Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

17533009 .. 17537696

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGCTCTCATGAGTTTGCTTATGGCTACTTTAGATGAAGATATTGACAAGGCATCAAAGATAATTCTCTATCAAGGAAAGAGCAGTGAAGATGGCTTGTTTCTCTTCAAGACACCACAACTTTCAGCAATAAACCAACTATCTCATACTGCTTTGAAGGAAAAATGCATAGACTGTCATTTCCTGAATCTGCATCACATTGTACTGTACCTTTCCACAAAATACATTCTGATGATGCCCTGCAAGTCTCTTCACATGTCTTCTCCATATGAACTTCTATTTCACAAGCCTCCTGATGTGTCTCAGCTTAAGGTGTTTGGTTCTTCTTGCTATCCATTTCGTAGACCCTATACTCATGATAAGCTTGATCCAAGAACAACTCAGTGTGTGTTCTTAGGTTATGCTCTCGGATATAAAGGAGTCTTTTGCTATAGTATTTCTCAAAACAAACTGTGGATGTCAAGACATGTTGTTCATGATGAAACCACATTCCCATATCTGTTACCTTCTCAACCTTCAACCTCACAGCTTGATCCTGTGACTTACTTTCCTAGTTCTTCTTGGACGCCTGCATCTGTGCAGTCTTCTTCTATGTCATGTGCTCCGACTCCTATTGCTCCTTCCACTGAGGTCCAAGGTGACTCTATTCATGATGTGTTGTTGAATGGTGATCATAGCACTGACAATCTCCATGCCAATCATACTCATCAAAGTAGGGATTCTCAGCCTCACACAACTCATGATATCCCATTGTCACAATCACCAGATACTATTGTTTCTCATACTGAGTATGTTGATATCCACCCTGCAAGAGACTCACAACCTCAAGTAGCTGATTCAATGGGTGGTAACATTGAGACTGTTCTTCCTCTGAATAGTGTTTCTGATGATATGCAAGTTATGCAAGTTGGCCATGAACACACATCTTCTACTTGTGTTCCTGATGCTATGCAAGTTGATCAAGAACACACATCTTCTGTTGCACCTGATCATCCTAGTATTGCACCTTTTCAGGGCCTCAATGCAAATGAGCTTAATACCTTACAATTTGGAGGACTGAATAACACAGCTGCAGATGCTTTACCTCAAGACCTCAACTTCATCATGGATCAAAACTACAATGATCACTCAATGATGACTCGGGCCAAGAATGGCATCATCAAATCTAAAACATTTGAAGACTATTTTTGCTTCTCTGCCATTGTTCAACAGAAACTCTATGATGAATATAAGGCCAGGTTGGTTGCACAAGGCTACAGTCAATCAAAAGGCCTGGATTATGATGAGACCTTCAGTCCTGTTGTGAGGCACGGCATTGTCAGAGTGATCATTGCACTGGCTGCTATGAATAATTGGGAACTACGACAGTTGGATGTGAAAAATGCATTTCTGCATGGAGATTTGAAAGAAGAAGTTTATATGGCTCAACCTCCTGGTTTTGTTGATCTAGTTCACAGGGATTATGTATGTCTCTTAAAGAAATCTCTGTATGGATTAAAGCAAGTTCCACGAGCATGGAATGAAAAATTGACAAGCTTTCTTCCAAATGATATTGTGATTACTGGTTCCGATACCACTGGAATCCATGAGGTGATATCGGAGCTAAGTATGGTCTTTGATATGAAAGATCTTGGTCCTTTGACTTATTTTCTTGGTCTGGAAGTTACCAAGGTGAAACAAGGAATATTTCTGGGTCAAACTAAGTATGCTAAAGATCTCCTTGTCAAGGCAGGAATGGATACAGTTCGTCCGTGTAGTTCTCCTTGTCTCCCTCATTGTCATATGACTAAAGATCAAGTCCCTACTGATGTTCATTTTACTGCTGTCAAGCGAATACTTCGATATCTTCAAGGCACTACTCATAAAGGCTTGTTTTATAGCCCAGCATTCTGTGATGCAGACTGGGCAGGTGAAGTTATTCAACGTCGATCAACCACTGGGTTTGTAGTTTCTCTTGGTCTGTGTCCTATTTCATGGCAGTCAAAGAAACAGGGCACCGTTTCCCGAAGTTCCACTGAAGCTGAATATAGAAGCCTAGCTAATACTGCAGCTGAAATAAGTTGGATTAGGCATCTTCTTTGTGACATGAGGATTTCTATTCCTACGGCTCCCTTGATTAAGTGTGATAACTTGTCTGCAATAGCTCTTGCCTCCAATCCAGTGTTTCACTCTAAGATCAAACACTTGGATAATGATTTCCATTTTGTTCGCGAACGTGTTCAGCGCAACGATCTGTGTCTTGCTTATGTACCTACAACTGATCAAACTGCAGACATATTGACCAAAGGGTTACCTTCTCCTCTCTTTCGCACTCATTGTATCAATCTCAGGCTAGTTCCCCTAGCTGAGCTTGAGGAGGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

