Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Reverse (-)

9197887 .. 9198441

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14871.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTCAAGGTGTTTTCTTCAAGAGAGGTTATTCTGCAACCAATTTTTCCACATCAGCTCTTGCTCTTAAAGCCTTTTGTGATGCAGACTGGGCAGGTGATCCTGATGATAGGAAATCTACTACTGGTTTTGTGATTTTACTCAATGATACTCCTGTGTCCTGGTGTAGTAAAAAGCAACGTGCAGTGTCTAGATCCTCCACTGAAGCTGCGTATAGAAGTATGGCAGATACAACTTCTGAACTCATGTGGCTTCTGCTCTTACTGAAGGATTTACATGTTCAACTTTCTGAAGTTCCAGTTCTTCATTGTGACAACATTTCAGCTTTAGCATTGGCTACTAATCCAGTATATCATTCAAAGTTAAAGCACATTGAAGTGGATGTGCATTTCACTCGCAATCAGGTGAAGGCTGGTTTTCTTAAGCTGCAGTTTGTTTCTTCTAAACATCAACTTGCAGATTTGTTTACCAAAGGCTTGTGCTCTCCACAACATCAGTTCTTATGTTCCAGCTTGATGCTTCACAATCACCATCAAGCTGAGGGAGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

185

Amino Acids

20.46

Weight (kDa)

8.23

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AclWI	GGATC	2 cut(s)	95, 189
AcuI	CTGAAG	3 cut(s)	225, 287, 312
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	22, 284, 360, 377
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	59, 209, 326, 427, 513, 539
AluI	AGCT	6 cut(s)	59, 209, 326, 427, 513, 539
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	95, 189
ApeKI	GCWGC	2 cut(s)	209, 427
AsuHPI	GGTGA	3 cut(s)	110, 418, 521
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
Bbv12I	GWGCWC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	196, 414
BccI	CCATC	1 cut(s)	540
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	210, 428
BlsI	GCNGC	2 cut(s)	211, 429
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	73, 507
BmuI	ACTGGG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	540
Bse1I	ACTGG	4 cut(s)	95, 130, 299, 347
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	388, 554
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	4 cut(s)	95, 130, 299, 347
BseXI	GCAGC	2 cut(s)	196, 414
BsgI	GTGCAG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	100, 194
BspCNI	CTCAG	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	95, 189
BspTI	CTTAAG	1 cut(s)	422
BsrI	ACTGG	4 cut(s)	95, 130, 299, 347
BssMI	GATC	2 cut(s)	100, 194
Bst2UI	CCWGG	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	388, 554
BstKTI	GATC	2 cut(s)	103, 197
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	100, 194
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	196, 414
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	388, 554
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 201
BveI	ACCTGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	247, 278
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	102, 196
DpnII	GATC	2 cut(s)	100, 194
Eco57I	CTGAAG	3 cut(s)	225, 287, 312
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	250, 281
FaiI	YATR	6 cut(s)	216, 224, 248, 279, 352, 505
FatI	CATG	2 cut(s)	246, 277
Fnu4HI	GCNGC	2 cut(s)	210, 428
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	210, 428
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	210, 428
Hin1II	CATG	2 cut(s)	250, 281
HphI	GGTGA	3 cut(s)	110, 418, 521
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	2 cut(s)	241, 292
Hpy188III	TCNNGA	3 cut(s)	22, 104, 192
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	2 cut(s)	262, 403
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	38, 86, 185, 388, 430, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	250, 281
Kzo9I	GATC	2 cut(s)	100, 194
Lsp1109I	GCAGC	2 cut(s)	196, 414
LweI	GCATC	2 cut(s)	73, 507
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	102, 196
MboI	GATC	2 cut(s)	100, 194
MboII	GAAGA	3 cut(s)	10, 296, 432
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	4 cut(s)	20, 208, 535, 539
MseI	TTAA	3 cut(s)	69, 365, 423
MslI	CAYNNNNRTG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NdeII	GATC	2 cut(s)	100, 194
NlaIII	CATG	2 cut(s)	250, 281
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	86
PciI	ACATGT	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	211, 429
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	69, 365, 423
SatI	GCNGC	2 cut(s)	210, 428
Sau3AI	GATC	2 cut(s)	100, 194
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	2 cut(s)	73, 507
SfcI	CTRYAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	6, 422
SmoI	CTYRAG	2 cut(s)	6, 422
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	184
TasI	AATT	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	69, 365, 423
Tru9I	TTAA	3 cut(s)	69, 365, 423
TscAI	CASTG	2 cut(s)	192, 208
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	209, 427
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	192, 208
Vha464I	CTTAAG	1 cut(s)	422
XbaI	TCTAGA	1 cut(s)	191
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.