Mitochondrial protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00240 |
| fragaria_vesca | FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681 |
| malus_domestica | MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1 |
| pyrus_communis | pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210 |
| rosa_chinensis | RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081 |
| rosa_laevigata | RLG00000035859 |
| rosa_roxburghii | Rroxscaffold_4G00281750 |
| rosa_wichuraiana | Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1176 |
| AatII | GACGTC | 1 cut(s) | 1792 |
| Acc16I | TGCGCA | 1 cut(s) | 2375 |
| Acc36I | ACCTGC | 2 cut(s) | 289, 1176 |
| Acc65I | GGTACC | 1 cut(s) | 1308 |
| AccB1I | GGYRCC | 4 cut(s) | 1298, 1308, 1733, 2419 |
| AccI | GTMKAC | 2 cut(s) | 1191, 1712 |
| AccII | CGCG | 1 cut(s) | 1654 |
| AciI | CCGC | 6 cut(s) | 1557, 1652, 1703, 1766, 1887, 2136 |
| AclWI | GGATC | 4 cut(s) | 20, 1156, 2348, 2602 |
| AcoI | YGGCCR | 3 cut(s) | 1382, 1671, 2555 |
| AcsI | RAATTY | 5 cut(s) | 80, 128, 1009, 1796, 1823 |
| AcuI | CTGAAG | 1 cut(s) | 2229 |
| AcvI | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| AcyI | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| AfaI | GTAC | 7 cut(s) | 979, 1310, 1857, 1933, 2114, 2462, 2562 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 396, 1391, 1669, 1680, 1765, 2142, 2580 |
| AflIII | ACRYGT | 2 cut(s) | 2072, 2502 |
| AhlI | ACTAGT | 1 cut(s) | 2263 |
| AjnI | CCWGG | 3 cut(s) | 1272, 1282, 1422 |
| AluBI | AGCT | 7 cut(s) | 429, 506, 939, 944, 1399, 1752, 2484 |
| AluI | AGCT | 7 cut(s) | 429, 506, 939, 944, 1399, 1752, 2484 |
| Alw21I | GWGCWC | 1 cut(s) | 593 |
| Alw26I | GTCTC | 2 cut(s) | 1230, 1542 |
| AlwI | GGATC | 4 cut(s) | 20, 1156, 2348, 2602 |
| Ama87I | CYCGRG | 2 cut(s) | 1292, 1449 |
| ApeKI | GCWGC | 2 cut(s) | 1034, 1752 |
| ApoI | RAATTY | 5 cut(s) | 80, 128, 1009, 1796, 1823 |
| AseI | ATTAAT | 2 cut(s) | 1881, 2522 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 268 |
| Asp718I | GGTACC | 1 cut(s) | 1308 |
| AspA2I | CCTAGG | 1 cut(s) | 1562 |
| AspLEI | GCGC | 3 cut(s) | 1407, 1736, 2376 |
| AspS9I | GGNCC | 8 cut(s) | 1482, 1505, 1559, 1573, 1587, 1943, 2126, 2204 |
| AsuHPI | GGTGA | 4 cut(s) | 1198, 1318, 1688, 1948 |
| AsuII | TTCGAA | 1 cut(s) | 2662 |
| AvaI | CYCGRG | 2 cut(s) | 1292, 1449 |
| AvaII | GGWCC | 3 cut(s) | 1587, 1943, 2126 |
| AvrII | CCTAGG | 1 cut(s) | 1562 |
| BaeGI | GKGCMC | 1 cut(s) | 1301 |
| BanI | GGYRCC | 4 cut(s) | 1298, 1308, 1733, 2419 |
