Rw5G013820

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001394
Physical Location & Seq
Reverse (-)
16343111 .. 16345950
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013820.1

Sequence Viewer

Length: 900 bp
ATGGAGAAGGCAGTTTCAGAAGTCAAAGTTGCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCTCATGTTACTCCTACTGGTTTTCGTTGGGATCGACAATGGTTAGTAGTAAACTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCAAAGCTTGCTTTGGTTGAGGTACAGCTGCCAAATGAGGCATTCCTAGAGAACTGGGAACCTACTAAAAGCTCTTATCTAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGGGTTTCAGTATGGGAATGGTCTGGTGCCGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGATACTGAATATGCTCCTGGACACCAAATAATGTTCTCCGATATGTATCCATACATGCTATTGTCTCAGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCCGAAGACCTATGGACAGATATCAGGATAGACAAGCTAACATTTCAGGTACCTACAATCAATCAAGCTACTGGCATTGCTGGAACTGAGCCAACCAACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTAATGAAGCAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

299

Amino Acids

33.24

Weight (kDa)

6.85

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 9 - 135 2.7e-36 MOSC N-terminal beta barrel domain
MOSC PF03473 158 - 285 1.2e-13 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 661
AccB1I GGYRCC 2 cut(s) 344, 661
AccI GTMKAC 2 cut(s) 409, 774
AciI CCGC 2 cut(s) 348, 418
AclWI GGATC 2 cut(s) 123, 529
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 3 cut(s) 302, 417, 569
AfaI GTAC 3 cut(s) 195, 298, 663
AfiI CCNNNNNNNGG 1 cut(s) 868
AflII CTTAAG 1 cut(s) 716
AjnI CCWGG 2 cut(s) 265, 466
Alw26I GTCTC 3 cut(s) 519, 795, 877
AlwI GGATC 2 cut(s) 123, 529
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 5 cut(s) 199, 428, 784, 890, 893
ApoI RAATTY 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 535
BanI GGYRCC 2 cut(s) 344, 661
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 3 cut(s) 186, 440, 796
BccI CCATC 3 cut(s) 265, 311, 862
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 267, 468
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 519, 795, 877
BfaI CTAG 5 cut(s) 218, 251, 395, 405, 441
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 716
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 1 cut(s) 847
BisI GCNGC 6 cut(s) 200, 348, 429, 785, 891, 894
BlsI GCNGC 6 cut(s) 201, 349, 430, 786, 892, 895
Bme1390I CCNGG 2 cut(s) 267, 468
BmiI GGNNCC 4 cut(s) 231, 346, 555, 663
BmrFI CCNGG 2 cut(s) 267, 468
BmrI ACTGGG 2 cut(s) 44, 235
BmsI GCATC 6 cut(s) 41, 358, 380, 520, 724, 796
BmuI ACTGGG 2 cut(s) 44, 235
BpiI GAAGAC 1 cut(s) 624
BpuEI CTTGAG 3 cut(s) 66, 313, 848
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 877
BsaJI CCNNGG 2 cut(s) 64, 266
BsaWI WCCGGW 1 cut(s) 726
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse1I ACTGG 6 cut(s) 50, 106, 230, 531, 563, 688
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 267, 468
BseDI CCNNGG 2 cut(s) 64, 266
BseGI GGATG 4 cut(s) 276, 280, 535, 605
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 2 cut(s) 530, 690
BseNI ACTGG 6 cut(s) 50, 106, 230, 531, 563, 688
BseXI GCAGC 3 cut(s) 186, 440, 796
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 2 cut(s) 344, 661
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 3 cut(s) 519, 795, 877
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 877
Bsp143I GATC 3 cut(s) 115, 521, 847
BspACI CCGC 2 cut(s) 348, 418
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 529, 691
BspLI GGNNCC 4 cut(s) 231, 346, 555, 663
BspPI GGATC 2 cut(s) 123, 529
BspT107I GGYRCC 2 cut(s) 344, 661
BspTI CTTAAG 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 6 cut(s) 50, 106, 230, 531, 563, 688
BssECI CCNNGG 2 cut(s) 64, 266
BssMI GATC 3 cut(s) 115, 521, 847
Bst2UI CCWGG 2 cut(s) 267, 468
Bst6I CTCTTC 1 cut(s) 880
BstAFI CTTAAG 1 cut(s) 716
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 352, 516, 699
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 4 cut(s) 276, 280, 535, 605
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 3 cut(s) 118, 524, 850
BstMAI GTCTC 3 cut(s) 519, 795, 877
BstMBI GATC 3 cut(s) 115, 521, 847
BstMWI GCNNNNNNNGC 2 cut(s) 541, 887
BstNI CCWGG 2 cut(s) 267, 468
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 2 cut(s) 265, 466
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 3 cut(s) 186, 440, 796
