Rh2BG445200

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001394
Physical Location & Seq
Reverse (-)
62969676 .. 62984887
15212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG445200.1

Sequence Viewer

Length: 633 bp
ATGGAAGAGAAAATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTGAAGCTCCTGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGTTTAGTAGTAAACTACAAAGGGAAAGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAACTGCCAAATGAGGCATTCCTAGAGAATTTGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGCACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGTTGATGCATCGAAATGGTACCTACAATCAATCAAGCTACAGGCATTGCAGGAATTGAGACAACCGACACTCTTAAGAAAATCCGGTCTGATGCAATTTTACGTCCAACAGGGGAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGGGACTCTGTTGCAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

210

Amino Acids

23.3

Weight (kDa)

8.41

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 13 - 134 2.5e-30 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 507
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 81, 235
AcuI CTGAAG 2 cut(s) 114, 314
AfaI GTAC 2 cut(s) 207, 395
AfiI CCNNNNNNNGG 1 cut(s) 601
AflII CTTAAG 1 cut(s) 448
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 4 cut(s) 98, 190, 255, 412
AluI AGCT 4 cut(s) 98, 190, 255, 412
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 427, 610
AlwI GGATC 1 cut(s) 135
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 3 cut(s) 359, 517, 623
ApoI RAATTY 2 cut(s) 81, 235
Asp718I GGTACC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 346, 529
BccI CCATC 3 cut(s) 277, 323, 595
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 427, 610
BfaI CTAG 2 cut(s) 230, 263
BfmI CTRYAG 1 cut(s) 413
BfrI CTTAAG 1 cut(s) 448
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 360, 518, 624
BlsI GCNGC 3 cut(s) 361, 519, 625
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 243, 395
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 5 cut(s) 53, 370, 392, 456, 529
BmuI ACTGGG 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 325, 581
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 2 cut(s) 76, 278
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse1I ACTGG 2 cut(s) 62, 118
Bse3DI GCAATG 1 cut(s) 419
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 76, 278
BseGI GGATG 2 cut(s) 288, 292
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMI GCAATG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 62, 118
BseXI GCAGC 2 cut(s) 346, 529
BshNI GGYRCC 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 601
BsmAI GTCTC 2 cut(s) 427, 610
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 127, 580
BspLI GGNNCC 2 cut(s) 243, 395
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 393
BspTI CTTAAG 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 419
BsrI ACTGG 2 cut(s) 62, 118
BssECI CCNNGG 2 cut(s) 76, 278
BssMI GATC 2 cut(s) 127, 580
Bst2UI CCWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 613
BstAFI CTTAAG 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 364
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 288, 292
BstKTI GATC 2 cut(s) 130, 583
BstMAI GTCTC 2 cut(s) 427, 610
BstMBI GATC 2 cut(s) 127, 580
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 346, 529
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 288, 292
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 92
Csp6I GTAC 2 cut(s) 206, 394
CviAII CATG 1 cut(s) 72
CviJI RGCY 5 cut(s) 98, 184, 190, 255, 412
CviKI_1 RGCY 5 cut(s) 98, 184, 190, 255, 412
CviQI GTAC 2 cut(s) 206, 394
DdeI CTNAG 1 cut(s) 364
DpnI GATC 2 cut(s) 129, 582
DpnII GATC 2 cut(s) 127, 580
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 610
Eco57I CTGAAG 2 cut(s) 114, 314
EcoRII CCWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 385
FaeI CATG 1 cut(s) 75
FaiI YATR 7 cut(s) 56, 58, 73, 166, 168, 343, 591
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 548
FatI CATG 1 cut(s) 71
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 360, 518, 624
FokI GGATG 2 cut(s) 295, 299
Fsp4HI GCNGC 3 cut(s) 360, 518, 624
FspBI CTAG 2 cut(s) 230, 263
GluI GCNGC 3 cut(s) 360, 518, 624
HapII CCGG 1 cut(s) 459
Hin1II CATG 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 536
HpaII CCGG 1 cut(s) 459
Hpy166II GTNNAC 2 cut(s) 148, 508
Hpy188I TCNGA 3 cut(s) 31, 94, 465
Hpy188III TCNNGA 2 cut(s) 568, 598
Hpy8I GTNNAC 2 cut(s) 148, 508
HpyAV CCTTC 5 cut(s) 13, 289, 495, 550, 565
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 5 cut(s) 44, 383, 424, 469, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 364
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 75
KpnI GGTACC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 127, 580
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 2 cut(s) 346, 529
LweI GCATC 5 cut(s) 53, 370, 392, 456, 529
MaeI CTAG 2 cut(s) 230, 263
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 129, 582
MboI GATC 2 cut(s) 127, 580
MboII GAAGA 3 cut(s) 17, 43, 600
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 81, 235, 428, 470
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 505, 556
MnlI CCTC 6 cut(s) 196, 214, 364, 525, 542, 605
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 269, 449
MslI CAYNNNNRTG 1 cut(s) 388
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 620
NdeII GATC 2 cut(s) 127, 580
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 243, 395
NsiI ATGCAT 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PctI GAATGC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 361, 519, 625
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 243, 395
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 2 cut(s) 207, 395
RsaNI GTAC 2 cut(s) 206, 394
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 2 cut(s) 269, 449
SatI GCNGC 3 cut(s) 360, 518, 624
Sau3AI GATC 2 cut(s) 127, 580
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 5 cut(s) 53, 370, 392, 456, 529
SfcI CTRYAG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 3 cut(s) 304, 448, 596
SmoI CTYRAG 3 cut(s) 304, 448, 596
Sse9I AATT 4 cut(s) 81, 235, 428, 470
SspMI CTAG 2 cut(s) 230, 263
StyD4I CCNGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 130, 386
TasI AATT 4 cut(s) 81, 235, 428, 470
Tru1I TTAA 2 cut(s) 269, 449
Tru9I TTAA 2 cut(s) 269, 449
TseI GCWGC 3 cut(s) 359, 517, 623
TspDTI ATGAA 2 cut(s) 43, 633
Vha464I CTTAAG 1 cut(s) 448
XapI RAATTY 2 cut(s) 81, 235
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 2 cut(s) 230, 263
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.