788

Amino Acids

88.15

Weight (kDa)

6.12

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	108 - 168	1.8e-15	Retroviral polymerase SH3-like domain
RVT_2	PF07727	406 - 514	1.1e-38	Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2	PF07727	516 - 590	1.1e-10	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1898
Acc36I	ACCTGC	1 cut(s)	1898
AccB1I	GGYRCC	1 cut(s)	1994
AccI	GTMKAC	1 cut(s)	343
AccII	CGCG	1 cut(s)	2211
AclWI	GGATC	3 cut(s)	362, 527, 1116
AcoI	YGGCCR	1 cut(s)	910
AcuI	CTGAAG	2 cut(s)	1276, 2037
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	3 cut(s)	204, 209, 2250
AfiI	CCNNNNNNNGG	2 cut(s)	1013, 1726
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	3 cut(s)	255, 466, 2215
AhdI	GACNNNNNGTC	1 cut(s)	1293
AjnI	CCWGG	3 cut(s)	1235, 1272, 1432
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	7 cut(s)	252, 306, 807, 851, 1280, 1475, 1772
AlwI	GGATC	3 cut(s)	362, 527, 1116
Ama87I	CYCGRG	1 cut(s)	1140
AoxI	GGCC	5 cut(s)	910, 1015, 1143, 1233, 1270
ApeKI	GCWGC	3 cut(s)	1070, 1340, 2048
Asp700I	GAANNNNTTC	2 cut(s)	1917, 2217
AspLEI	GCGC	1 cut(s)	2226
AspS9I	GGNCC	4 cut(s)	631, 1015, 1143, 1634
AsuHPI	GGTGA	6 cut(s)	650, 680, 753, 1603, 1684, 1922
AvaI	CYCGRG	1 cut(s)	1140
AvaII	GGWCC	2 cut(s)	631, 1634
BaeGI	GKGCMC	1 cut(s)	1997
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	1 cut(s)	1994
BauI	CACGAG	1 cut(s)	1509
BbsI	GAAGAC	3 cut(s)	252, 576, 1185
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	1057, 1327, 2060
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	1327, 2121
BciT130I	CCWGG	3 cut(s)	1237, 1274, 1434
BciVI	GTATCC	1 cut(s)	1732
BclI	TGATCA	6 cut(s)	670, 958, 988, 1123, 1326, 2260
BcoDI	GTCTC	7 cut(s)	252, 306, 807, 851, 1280, 1475, 1772
BfaI	CTAG	6 cut(s)	552, 996, 1448, 2036, 2333, 2342
BfmI	CTRYAG	5 cut(s)	430, 1071, 1255, 2046, 2268
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	1898
BfuI	GTATCC	1 cut(s)	1732
BglII	AGATCT	2 cut(s)	1627, 1714
BisI	GCNGC	3 cut(s)	1071, 1341, 2049
BlpI	GCTNAGC	1 cut(s)	2346
BlsI	GCNGC	3 cut(s)	1072, 1342, 2050
Bme1390I	CCNGG	3 cut(s)	1237, 1274, 1434
Bme18I	GGWCC	2 cut(s)	631, 1634