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 4 cut(s) 276, 280, 535, 605
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 194, 297, 662
CviAII CATG 3 cut(s) 60, 89, 505
CviQI GTAC 3 cut(s) 194, 297, 662
DdeI CTNAG 3 cut(s) 352, 516, 699
DpnI GATC 3 cut(s) 117, 523, 849
DpnII GATC 3 cut(s) 115, 521, 847
Eam1104I CTCTTC 1 cut(s) 880
EarI CTCTTC 1 cut(s) 880
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 877
Eco32I GATATC 1 cut(s) 634
Eco57I CTGAAG 3 cut(s) 302, 417, 569
EcoRII CCWGG 2 cut(s) 265, 466
EcoRV GATATC 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 3 cut(s) 63, 92, 508
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 3 cut(s) 59, 88, 504
FblI GTMKAC 2 cut(s) 409, 774
Fnu4HI GCNGC 6 cut(s) 200, 348, 429, 785, 891, 894
FokI GGATG 4 cut(s) 283, 287, 542, 612
Fsp4HI GCNGC 6 cut(s) 200, 348, 429, 785, 891, 894
FspBI CTAG 5 cut(s) 218, 251, 395, 405, 441
GlaI GCGC 1 cut(s) 534
GluI GCNGC 6 cut(s) 200, 348, 429, 785, 891, 894
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 727
HhaI GCGC 1 cut(s) 535
Hin1II CATG 3 cut(s) 63, 92, 508
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HincII GTYRAC 3 cut(s) 410, 568, 595
HindII GTYRAC 3 cut(s) 410, 568, 595
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 803
HpaI GTTAAC 2 cut(s) 568, 595
HpaII CCGG 1 cut(s) 727
Hpy166II GTNNAC 7 cut(s) 136, 299, 410, 568, 595, 605, 775
Hpy188I TCNGA 7 cut(s) 19, 388, 436, 490, 549, 616, 733
Hpy188III TCNNGA 3 cut(s) 637, 835, 865
Hpy8I GTNNAC 7 cut(s) 136, 299, 410, 568, 595, 605, 775
HpyAV CCTTC 5 cut(s) 277, 544, 762, 817, 832
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 4 cut(s) 32, 371, 428, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 887
HpyF3I CTNAG 3 cut(s) 352, 516, 699
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 3 cut(s) 63, 92, 508
HspAI GCGC 1 cut(s) 533
KpnI GGTACC 1 cut(s) 665
KspAI GTTAAC 2 cut(s) 568, 595
Kzo9I GATC 3 cut(s) 115, 521, 847
LmnI GCTCC 2 cut(s) 362, 469
Lsp1109I GCAGC 3 cut(s) 186, 440, 796
LweI GCATC 6 cut(s) 41, 358, 380, 520, 724, 796
MaeI CTAG 5 cut(s) 218, 251, 395, 405, 441
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 2 cut(s) 91, 808
MalI GATC 3 cut(s) 117, 523, 849
MboI GATC 3 cut(s) 115, 521, 847
MboII GAAGA 3 cut(s) 31, 629, 867
MflI RGATCY 1 cut(s) 847
MluCI AATT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 773, 823
MnlI CCTC 6 cut(s) 141, 184, 202, 352, 809, 872
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 5 cut(s) 257, 423, 567, 594, 717
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 2 cut(s) 267, 468
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 267, 468
MwoI GCNNNNNNNGC 2 cut(s) 541, 887
NdeII GATC 3 cut(s) 115, 521, 847
NlaIII CATG 3 cut(s) 63, 92, 508
NlaIV GGNNCC 4 cut(s) 231, 346, 555, 663
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 508
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 6 cut(s) 201, 349, 430, 786, 892, 895
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Psp6I CCWGG 2 cut(s) 265, 466
PspGI CCWGG 2 cut(s) 265, 466
PspN4I GGNNCC 4 cut(s) 231, 346, 555, 663
PsuI RGATCY 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 3 cut(s) 195, 298, 663
RsaNI GTAC 3 cut(s) 194, 297, 662
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 257, 423, 567, 594, 717
SatI GCNGC 6 cut(s) 200, 348, 429, 785, 891, 894
Sau3AI GATC 3 cut(s) 115, 521, 847
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 267, 468
SfaNI GCATC 6 cut(s) 41, 358, 380, 520, 724, 796
SfcI CTRYAG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 4 cut(s) 81, 292, 716, 863
SmoI CTYRAG 4 cut(s) 81, 292, 716, 863
Sse9I AATT 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 348, 418
SspMI CTAG 5 cut(s) 218, 251, 395, 405, 441
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 265, 466
TaiI ACGT 1 cut(s) 748
TaqI TCGA 3 cut(s) 118, 374, 409
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 350
Tru1I TTAA 5 cut(s) 257, 423, 567, 594, 717
Tru9I TTAA 5 cut(s) 257, 423, 567, 594, 717
TscAI CASTG 1 cut(s) 531
TseI GCWGC 5 cut(s) 199, 428, 784, 890, 893
TspDTI ATGAA 2 cut(s) 31, 900
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 716
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 409, 774
XspI CTAG 5 cut(s) 218, 251, 395, 405, 441
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.