Rw2G014210

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001471
Physical Location & Seq
Reverse (-)
15766688 .. 15767689
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014210.1

Sequence Viewer

Length: 1002 bp
ATGGTGTATCCTCTCCTCTATGTCGATGATATTATCATCACAGGCAATAGTGAGGTTCTCATTTCAGAAGTCAAGCAACTACTCCAAGCAGAGTTTGATATGAAGGACCTTGGTGATCTACACTACTTCCTGGGATTGGAAATTCAGTATAAGAATGCTGGCTTATTTGTTTCTCAGCAGAAGTATGCCAAAGAACTTGTACATAAGGCAGGTCTTGATGATTGTCACACACATTTAACTCCTTGCCAATCTGGTGTTAAGCTATACAATGATGGGAGCACTCTCTTAACTACATCTGACATACCACACTTCAGAAGTCTTGTTGGTTGTCTGCAGTATCTTACTTTTACCCGACCTGATATTGCATATAGTGTTAACTCTGTGTATCAATTCCTTCACTCCCCAACAGAGGCTCATCTTCATGCTGTGAAACGAATTCTAAGATATGTTAAAGGCACTCTTAATCATGGCATTTACTTCAGGAGGGGTGATCTCTCCAATCCACAATTTCATATTCATGCCTTTTGTGATGTAGACTGGGTCAGTGATCCAAATGACAGAAAATCAACCACGGGGTTTGTTATTCTTTTTAATCAGTCCCCTATCTCATGGTGTAGCAAGAAACAAACTGTTGTTTCACGATCGTCTACAGAAGCGGAATATAGAAGCATGGCAGACACATCTTTTGAACTTCTTTGGTTGCAGCATTTGTTCACTGATCTGCACTTGCATTTGGATAGTATTCCTACACTTCACTGTGACAATATTTATGCTCTTGCCCTTGCCACTAATCCTGTGTATCATTCAAAGCTTAAACATATTGAAGTTGATGTTCATTTCACTAGGGAACAGGTCAAGGCTGGCACCATTCGATTGCAATTTGTTACATCTCACGAACAGCTCGCCGATTTATTCACCAAGGGTCTTTGCTCTCCTCAACATCTTTATCTCTGTTCCAGCTTGATGCTCACACCCTCCCATCAAGCTGAGGAGGGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

333

Amino Acids

37.92

Weight (kDa)