| BanII | GRGCYC | 1 cut(s) | 1273 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2421, 2453 |
| BauI | CACGAG | 1 cut(s) | 2234 |
| BbrPI | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| BbsI | GAAGAC | 2 cut(s) | 809, 1762 |
| Bbv12I | GWGCWC | 1 cut(s) | 593 |
| BbvI | GCAGC | 2 cut(s) | 1046, 1739 |
| BccI | CCATC | 6 cut(s) | 37, 1259, 1681, 1693, 2041, 2168 |
| BceAI | ACGGC | 2 cut(s) | 1537, 1560 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1150, 1184 |
| BciT130I | CCWGG | 3 cut(s) | 1274, 1284, 1424 |
| BcoDI | GTCTC | 2 cut(s) | 1230, 1542 |
| BcuI | ACTAGT | 1 cut(s) | 2263 |
| BfaI | CTAG | 5 cut(s) | 401, 1350, 1563, 2121, 2264 |
| BfmI | CTRYAG | 1 cut(s) | 549 |
| BfoI | RGCGCY | 2 cut(s) | 1408, 1737 |
| BfuAI | ACCTGC | 2 cut(s) | 289, 1176 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1558 |
| BisI | GCNGC | 3 cut(s) | 1035, 1704, 1753 |
| BlnI | CCTAGG | 1 cut(s) | 1562 |
| BlpI | GCTNAGC | 1 cut(s) | 940 |
| BlsI | GCNGC | 3 cut(s) | 1036, 1705, 1754 |
| Bme1390I | CCNGG | 3 cut(s) | 1274, 1284, 1424 |
| Bme18I | GGWCC | 3 cut(s) | 1587, 1943, 2126 |
| BmeT110I | CYCGRG | 2 cut(s) | 1292, 1449 |
| BmgT120I | GGNCC | 8 cut(s) | 1482, 1505, 1559, 1573, 1587, 1943, 2126, 2204 |
| BmrFI | CCNGG | 3 cut(s) | 1274, 1284, 1424 |
| BmsI | GCATC | 2 cut(s) | 619, 1715 |
| BpiI | GAAGAC | 2 cut(s) | 809, 1762 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1930, 1962 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 940 |
| Bpu14I | TTCGAA | 1 cut(s) | 2662 |
| BpuEI | CTTGAG | 4 cut(s) | 682, 1524, 1531, 2567 |
| BsaAI | YACGTR | 4 cut(s) | 1030, 1669, 1740, 2564 |
| BsaHI | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| BsaI | GGTCTC | 1 cut(s) | 1542 |
| BsaJI | CCNNGG | 8 cut(s) | 1183, 1272, 1282, 1293, 1422, 1478, 1562, 1729 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1029, 1059, 1881, 1911 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 396, 1391, 1669, 1680, 1765, 2142, 2580 |
| Bse118I | RCCGGY | 1 cut(s) | 1673 |
| Bse1I | ACTGG | 9 cut(s) | 181, 476, 584, 720, 864, 1437, 2387, 2476, 2558 |
| Bse3DI | GCAATG | 2 cut(s) | 666, 2299 |
| BseBI | CCWGG | 3 cut(s) | 1274, 1284, 1424 |
| BseDI | CCNNGG | 8 cut(s) | 1183, 1272, 1282, 1293, 1422, 1478, 1562, 1729 |
| BseGI | GGATG | 3 cut(s) | 130, 634, 2056 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 396, 1391, 1669, 1680, 1765, 2142, 2580 |
| BseMI | GCAATG | 2 cut(s) | 666, 2299 |
| BseMII | CTCAG | 2 cut(s) | 588, 1760 |