BmeRI	GACNNNNNGTC	1 cut(s)	1293
BmeT110I	CYCGRG	1 cut(s)	1140
BmgT120I	GGNCC	4 cut(s)	631, 1015, 1143, 1634
BmiI	GGNNCC	3 cut(s)	1567, 1996, 2109
BmrFI	CCNGG	3 cut(s)	1237, 1274, 1434
BmrI	ACTGGG	2 cut(s)	1912, 1947
BmsI	GCATC	9 cut(s)	62, 202, 225, 581, 934, 1066, 1164, 1885, 2080
BmuI	ACTGGG	2 cut(s)	1912, 1947
BpiI	GAAGAC	3 cut(s)	252, 576, 1185
Bpu1102I	GCTNAGC	1 cut(s)	2346
BpuEI	CTTGAG	2 cut(s)	810, 1071
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	1280
BsaJI	CCNNGG	2 cut(s)	634, 1668
Bsc4I	CCNNNNNNNGG	2 cut(s)	1013, 1726
Bse1I	ACTGG	6 cut(s)	1341, 1567, 1582, 1907, 1942, 2159
Bse3DI	GCAATG	1 cut(s)	1329
BseBI	CCWGG	3 cut(s)	1237, 1274, 1434
BseDI	CCNNGG	2 cut(s)	634, 1668
BseGI	GGATG	4 cut(s)	462, 991, 1378, 2366
BseLI	CCNNNNNNNGG	2 cut(s)	1013, 1726
BseMI	GCAATG	1 cut(s)	1329
BseMII	CTCAG	7 cut(s)	317, 395, 618, 737, 777, 2337, 2341
BseNI	ACTGG	6 cut(s)	1341, 1567, 1582, 1907, 1942, 2159
BseRI	GAGGAG	1 cut(s)	2289
BseSI	GKGCMC	1 cut(s)	1997
BseXI	GCAGC	3 cut(s)	1057, 1327, 2060
BseYI	CCCAGC	1 cut(s)	1882
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	2211
BshFI	GGCC	5 cut(s)	912, 1017, 1145, 1235, 1272
BshNI	GGYRCC	1 cut(s)	1994
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	1140
BslFI	GGGAC	1 cut(s)	1784
BslI	CCNNNNNNNGG	2 cut(s)	1013, 1726
BsmAI	GTCTC	7 cut(s)	252, 306, 807, 851, 1280, 1475, 1772
BsmFI	GGGAC	1 cut(s)	1784
BsmI	GAATGC	1 cut(s)	1886
BsnI	GGCC	5 cut(s)	912, 1017, 1145, 1235, 1272
Bso31I	GGTCTC	1 cut(s)	1280
BsoBI	CYCGRG	1 cut(s)	1140
Bsp1286I	GDGCHC	2 cut(s)	604, 1997
Bsp1720I	GCTNAGC	1 cut(s)	2346
Bsp68I	TCGCGA	1 cut(s)	2211
BspANI	GGCC	5 cut(s)	912, 1017, 1145, 1235, 1272
BspCNI	CTCAG	7 cut(s)	316, 394, 619, 736, 778, 2338, 2340
BspFNI	CGCG	1 cut(s)	2211
BspHI	TCATGA	5 cut(s)	9, 355, 475, 649, 739
BspLI	GGNNCC	3 cut(s)	1567, 1996, 2109
BspMAI	CTGCAG	3 cut(s)	1075, 2050, 2272
BspMI	ACCTGC	1 cut(s)	1898
BspPI	GGATC	3 cut(s)	362, 527, 1116
BspT107I	GGYRCC	1 cut(s)	1994
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	1280
BsrDI	GCAATG	1 cut(s)	1329
BsrI	ACTGG	6 cut(s)	1341, 1567, 1582, 1907, 1942, 2159
BssECI	CCNNGG	2 cut(s)	634, 1668
BssNI	GRCGYC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	1509
BssT1I	CCWWGG	2 cut(s)	634, 1668
Bst2BI	CACGAG	1 cut(s)	1509
Bst2UI	CCWGG	3 cut(s)	1237, 1274, 1434
Bst4CI	ACNGT	8 cut(s)	176, 207, 453, 862, 1259, 1368, 1744, 1999
