Rw5G013830

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001394
Physical Location & Seq
Reverse (-)
16349209 .. 16352106
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013830.1

Sequence Viewer

Length: 918 bp
ATGGAGAAGCTACCATCACAAGAAGCCACAGCCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATTTCTGTCTCTGAAGCACCTATCACTCCTACTGGATTTCTATGGGATCGACAATGGTTAGTTATAAACGAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAGCTCGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGCTTGGGAACATACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAATTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCCGATGCATCAAAATGGTTTTCAGACTATCTTGGGAAACCTAGTCAACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTTGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGTTAGGCAGATTGAGATCATTCTTGTTGACGGTTGTGAACCATTTTCTGAAGATTTATGGACAGATGTCAGAATAAACAAGTTCACATTTCAATGCCGCATGCTGTGCTACCGCTGTAAGATACCTTCGGTGAATCAAGAGACTGGCATTCAAGGAACTGAGCCAAATGAAACTCTGAAGAAATTTCGATCGGATGCAATTGTTTATCCATCTCGGAAACAGCGTAGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGAATCTCTTATTGCCAGCGTGAAGGGAAATATCATAAAGATTGGAGATCTTGTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTGCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

305

Amino Acids

34.66

Weight (kDa)

6.38

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 11 - 138 4.3e-32 MOSC N-terminal beta barrel domain
MOSC PF03473 193 - 291 7.4e-09 MOSC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccI GTMKAC 1 cut(s) 792
AciI CCGC 3 cut(s) 655, 670, 911
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 330, 740
AcuI CTGAAG 5 cut(s) 111, 311, 426, 627, 755
AfaI GTAC 2 cut(s) 204, 288
AfiI CCNNNNNNNGG 1 cut(s) 886
AgsI TTSAA 4 cut(s) 179, 336, 650, 710
AjnI CCWGG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 855, 887
AluBI AGCT 5 cut(s) 10, 187, 208, 252, 440
AluI AGCT 5 cut(s) 10, 187, 208, 252, 440
Alw26I GTCTC 5 cut(s) 43, 91, 480, 558, 692
AlwI GGATC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 249, 356, 437
ApoI RAATTY 2 cut(s) 330, 740
AsuHPI GGTGA 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 667, 699
BbvI GCAGC 3 cut(s) 261, 343, 449
BccI CCATC 3 cut(s) 22, 320, 775
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 5 cut(s) 43, 91, 480, 558, 692
BfaI CTAG 5 cut(s) 227, 246, 414, 450, 809
BglII AGATCT 1 cut(s) 865
BisI GCNGC 4 cut(s) 250, 357, 438, 655
BlsI GCNGC 4 cut(s) 251, 358, 439, 656
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 373, 492
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 3 cut(s) 367, 389, 742
BoxI GACNNNNGTC 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 480
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 1 cut(s) 886
Bse1I ACTGG 3 cut(s) 59, 115, 706
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 289, 757
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 1 cut(s) 886
BseMII CTCAG 2 cut(s) 569, 708
BseNI ACTGG 3 cut(s) 59, 115, 706
BseXI GCAGC 3 cut(s) 261, 343, 449
Bsh1285I CGRYCG 1 cut(s) 749
BsiEI CGRYCG 1 cut(s) 749
BslI CCNNNNNNNGG 1 cut(s) 886
BsmAI GTCTC 5 cut(s) 43, 91, 480, 558, 692
BsmBI CGTCTC 1 cut(s) 558
BsmI GAATGC 2 cut(s) 221, 705
Bso31I GGTCTC 1 cut(s) 480
Bsp143I GATC 4 cut(s) 124, 573, 746, 865
BspACI CCGC 3 cut(s) 655, 670, 911
BspCNI CTCAG 2 cut(s) 568, 709
BspLI GGNNCC 2 cut(s) 373, 492
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 480
BsrI ACTGG 3 cut(s) 59, 115, 706
BssMI GATC 4 cut(s) 124, 573, 746, 865
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 465, 590
BstAPI GCANNNNNTGC 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 189, 659, 835
BstDEI CTNAG 3 cut(s) 361, 555, 717
BstF5I GGATG 2 cut(s) 289, 757
BstKTI GATC 4 cut(s) 127, 576, 749, 868
BstMAI GTCTC 5 cut(s) 43, 91, 480, 558, 692
BstMBI GATC 4 cut(s) 124, 573, 746, 865
BstMCI CGRYCG 1 cut(s) 749
BstMWI GCNNNNNNNGC 1 cut(s) 663
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 661