| BseNI | ACTGG | 9 cut(s) | 181, 476, 584, 720, 864, 1437, 2387, 2476, 2558 |
| BseSI | GKGCMC | 1 cut(s) | 1301 |
| BseX3I | CGGCCG | 1 cut(s) | 1382 |
| BseXI | GCAGC | 2 cut(s) | 1046, 1739 |
| BseYI | CCCAGC | 1 cut(s) | 1642 |
| BsgI | GTGCAG | 2 cut(s) | 1154, 1649 |
| Bsh1236I | CGCG | 1 cut(s) | 1654 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1385 |
| BshNI | GGYRCC | 4 cut(s) | 1298, 1308, 1733, 2419 |
| BsiEI | CGRYCG | 1 cut(s) | 1385 |
| BsiHKAI | GWGCWC | 1 cut(s) | 593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1292, 1449 |
| BsiSI | CCGG | 2 cut(s) | 1385, 1674 |
| BslFI | GGGAC | 2 cut(s) | 810, 2112 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 396, 1391, 1669, 1680, 1765, 2142, 2580 |
| BsmAI | GTCTC | 2 cut(s) | 1230, 1542 |
| BsmBI | CGTCTC | 1 cut(s) | 1230 |
| BsmFI | GGGAC | 2 cut(s) | 810, 2112 |
| BsmI | GAATGC | 3 cut(s) | 1982, 2376, 2616 |
| Bso31I | GGTCTC | 1 cut(s) | 1542 |
| BsoBI | CYCGRG | 2 cut(s) | 1292, 1449 |
| Bsp119I | TTCGAA | 1 cut(s) | 2662 |
| Bsp1286I | GDGCHC | 3 cut(s) | 593, 1273, 1301 |
| Bsp143I | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 940 |
| Bsp19I | CCATGG | 1 cut(s) | 1729 |
| BspACI | CCGC | 6 cut(s) | 1557, 1652, 1703, 1766, 1887, 2136 |
| BspCNI | CTCAG | 2 cut(s) | 589, 1759 |
| BspFNI | CGCG | 1 cut(s) | 1654 |
| BspMI | ACCTGC | 2 cut(s) | 289, 1176 |
| BspPI | GGATC | 4 cut(s) | 20, 1156, 2348, 2602 |
| BspT104I | TTCGAA | 1 cut(s) | 2662 |
| BspT107I | GGYRCC | 4 cut(s) | 1298, 1308, 1733, 2419 |
| BspTNI | GGTCTC | 1 cut(s) | 1542 |
| BsrDI | GCAATG | 2 cut(s) | 666, 2299 |
| BsrFI | RCCGGY | 1 cut(s) | 1673 |
| BsrI | ACTGG | 9 cut(s) | 181, 476, 584, 720, 864, 1437, 2387, 2476, 2558 |
| BssAI | RCCGGY | 1 cut(s) | 1673 |
| BssECI | CCNNGG | 8 cut(s) | 1183, 1272, 1282, 1293, 1422, 1478, 1562, 1729 |
| BssMI | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| BssNI | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| BssSI | CACGAG | 1 cut(s) | 2234 |
| BssT1I | CCWWGG | 3 cut(s) | 1478, 1562, 1729 |
| Bst2BI | CACGAG | 1 cut(s) | 2234 |
| Bst2UI | CCWGG | 3 cut(s) | 1274, 1284, 1424 |
| Bst4CI | ACNGT | 5 cut(s) | 497, 650, 824, 1929, 1936 |
| Bst6I | CTCTTC | 2 cut(s) | 1340, 1953 |
| BstACI | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2310 |
| BstBAI | YACGTR | 4 cut(s) | 1030, 1669, 1740, 2564 |
| BstBI | TTCGAA | 1 cut(s) | 2662 |
| BstC8I | GCNNGC | 2 cut(s) | 1559, 1664 |
| BstDEI | CTNAG | 4 cut(s) | 597, 940, 1456, 1746 |
| BstDSI | CCRYGG | 1 cut(s) | 1729 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 394 |