6.21

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 6 - 82 3.4e-17 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 863
AccI GTMKAC 2 cut(s) 534, 647
AciI CCGC 1 cut(s) 656
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 2 cut(s) 141, 435
AcuI CTGAAG 2 cut(s) 295, 463
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 136, 409
AgsI TTSAA 3 cut(s) 689, 807, 824
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 5 cut(s) 262, 811, 901, 960, 986
AluI AGCT 5 cut(s) 262, 811, 901, 960, 986
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 703
ApoI RAATTY 2 cut(s) 141, 435
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 3 cut(s) 125, 500, 907
AvaII GGWCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 987
BbvI GCAGC 1 cut(s) 715
BccI CCATC 2 cut(s) 266, 987
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 18
BfaI CTAG 1 cut(s) 843
BfmI CTRYAG 2 cut(s) 332, 648
BfuAI ACCTGC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 1 cut(s) 704
BlsI GCNGC 1 cut(s) 705
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 865
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 1 cut(s) 954
BmuI ACTGGG 1 cut(s) 547
Bpu10I CCTNAGC 1 cut(s) 987
BsaJI CCNNGG 4 cut(s) 109, 130, 570, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 409
Bse1I ACTGG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 4 cut(s) 109, 130, 570, 918
BseLI CCNNNNNNNGG 2 cut(s) 136, 409
BseMII CTCAG 2 cut(s) 188, 978
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 2 cut(s) 5, 924
BseXI GCAGC 1 cut(s) 715
BsgI GTGCAG 1 cut(s) 707
Bsh1285I CGRYCG 1 cut(s) 644
BshNI GGYRCC 1 cut(s) 863
BsiEI CGRYCG 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 136, 409
BsmFI GGGAC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 115, 490, 547, 641, 718
BspACI CCGC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 187, 979
BspLI GGNNCC 1 cut(s) 865
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 1 cut(s) 542
BssECI CCNNGG 4 cut(s) 109, 130, 570, 918
BssMI GATC 5 cut(s) 115, 490, 547, 641, 718
BssT1I CCWWGG 2 cut(s) 109, 918
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 631, 758
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 160, 862, 903
BstDEI CTNAG 3 cut(s) 174, 440, 987
BstDSI CCRYGG 1 cut(s) 570
BstKTI GATC 5 cut(s) 118, 493, 550, 644, 721
BstMBI GATC 5 cut(s) 115, 490, 547, 641, 718
BstMCI CGRYCG 1 cut(s) 644
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 332, 648
BstV1I GCAGC 1 cut(s) 715
BsuI GTATCC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 550, 714, 754
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 3 cut(s) 160, 862, 903
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 5 cut(s) 422, 467, 518, 609, 670
CviJI RGCY 8 cut(s) 162, 262, 413, 811, 860, 901, 960, 986
CviKI_1 RGCY 8 cut(s) 162, 262, 413, 811, 860, 901, 960, 986
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 174, 440, 987
DpnI GATC 5 cut(s) 117, 492, 549, 643, 720
DpnII GATC 5 cut(s) 115, 490, 547, 641, 718
Eco130I CCWWGG 2 cut(s) 109, 918
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 295, 463
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 109, 918
ErhI CCWWGG 2 cut(s) 109, 918
FaeI CATG 5 cut(s) 425, 470, 521, 612, 673
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 583
FatI CATG 5 cut(s) 421, 466, 517, 608, 669
FblI GTMKAC 2 cut(s) 534, 647
Fnu4HI GCNGC 1 cut(s) 704
Fsp4HI GCNGC 1 cut(s) 704
FspBI CTAG 1 cut(s) 843
GluI GCNGC 1 cut(s) 704
Hin1II CATG 5 cut(s) 425, 470, 521, 612, 673
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 809
HpaI GTTAAC 1 cut(s) 376
HphI GGTGA 3 cut(s) 125, 500, 907
Hpy166II GTNNAC 4 cut(s) 376, 535, 648, 714
Hpy188I TCNGA 3 cut(s) 67, 298, 314
Hpy188III TCNNGA 4 cut(s) 215, 481, 639, 893
Hpy8I GTNNAC 4 cut(s) 376, 535, 648, 714
HpyAV CCTTC 2 cut(s) 97, 404
HpyCH4III ACNGT 2 cut(s) 631, 758
HpyCH4V TGCA 6 cut(s) 334, 365, 703, 724, 730, 877
HpyF3I CTNAG 3 cut(s) 174, 440, 987
Hsp92II CATG 5 cut(s) 425, 470, 521, 612, 673
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 115, 490, 547, 641, 718
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 1 cut(s) 954
MaeI CTAG 1 cut(s) 843
MaeIII GTNAC 3 cut(s) 224, 758, 883
MalI GATC 5 cut(s) 117, 492, 549, 643, 720
MboI GATC 5 cut(s) 115, 490, 547, 641, 718
MboII GAAGA 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 5 cut(s) 141, 389, 435, 506, 878
MnlI CCTC 9 cut(s) 21, 26, 46, 403, 477, 945, 982, 985, 985
MseI TTAA 9 cut(s) 236, 258, 287, 375, 450, 462, 591, 813, 1000
MslI CAYNNNNRTG 2 cut(s) 420, 516
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 131
NdeII GATC 5 cut(s) 115, 490, 547, 641, 718
NlaIII CATG 5 cut(s) 425, 470, 521, 612, 673
NlaIV GGNNCC 1 cut(s) 865
NmuCI GTSAC 2 cut(s) 224, 758
PctI GAATGC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 539
PkrI GCNGC 1 cut(s) 705
Ple19I CGATCG 1 cut(s) 644
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 865
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 539
PvuI CGATCG 1 cut(s) 644
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 2 cut(s) 420, 516
SaqAI TTAA 9 cut(s) 236, 258, 287, 375, 450, 462, 591, 813, 1000
SatI GCNGC 1 cut(s) 704
Sau3AI GATC 5 cut(s) 115, 490, 547, 641, 718
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 1 cut(s) 954
SfcI CTRYAG 2 cut(s) 332, 648
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 420, 516
Sse9I AATT 5 cut(s) 141, 389, 435, 506, 878
SsiI CCGC 1 cut(s) 656
SspI AATATT 1 cut(s) 766
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 109, 918
TaaI ACNGT 2 cut(s) 631, 758
TaqI TCGA 2 cut(s) 24, 871
TasI AATT 5 cut(s) 141, 389, 435, 506, 878
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 9 cut(s) 236, 258, 287, 375, 450, 462, 591, 813, 1000
Tru9I TTAA 9 cut(s) 236, 258, 287, 375, 450, 462, 591, 813, 1000
TscAI CASTG 3 cut(s) 550, 721, 761
TseFI GTSAC 2 cut(s) 224, 758
TseI GCWGC 1 cut(s) 703
Tsp45I GTSAC 2 cut(s) 224, 758
TspDTI ATGAA 5 cut(s) 116, 410, 500, 506, 824
TspRI CASTG 3 cut(s) 550, 721, 761
Tth111I GACNNNGTC 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 141, 435
XmiI GTMKAC 2 cut(s) 534, 647
XspI CTAG 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.