Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

16317885 .. 16320782

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGAAGCAACCATCACAAGAAGCCATAGCCAAAGTCTCATCAATCTTCATATATCCAGTCAAATCATGTCGAGGGATTTCGGTTTCTGAAGCACCTATCACCCCTACTGGGTTTCGATGGGATCGACAATGGTTAGTTATAAATGAAAAAAGGAGAGCATATACTCAGAGAGTTGAACCAAAGCTTGCTTGTGTTGAGGTACGGCTACCAAACGAGGCATTCCTAGAGGGTTGGGAACCTACTAGCAGCTCTTATCTGGTATTAAAAGCACATGGCATGGATGAACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGACGAGGGAGCTGATGCATCAAAATGGTTTTCTGACTATCTAGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCTTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCTGACATTTTTCCATACTTAATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTAAAGGACCCTGTACCGATTAACCGTTTCAGACCCAACATTCTTGTTGATGGTTGTGAACCATTTTCAGAAGACTTATGGACAGATGTCAGGATAAACAGGTTCACATTTCAATGCTGCATGCTGTGCTACCGCTGCAAGATACCTACGGTGAATCAAGAGACTGGCATTCAAGGAACTGAGCCAAATGAAACTCTCAAGAAATTTCGATCGGATGCAACTGTGTATCCATCTCGGAAACAGCAGGGAAGGGTCTACTTCGGGCAGTATCTTGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

321

Amino Acids

36.26

Weight (kDa)