| BstF5I | GGATG | 3 cut(s) | 130, 634, 2056 |
| BstFNI | CGCG | 1 cut(s) | 1654 |
| BstH2I | RGCGCY | 2 cut(s) | 1408, 1737 |
| BstHHI | GCGC | 3 cut(s) | 1407, 1736, 2376 |
| BstKTI | GATC | 7 cut(s) | 28, 573, 790, 1164, 1355, 2356, 2597 |
| BstMAI | GTCTC | 2 cut(s) | 1230, 1542 |
| BstMBI | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| BstMCI | CGRYCG | 1 cut(s) | 1385 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 971, 1433, 1558, 2310 |
| BstNI | CCWGG | 3 cut(s) | 1274, 1284, 1424 |
| BstNSI | RCATGY | 5 cut(s) | 1964, 2028, 2076, 2313, 2506 |
| BstSCI | CCNGG | 3 cut(s) | 1272, 1282, 1422 |
| BstSFI | CTRYAG | 1 cut(s) | 549 |
| BstSLI | GKGCMC | 1 cut(s) | 1301 |
| BstUI | CGCG | 1 cut(s) | 1654 |
| BstV1I | GCAGC | 2 cut(s) | 1046, 1739 |
| BstV2I | GAAGAC | 2 cut(s) | 809, 1762 |
| BstZI | CGGCCG | 1 cut(s) | 1382 |
| BtgI | CCRYGG | 1 cut(s) | 1729 |
| BtgZI | GCGATG | 1 cut(s) | 1700 |
| BtsCI | GGATG | 3 cut(s) | 130, 634, 2056 |
| BtsIMutI | CAGTG | 3 cut(s) | 469, 646, 2394 |
| BveI | ACCTGC | 2 cut(s) | 289, 1176 |
| Cac8I | GCNNGC | 2 cut(s) | 1559, 1664 |
| CfoI | GCGC | 3 cut(s) | 1407, 1736, 2376 |
| Cfr10I | RCCGGY | 1 cut(s) | 1673 |
| Cfr13I | GGNCC | 8 cut(s) | 1482, 1505, 1559, 1573, 1587, 1943, 2126, 2204 |
| CseI | GACGC | 1 cut(s) | 1177 |
| Csp6I | GTAC | 7 cut(s) | 978, 1309, 1856, 1932, 2113, 2461, 2561 |
| CviQI | GTAC | 7 cut(s) | 978, 1309, 1856, 1932, 2113, 2461, 2561 |
| DdeI | CTNAG | 4 cut(s) | 597, 940, 1456, 1746 |
| DinI | GGCGCC | 1 cut(s) | 1735 |
| DpnI | GATC | 7 cut(s) | 27, 572, 789, 1163, 1354, 2355, 2596 |
| DpnII | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| DraI | TTTAAA | 1 cut(s) | 1518 |
| EaeI | YGGCCR | 3 cut(s) | 1382, 1671, 2555 |
| EagI | CGGCCG | 1 cut(s) | 1382 |
| Eam1104I | CTCTTC | 2 cut(s) | 1340, 1953 |
| EarI | CTCTTC | 2 cut(s) | 1340, 1953 |
| EclXI | CGGCCG | 1 cut(s) | 1382 |
| Eco130I | CCWWGG | 3 cut(s) | 1478, 1562, 1729 |
| Eco147I | AGGCCT | 2 cut(s) | 1427, 1567 |
| Eco24I | GRGCYC | 1 cut(s) | 1273 |
| Eco31I | GGTCTC | 1 cut(s) | 1542 |
| Eco32I | GATATC | 3 cut(s) | 136, 450, 2042 |
| Eco47I | GGWCC | 3 cut(s) | 1587, 1943, 2126 |
| Eco52I | CGGCCG | 1 cut(s) | 1382 |
| Eco57I | CTGAAG | 1 cut(s) | 2229 |
| Eco72I | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| Eco88I | CYCGRG | 2 cut(s) | 1292, 1449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 394 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2204 |
| EcoRI | GAATTC | 1 cut(s) | 128 |