Bst6I	CTCTTC	2 cut(s)	110, 255
BstACI	GRCGYC	1 cut(s)	566
BstAFI	CTTAAG	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	901, 1340
BstC8I	GCNNGC	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	2289
BstENI	CCTNNNNNAGG	1 cut(s)	1724
BstF5I	GGATG	4 cut(s)	462, 991, 1378, 2366
BstFNI	CGCG	1 cut(s)	2211
BstHHI	GCGC	1 cut(s)	2226
BstMAI	GTCTC	7 cut(s)	252, 306, 807, 851, 1280, 1475, 1772
BstMWI	GCNNNNNNNGC	5 cut(s)	901, 1076, 1340, 1904, 2045
BstNI	CCWGG	3 cut(s)	1237, 1274, 1434
BstNSI	RCATGY	2 cut(s)	259, 470
BstPI	GGTNACC	1 cut(s)	2289
BstSCI	CCNGG	3 cut(s)	1235, 1272, 1432
BstSFI	CTRYAG	5 cut(s)	430, 1071, 1255, 2046, 2268
BstSLI	GKGCMC	1 cut(s)	1997
BstUI	CGCG	1 cut(s)	2211
BstV1I	GCAGC	3 cut(s)	1057, 1327, 2060
BstV2I	GAAGAC	3 cut(s)	252, 576, 1185
BstX2I	RGATCY	2 cut(s)	1627, 1714
BstXI	CCANNNNNNTGG	1 cut(s)	1515
BstYI	RGATCY	2 cut(s)	1627, 1714
BsuI	GTATCC	1 cut(s)	1732
BsuRI	GGCC	5 cut(s)	912, 1017, 1145, 1235, 1272
BtsCI	GGATG	4 cut(s)	462, 991, 1378, 2366
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	9 cut(s)	91, 389, 624, 678, 1334, 1575, 1935, 2013, 2166
BtuMI	TCGCGA	1 cut(s)	2211
BveI	ACCTGC	1 cut(s)	1898
Cac8I	GCNNGC	1 cut(s)	570
CciI	TCATGA	5 cut(s)	9, 355, 475, 649, 739
CfoI	GCGC	1 cut(s)	2226
Cfr13I	GGNCC	4 cut(s)	631, 1015, 1143, 1634
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	203, 208, 2249
CspCI	CAANNNNNGTGG	2 cut(s)	1924, 1959
CviQI	GTAC	3 cut(s)	203, 208, 2249
DriI	GACNNNNNGTC	1 cut(s)	1293
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	110, 255
Eam1105I	GACNNNNNGTC	1 cut(s)	1293
EarI	CTCTTC	2 cut(s)	110, 255
Eco130I	CCWWGG	2 cut(s)	634, 1668
Eco147I	AGGCCT	1 cut(s)	1272
Eco31I	GGTCTC	1 cut(s)	1280
Eco32I	GATATC	4 cut(s)	745, 799, 1596, 1844
Eco47I	GGWCC	2 cut(s)	631, 1634
Eco57I	CTGAAG	2 cut(s)	1276, 2037
Eco88I	CYCGRG	1 cut(s)	1140
Eco91I	GGTNACC	1 cut(s)	2289
EcoNI	CCTNNNNNAGG	1 cut(s)	1724
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoO65I	GGTNACC	1 cut(s)	2289
EcoRII	CCWGG	3 cut(s)	1235, 1272, 1432
EcoRV	GATATC	4 cut(s)	745, 799, 1596, 1844
EcoT14I	CCWWGG	2 cut(s)	634, 1668
EcoT22I	ATGCAT	2 cut(s)	170, 1387
ErhI	CCWWGG	2 cut(s)	634, 1668
FalI	AAGNNNNNCTT	2 cut(s)	1704, 1736
FaqI	GGGAC	1 cut(s)	1784
FauNDI	CATATG	2 cut(s)	268, 1782
FbaI	TGATCA	6 cut(s)	670, 958, 988, 1123, 1326, 2260