BstPAI GACNNNNGTC 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 3 cut(s) 261, 343, 449
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BtsCI GGATG 2 cut(s) 289, 757
Cac8I GCNNGC 3 cut(s) 189, 659, 835
CseI GACGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 203, 287
CviAII CATG 6 cut(s) 69, 280, 520, 658, 875, 886
CviQI GTAC 2 cut(s) 203, 287
DdeI CTNAG 3 cut(s) 361, 555, 717
DpnI GATC 4 cut(s) 126, 575, 748, 867
DpnII GATC 4 cut(s) 124, 573, 746, 865
Eco31I GGTCTC 1 cut(s) 480
Eco57I CTGAAG 5 cut(s) 111, 311, 426, 627, 755
EcoRII CCWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 6 cut(s) 72, 283, 523, 661, 878, 889
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FatI CATG 6 cut(s) 68, 279, 519, 657, 874, 885
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 250, 357, 438, 655
FokI GGATG 2 cut(s) 296, 764
Fsp4HI GCNGC 4 cut(s) 250, 357, 438, 655
FspBI CTAG 5 cut(s) 227, 246, 414, 450, 809
GluI GCNGC 4 cut(s) 250, 357, 438, 655
HgaI GACGC 1 cut(s) 540
Hin1II CATG 6 cut(s) 72, 283, 523, 661, 878, 889
HincII GTYRAC 2 cut(s) 419, 586
HindII GTYRAC 2 cut(s) 419, 586
HinfI GANTC 3 cut(s) 304, 691, 821
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 6 cut(s) 308, 419, 586, 596, 642, 793
Hpy188I TCNGA 9 cut(s) 91, 397, 445, 529, 607, 629, 735, 751, 774
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 6 cut(s) 308, 419, 586, 596, 642, 793
HpyAV CCTTC 3 cut(s) 693, 780, 835
HpyCH4III ACNGT 2 cut(s) 465, 590
HpyCH4V TGCA 4 cut(s) 380, 437, 755, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 663
HpyF3I CTNAG 3 cut(s) 361, 555, 717
Hsp92II CATG 6 cut(s) 72, 283, 523, 661, 878, 889
Kzo9I GATC 4 cut(s) 124, 573, 746, 865
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 3 cut(s) 261, 343, 449
LweI GCATC 3 cut(s) 367, 389, 742
MaeI CTAG 5 cut(s) 227, 246, 414, 450, 809
MalI GATC 4 cut(s) 126, 575, 748, 867
MboI GATC 4 cut(s) 124, 573, 746, 865
MboII GAAGA 4 cut(s) 40, 304, 620, 748
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 1 cut(s) 865
MluCI AATT 3 cut(s) 330, 740, 756
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 6 cut(s) 193, 211, 223, 361, 890, 904
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 3 cut(s) 63, 266, 432
MslI CAYNNNNRTG 2 cut(s) 385, 649
MspA1I CMGCKG 1 cut(s) 672
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 221, 705
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 663
NdeII GATC 4 cut(s) 124, 573, 746, 865
NlaIII CATG 6 cut(s) 72, 283, 523, 661, 878, 889
NlaIV GGNNCC 2 cut(s) 373, 492
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 661
PaeI GCATGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PctI GAATGC 2 cut(s) 221, 705
PfeI GAWTC 2 cut(s) 691, 821
PkrI GCNGC 4 cut(s) 251, 358, 439, 656
Ple19I CGATCG 1 cut(s) 749
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 623
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 373, 492
PsuI RGATCY 1 cut(s) 865
PvuI CGATCG 1 cut(s) 749
RsaI GTAC 2 cut(s) 204, 288
RsaNI GTAC 2 cut(s) 203, 287
RseI CAYNNNNRTG 2 cut(s) 385, 649
SaqAI TTAA 3 cut(s) 63, 266, 432
SatI GCNGC 4 cut(s) 250, 357, 438, 655
Sau3AI GATC 4 cut(s) 124, 573, 746, 865
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 3 cut(s) 367, 389, 742
SmiMI CAYNNNNRTG 2 cut(s) 385, 649
SphI GCATGC 1 cut(s) 661
Sse9I AATT 3 cut(s) 330, 740, 756
SsiI CCGC 3 cut(s) 655, 670, 911
SspMI CTAG 5 cut(s) 227, 246, 414, 450, 809
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 465, 590
TaqI TCGA 2 cut(s) 127, 745
TasI AATT 3 cut(s) 330, 740, 756
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 2 cut(s) 691, 821
Tru1I TTAA 3 cut(s) 63, 266, 432
Tru9I TTAA 3 cut(s) 63, 266, 432
TseI GCWGC 3 cut(s) 249, 356, 437
TspDTI ATGAA 4 cut(s) 40, 741, 863, 918
XapI RAATTY 2 cut(s) 330, 740
XceI RCATGY 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 5 cut(s) 227, 246, 414, 450, 809
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.