| EcoRII | CCWGG | 3 cut(s) | 1272, 1282, 1422 |
| EcoRV | GATATC | 3 cut(s) | 136, 450, 2042 |
| EcoT14I | CCWWGG | 3 cut(s) | 1478, 1562, 1729 |
| EcoT22I | ATGCAT | 2 cut(s) | 1962, 1982 |
| EcoT38I | GRGCYC | 1 cut(s) | 1273 |
| EgeI | GGCGCC | 1 cut(s) | 1735 |
| EheI | GGCGCC | 1 cut(s) | 1735 |
| ErhI | CCWWGG | 3 cut(s) | 1478, 1562, 1729 |
| Esp3I | CGTCTC | 1 cut(s) | 1230 |
| FaqI | GGGAC | 2 cut(s) | 810, 2112 |
| FauI | CCCGC | 1 cut(s) | 1550 |
| FauNDI | CATATG | 1 cut(s) | 799 |
| FblI | GTMKAC | 2 cut(s) | 1191, 1712 |
| Fnu4HI | GCNGC | 3 cut(s) | 1035, 1704, 1753 |
| FokI | GGATG | 3 cut(s) | 137, 641, 2063 |
| FriOI | GRGCYC | 1 cut(s) | 1273 |
| Fsp4HI | GCNGC | 3 cut(s) | 1035, 1704, 1753 |
| FspBI | CTAG | 5 cut(s) | 401, 1350, 1563, 2121, 2264 |
| FspI | TGCGCA | 1 cut(s) | 2375 |
| GlaI | GCGC | 3 cut(s) | 1406, 1735, 2375 |
| GluI | GCNGC | 3 cut(s) | 1035, 1704, 1753 |
| GsaI | CCCAGC | 1 cut(s) | 1646 |
| HaeII | RGCGCY | 2 cut(s) | 1408, 1737 |
| HapII | CCGG | 2 cut(s) | 1385, 1674 |
| HgaI | GACGC | 1 cut(s) | 1177 |
| HhaI | GCGC | 3 cut(s) | 1407, 1736, 2376 |
| Hin1I | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| Hin6I | GCGC | 3 cut(s) | 1405, 1734, 2374 |
| HinP1I | GCGC | 3 cut(s) | 1405, 1734, 2374 |
| HincII | GTYRAC | 3 cut(s) | 1192, 1713, 2541 |
| HindII | GTYRAC | 3 cut(s) | 1192, 1713, 2541 |
| HindIII | AAGCTT | 1 cut(s) | 504 |
| HinfI | GANTC | 5 cut(s) | 269, 1358, 1631, 2156, 2626 |
| HpaI | GTTAAC | 1 cut(s) | 2541 |
| HpaII | CCGG | 2 cut(s) | 1385, 1674 |
| HphI | GGTGA | 4 cut(s) | 1198, 1318, 1688, 1948 |
| Hpy166II | GTNNAC | 9 cut(s) | 253, 278, 299, 1192, 1713, 1932, 1943, 2541, 2586 |
| Hpy188III | TCNNGA | 8 cut(s) | 77, 434, 713, 1141, 2546, 2592, 2598, 2623 |
| Hpy8I | GTNNAC | 9 cut(s) | 253, 278, 299, 1192, 1713, 1932, 1943, 2541, 2586 |
| Hpy99I | CGWCG | 4 cut(s) | 1193, 1418, 1714, 1791 |
| HpyAV | CCTTC | 4 cut(s) | 48, 320, 1339, 1578 |
| HpyCH4III | ACNGT | 5 cut(s) | 497, 650, 824, 1929, 1936 |
| HpyCH4IV | ACGT | 8 cut(s) | 1029, 1668, 1739, 1789, 1809, 2009, 2563, 2602 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 971, 1433, 1558, 2310 |
| HpyF3I | CTNAG | 4 cut(s) | 597, 940, 1456, 1746 |
| HpySE526I | ACGT | 8 cut(s) | 1029, 1668, 1739, 1789, 1809, 2009, 2563, 2602 |
| Hsp92I | GRCGYC | 3 cut(s) | 1188, 1734, 1789 |
| HspAI | GCGC | 3 cut(s) | 1405, 1734, 2374 |
| KasI | GGCGCC | 1 cut(s) | 1733 |
| KpnI | GGTACC | 1 cut(s) | 1312 |
| KspAI | GTTAAC | 1 cut(s) | 2541 |