6.18

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	11 - 138	2e-32	MOSC N-terminal beta barrel domain
MOSC	PF03473	172 - 305	4.7e-22	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	418, 840
AccIII	TCCGGA	1 cut(s)	958
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	3 cut(s)	111, 311, 426
AfaI	GTAC	2 cut(s)	204, 600
AfiI	CCNNNNNNNGG	2 cut(s)	111, 934
AgsI	TTSAA	4 cut(s)	179, 336, 698, 758
AluBI	AGCT	4 cut(s)	187, 252, 374, 440
AluI	AGCT	4 cut(s)	187, 252, 374, 440
Alw26I	GTCTC	4 cut(s)	43, 480, 558, 740
AlwI	GGATC	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	958
ApeKI	GCWGC	5 cut(s)	249, 356, 437, 702, 720
ApoI	RAATTY	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	94, 748
AvaII	GGWCC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	5 cut(s)	261, 343, 449, 689, 707
BccI	CCATC	5 cut(s)	22, 114, 320, 629, 823
BceAI	ACGGC	1 cut(s)	221
BciVI	GTATCC	2 cut(s)	562, 822
BcoDI	GTCTC	4 cut(s)	43, 480, 558, 740
BfaI	CTAG	5 cut(s)	227, 246, 404, 414, 450
BfuI	GTATCC	2 cut(s)	562, 822
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	5 cut(s)	250, 357, 438, 703, 721
BlsI	GCNGC	5 cut(s)	251, 358, 439, 704, 722
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	3 cut(s)	240, 492, 594
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	5 cut(s)	367, 389, 569, 592, 790
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 934
Bse1I	ACTGG	3 cut(s)	59, 115, 754
BseAI	TCCGGA	1 cut(s)	958
BseGI	GGATG	2 cut(s)	289, 805
BseLI	CCNNNNNNNGG	2 cut(s)	111, 934
BseMII	CTCAG	3 cut(s)	182, 569, 756
BseNI	ACTGG	3 cut(s)	59, 115, 754
BseXI	GCAGC	5 cut(s)	261, 343, 449, 689, 707
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	959
BslI	CCNNNNNNNGG	2 cut(s)	111, 934
BsmAI	GTCTC	4 cut(s)	43, 480, 558, 740
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	2 cut(s)	221, 753
Bso31I	GGTCTC	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	958
Bsp143I	GATC	3 cut(s)	124, 794, 913
BspACI	CCGC	1 cut(s)	718
BspCNI	CTCAG	3 cut(s)	181, 568, 757
BspEI	TCCGGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	240, 492, 594
BspPI	GGATC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	59, 115, 754
BssMI	GATC	3 cut(s)	124, 794, 913
Bst4CI	ACNGT	3 cut(s)	611, 736, 808
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	189, 707, 883
BstDEI	CTNAG	4 cut(s)	168, 361, 555, 765
BstF5I	GGATG	2 cut(s)	289, 805
BstKTI	GATC	3 cut(s)	127, 797, 916
BstMAI	GTCTC	4 cut(s)	43, 480, 558, 740
BstMBI	GATC	3 cut(s)	124, 794, 913
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 711, 720
BstNSI	RCATGY	1 cut(s)	709
BstPAI	GACNNNNGTC	1 cut(s)	671
BstV1I	GCAGC	5 cut(s)	261, 343, 449, 689, 707
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	2 cut(s)	562, 822
BtsCI	GGATG	2 cut(s)	289, 805
Cac8I	GCNNGC	3 cut(s)	189, 707, 883
Cfr13I	GGNCC	1 cut(s)	592
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	203, 599
CviAII	CATG	7 cut(s)	69, 275, 280, 520, 706, 923, 934
CviJI	RGCY	8 cut(s)	26, 32, 187, 208, 252, 374, 440, 769
CviKI_1	RGCY	8 cut(s)	26, 32, 187, 208, 252, 374, 440, 769
CviQI	GTAC	2 cut(s)	203, 599
DdeI	CTNAG	4 cut(s)	168, 361, 555, 765
DpnI	GATC	3 cut(s)	126, 796, 915
DpnII	GATC	3 cut(s)	124, 794, 913
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	3 cut(s)	111, 311, 426
EcoO109I	RGGNCCY	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	7 cut(s)	72, 278, 283, 523, 709, 926, 937
FatI	CATG	7 cut(s)	68, 274, 279, 519, 705, 922, 933
FblI	GTMKAC	2 cut(s)	418, 840
Fnu4HI	GCNGC	5 cut(s)	250, 357, 438, 703, 721
FokI	GGATG	2 cut(s)	296, 812
Fsp4HI	GCNGC	5 cut(s)	250, 357, 438, 703, 721
FspBI	CTAG	5 cut(s)	227, 246, 404, 414, 450
GluI	GCNGC	5 cut(s)	250, 357, 438, 703, 721
GsaI	CCCAGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	72, 278, 283, 523, 709, 926, 937
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	304, 739, 869
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	2 cut(s)	94, 748
Hpy166II	GTNNAC	5 cut(s)	308, 419, 644, 690, 841
Hpy188III	TCNNGA	4 cut(s)	676, 743, 784, 959
Hpy8I	GTNNAC	5 cut(s)	308, 419, 644, 690, 841
HpyAV	CCTTC	3 cut(s)	474, 828, 883
HpyCH4III	ACNGT	3 cut(s)	611, 736, 808
HpyCH4V	TGCA	6 cut(s)	380, 437, 705, 723, 803, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 711, 720
HpyF3I	CTNAG	4 cut(s)	168, 361, 555, 765
Hsp92II	CATG	7 cut(s)	72, 278, 283, 523, 709, 926, 937
Kpn2I	TCCGGA	1 cut(s)	958
Kzo9I	GATC	3 cut(s)	124, 794, 913
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	5 cut(s)	261, 343, 449, 689, 707
LweI	GCATC	5 cut(s)	367, 389, 569, 592, 790
MaeI	CTAG	5 cut(s)	227, 246, 404, 414, 450
MalI	GATC	3 cut(s)	126, 796, 915
MboI	GATC	3 cut(s)	124, 794, 913
MboII	GAAGA	5 cut(s)	40, 304, 668, 908, 911
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	1 cut(s)	788
MlyI	GAGTC	2 cut(s)	313, 863
MmeI	TCCRAC	1 cut(s)	889
MnlI	CCTC	7 cut(s)	68, 193, 211, 223, 361, 938, 952
Mph1103I	ATGCAT	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	958
MseI	TTAA	4 cut(s)	266, 432, 545, 606
MslI	CAYNNNNRTG	2 cut(s)	385, 697
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	959
Mva1269I	GAATGC	2 cut(s)	221, 753
MwoI	GCNNNNNNNGC	3 cut(s)	557, 711, 720
NdeII	GATC	3 cut(s)	124, 794, 913
NlaIII	CATG	7 cut(s)	72, 278, 283, 523, 709, 926, 937
NlaIV	GGNNCC	3 cut(s)	240, 492, 594
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	709
PaeI	GCATGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	2 cut(s)	221, 753
PfeI	GAWTC	1 cut(s)	739
PkrI	GCNGC	5 cut(s)	251, 358, 439, 704, 722
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	2 cut(s)	312, 863
PpsI	GAGTC	2 cut(s)	312, 863
PpuMI	RGGWCCY	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	240, 492, 594
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	913
PvuI	CGATCG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	204, 600
RsaNI	GTAC	2 cut(s)	203, 599
RseI	CAYNNNNRTG	2 cut(s)	385, 697
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	266, 432, 545, 606
SatI	GCNGC	5 cut(s)	250, 357, 438, 703, 721
Sau3AI	GATC	3 cut(s)	124, 794, 913
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	313, 863
SfaNI	GCATC	5 cut(s)	367, 389, 569, 592, 790
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	2 cut(s)	385, 697
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	1 cut(s)	788
SsiI	CCGC	1 cut(s)	718
SspMI	CTAG	5 cut(s)	227, 246, 404, 414, 450
TaaI	ACNGT	3 cut(s)	611, 736, 808
TaqI	TCGA	5 cut(s)	73, 118, 127, 418, 793
TasI	AATT	1 cut(s)	788
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	4 cut(s)	266, 432, 545, 606
Tru9I	TTAA	4 cut(s)	266, 432, 545, 606
TseI	GCWGC	5 cut(s)	249, 356, 437, 702, 720
TspDTI	ATGAA	6 cut(s)	40, 162, 300, 789, 911, 966
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	1 cut(s)	709
XmiI	GTMKAC	2 cut(s)	418, 840
XspI	CTAG	5 cut(s)	227, 246, 404, 414, 450
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.