpyF3I CTNAG 5 cut(s) 217, 352, 516, 726, 951
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 4 cut(s) 63, 92, 508, 865
HspAI GCGC 1 cut(s) 675
KpnI GGTACC 1 cut(s) 692
KspAI GTTAAC 2 cut(s) 568, 595
Kzo9I GATC 4 cut(s) 115, 521, 633, 874
LmnI GCTCC 4 cut(s) 362, 469, 952, 976
Lsp1109I GCAGC 5 cut(s) 186, 359, 440, 906, 928
LweI GCATC 6 cut(s) 41, 358, 380, 520, 751, 1011
MaeI CTAG 3 cut(s) 395, 405, 441
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 2 cut(s) 91, 835
MalI GATC 4 cut(s) 117, 523, 635, 876
MboI GATC 4 cut(s) 115, 521, 633, 874
MboII GAAGA 4 cut(s) 31, 629, 893, 967
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 874
MluCI AATT 5 cut(s) 69, 136, 204, 223, 926
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 2 cut(s) 800, 850
MnlI CCTC 7 cut(s) 184, 202, 352, 836, 899, 960, 993
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 5 cut(s) 257, 423, 567, 594, 744
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 2 cut(s) 681, 919
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 754, 967
MspR9I CCNGG 3 cut(s) 267, 468, 968
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 267, 468
MwoI GCNNNNNNNGC 2 cut(s) 913, 1000
NciI CCSGG 1 cut(s) 968
NdeII GATC 4 cut(s) 115, 521, 633, 874
NlaIII CATG 4 cut(s) 63, 92, 508, 865
NlaIV GGNNCC 4 cut(s) 231, 555, 690, 948
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 508
PagI TCATGA 1 cut(s) 861
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 814
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 5 cut(s) 201, 349, 430, 918, 921
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 265, 466
PspGI CCWGG 2 cut(s) 265, 466
PspN4I GGNNCC 4 cut(s) 231, 555, 690, 948
PspPI GGNCC 2 cut(s) 722, 1002
PspPPI RGGWCCY 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 3 cut(s) 195, 298, 690
RsaNI GTAC 3 cut(s) 194, 297, 689
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 257, 423, 567, 594, 744
SatI GCNGC 5 cut(s) 200, 348, 429, 917, 920
Sau3AI GATC 4 cut(s) 115, 521, 633, 874
Sau96I GGNCC 2 cut(s) 722, 1002
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 3 cut(s) 267, 468, 968
SfaNI GCATC 6 cut(s) 41, 358, 380, 520, 751, 1011
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 3 cut(s) 81, 292, 743
SmoI CTYRAG 3 cut(s) 81, 292, 743
Sse9I AATT 5 cut(s) 69, 136, 204, 223, 926
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 418, 679
SspMI CTAG 3 cut(s) 395, 405, 441
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 265, 466, 966
TaiI ACGT 1 cut(s) 775
TaqI TCGA 3 cut(s) 118, 374, 409
TasI AATT 5 cut(s) 69, 136, 204, 223, 926
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 5 cut(s) 257, 423, 567, 594, 744
Tru9I TTAA 5 cut(s) 257, 423, 567, 594, 744
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 5 cut(s) 199, 347, 428, 916, 919
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 31, 878, 926
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 2 cut(s) 69, 926
XceI RCATGY 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 409, 801
XspI CTAG 3 cut(s) 395, 405, 441
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.