| Kzo9I | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| LmnI | GCTCC | 3 cut(s) | 426, 637, 1268 |
| Lsp1109I | GCAGC | 2 cut(s) | 1046, 1739 |
| LweI | GCATC | 2 cut(s) | 619, 1715 |
| MaeI | CTAG | 5 cut(s) | 401, 1350, 1563, 2121, 2264 |
| MaeII | ACGT | 8 cut(s) | 1029, 1668, 1739, 1789, 1809, 2009, 2563, 2602 |
| MalI | GATC | 7 cut(s) | 27, 572, 789, 1163, 1354, 2355, 2596 |
| MboI | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| MhlI | GDGCHC | 3 cut(s) | 593, 1273, 1301 |
| Mly113I | GGCGCC | 1 cut(s) | 1734 |
| MmeI | TCCRAC | 1 cut(s) | 803 |
| Mph1103I | ATGCAT | 2 cut(s) | 1962, 1982 |
| MroXI | GAANNNNTTC | 1 cut(s) | 268 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2574 |
| MspI | CCGG | 2 cut(s) | 1385, 1674 |
| MspR9I | CCNGG | 3 cut(s) | 1274, 1284, 1424 |
| Mva1269I | GAATGC | 3 cut(s) | 1982, 2376, 2616 |
| MvaI | CCWGG | 3 cut(s) | 1274, 1284, 1424 |
| MvnI | CGCG | 1 cut(s) | 1654 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 971, 1433, 1558, 2310 |
| NarI | GGCGCC | 1 cut(s) | 1734 |
| NcoI | CCATGG | 1 cut(s) | 1729 |
| NdeI | CATATG | 1 cut(s) | 799 |
| NdeII | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| NmeAIII | GCCGAG | 1 cut(s) | 1164 |
| NmuCI | GTSAC | 2 cut(s) | 2389, 2564 |
| NsbI | TGCGCA | 1 cut(s) | 2375 |
| NsiI | ATGCAT | 2 cut(s) | 1962, 1982 |
| NspI | RCATGY | 5 cut(s) | 1964, 2028, 2076, 2313, 2506 |
| NspV | TTCGAA | 1 cut(s) | 2662 |
| PacI | TTAATTAA | 1 cut(s) | 2526 |
| PaeR7I | CTCGAG | 1 cut(s) | 1449 |
| PaqCI | CACCTGC | 1 cut(s) | 1176 |
| PceI | AGGCCT | 2 cut(s) | 1427, 1567 |
| PciI | ACATGT | 2 cut(s) | 2072, 2502 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1806, 2279, 2560 |
| PctI | GAATGC | 3 cut(s) | 1982, 2376, 2616 |
| PdmI | GAANNNNTTC | 1 cut(s) | 268 |
| PfeI | GAWTC | 5 cut(s) | 269, 1358, 1631, 2156, 2626 |
| PkrI | GCNGC | 3 cut(s) | 1036, 1705, 1754 |
| PluTI | GGCGCC | 1 cut(s) | 1737 |
| PmaCI | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| PmlI | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| Ppu21I | YACGTR | 4 cut(s) | 1030, 1669, 1740, 2564 |
| PscI | ACATGT | 2 cut(s) | 2072, 2502 |
| PshBI | ATTAAT | 2 cut(s) | 1881, 2522 |
| Psp6I | CCWGG | 3 cut(s) | 1272, 1282, 1422 |
| PspCI | CACGTG | 3 cut(s) | 1030, 1669, 1740 |
| PspFI | CCCAGC | 1 cut(s) | 1642 |
| PspGI | CCWGG | 3 cut(s) | 1272, 1282, 1422 |
| PspPI | GGNCC | 8 cut(s) | 1482, 1505, 1559, 1573, 1587, 1943, 2126, 2204 |
| PspXI | VCTCGAGB | 1 cut(s) | 1449 |
| RsaI | GTAC | 7 cut(s) | 979, 1310, 1857, 1933, 2114, 2462, 2562 |
| RsaNI | GTAC | 7 cut(s) | 978, 1309, 1856, 1932, 2113, 2461, 2561 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2574 |
| SalI | GTCGAC | 2 cut(s) | 1190, 1711 |
| SatI | GCNGC | 3 cut(s) | 1035, 1704, 1753 |
| Sau3AI | GATC | 7 cut(s) | 25, 570, 787, 1161, 1352, 2353, 2594 |
| Sau96I | GGNCC | 8 cut(s) | 1482, 1505, 1559, 1573, 1587, 1943, 2126, 2204 |
| ScrFI | CCNGG | 3 cut(s) | 1274, 1284, 1424 |
| SduI | GDGCHC | 3 cut(s) | 593, 1273, 1301 |
| SfaNI | GCATC | 2 cut(s) | 619, 1715 |
| SfcI | CTRYAG | 1 cut(s) | 549 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1558 |
| SfoI | GGCGCC | 1 cut(s) | 1735 |
| Sfr274I | CTCGAG | 1 cut(s) | 1449 |
| SfuI | TTCGAA | 1 cut(s) | 2662 |
| SinI | GGWCC | 3 cut(s) | 1587, 1943, 2126 |
| SlaI | CTCGAG | 1 cut(s) | 1449 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2574 |
| SmlI | CTYRAG | 5 cut(s) | 697, 1449, 1539, 1546, 2546 |
| SmoI | CTYRAG | 5 cut(s) | 697, 1449, 1539, 1546, 2546 |
| SpeI | ACTAGT | 1 cut(s) | 2263 |
| SseBI | AGGCCT | 2 cut(s) | 1427, 1567 |
| SsiI | CCGC | 6 cut(s) | 1557, 1652, 1703, 1766, 1887, 2136 |
| SspDI | GGCGCC | 1 cut(s) | 1733 |
| SspI | AATATT | 1 cut(s) | 2064 |
| SspMI | CTAG | 5 cut(s) | 401, 1350, 1563, 2121, 2264 |
| StuI | AGGCCT | 2 cut(s) | 1427, 1567 |
| StyD4I | CCNGG | 3 cut(s) | 1272, 1282, 1422 |
| StyI | CCWWGG | 3 cut(s) | 1478, 1562, 1729 |
| TaaI | ACNGT | 5 cut(s) | 497, 650, 824, 1929, 1936 |
| TaiI | ACGT | 8 cut(s) | 1032, 1671, 1742, 1792, 1812, 2012, 2566, 2605 |
| TatI | WGTACW | 3 cut(s) | 1855, 2112, 2460 |
| TauI | GCSGC | 1 cut(s) | 1706 |
| TfiI | GAWTC | 5 cut(s) | 269, 1358, 1631, 2156, 2626 |
| TscAI | CASTG | 3 cut(s) | 476, 653, 2394 |
| TseFI | GTSAC | 2 cut(s) | 2389, 2564 |
| TseI | GCWGC | 2 cut(s) | 1034, 1752 |
| Tsp45I | GTSAC | 2 cut(s) | 2389, 2564 |
| TspDTI | ATGAA | 8 cut(s) | 17, 74, 141, 261, 759, 994, 1119, 2001 |
| TspGWI | ACGGA | 2 cut(s) | 1885, 2205 |
| TspRI | CASTG | 3 cut(s) | 476, 653, 2394 |
| VpaK11BI | GGWCC | 3 cut(s) | 1587, 1943, 2126 |
| VspI | ATTAAT | 2 cut(s) | 1881, 2522 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 394 |
| XapI | RAATTY | 5 cut(s) | 80, 128, 1009, 1796, 1823 |
| XceI | RCATGY | 5 cut(s) | 1964, 2028, 2076, 2313, 2506 |
| XhoI | CTCGAG | 1 cut(s) | 1449 |
| XmaJI | CCTAGG | 1 cut(s) | 1562 |
| XmiI | GTMKAC | 2 cut(s) | 1191, 1712 |
| XmnI | GAANNNNTTC | 1 cut(s) | 268 |
| XspI | CTAG | 5 cut(s) | 401, 1350, 1563, 2121, 2264 |
| ZraI | GACGTC | 1 cut(s) | 1790 |
| Zsp2I | ATGCAT | 2 cut(s) | 1962, 1982 |