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	1071, 1341, 2049
FokI	GGATG	3 cut(s)	469, 978, 1385
Fsp4HI	GCNGC	3 cut(s)	1071, 1341, 2049
FspBI	CTAG	6 cut(s)	552, 996, 1448, 2036, 2333, 2342
GlaI	GCGC	1 cut(s)	2225
GluI	GCNGC	3 cut(s)	1071, 1341, 2049
GsaI	CCCAGC	1 cut(s)	1886
HaeIII	GGCC	5 cut(s)	912, 1017, 1145, 1235, 1272
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	1 cut(s)	2226
Hin1I	GRCGYC	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	2224
HinP1I	GCGC	1 cut(s)	2224
HindIII	AAGCTT	2 cut(s)	362, 1534
HinfI	GANTC	9 cut(s)	187, 420, 607, 641, 719, 815, 836, 1138, 1581
HphI	GGTGA	6 cut(s)	650, 680, 753, 1603, 1684, 1922
Hpy166II	GTNNAC	2 cut(s)	344, 1453
Hpy188I	TCNGA	8 cut(s)	231, 410, 606, 873, 886, 1322, 1570, 1600
Hpy8I	GTNNAC	2 cut(s)	344, 1453
Hpy99I	CGWCG	1 cut(s)	1929
HpyAV	CCTTC	6 cut(s)	151, 516, 525, 630, 1300, 2304
HpyCH4III	ACNGT	8 cut(s)	176, 207, 453, 862, 1259, 1368, 1744, 1999
HpyCH4IV	ACGT	2 cut(s)	1924, 2215
HpyF10VI	GCNNNNNNNGC	5 cut(s)	901, 1076, 1340, 1904, 2045
HpySE526I	ACGT	2 cut(s)	1924, 2215
Hsp92I	GRCGYC	1 cut(s)	566
HspAI	GCGC	1 cut(s)	2224
Ksp22I	TGATCA	6 cut(s)	670, 958, 988, 1123, 1326, 2260
LmnI	GCTCC	4 cut(s)	607, 622, 1600, 2113
Lsp1109I	GCAGC	3 cut(s)	1057, 1327, 2060
LweI	GCATC	9 cut(s)	62, 202, 225, 581, 934, 1066, 1164, 1885, 2080
MaeI	CTAG	6 cut(s)	552, 996, 1448, 2036, 2333, 2342
MaeII	ACGT	2 cut(s)	1924, 2215
MaeIII	GTNAC	8 cut(s)	501, 538, 638, 753, 848, 1663, 2081, 2289
MflI	RGATCY	2 cut(s)	1627, 1714
MhlI	GDGCHC	2 cut(s)	604, 1997
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	4 cut(s)	63, 1046, 1351, 1526
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	5 cut(s)	429, 601, 635, 809, 1132
MmeI	TCCRAC	3 cut(s)	629, 1350, 2042
Mox20I	TGGCCA	1 cut(s)	912
Mph1103I	ATGCAT	2 cut(s)	170, 1387
MroXI	GAANNNNTTC	2 cut(s)	1917, 2217
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	6 cut(s)	309, 1035, 1475, 1496, 2118, 2365
MslI	CAYNNNNRTG	2 cut(s)	230, 1513
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	2 cut(s)	1070, 2051
MspCI	CTTAAG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	1237, 1274, 1434
Mva1269I	GAATGC	1 cut(s)	1886
MvaI	CCWGG	3 cut(s)	1237, 1274, 1434
MvnI	CGCG	1 cut(s)	2211
MwoI	GCNNNNNNNGC	5 cut(s)	901, 1076, 1340, 1904, 2045
NdeI	CATATG	2 cut(s)	268, 1782
NlaIV	GGNNCC	3 cut(s)	1567, 1996, 2109
NmuCI	GTSAC	4 cut(s)	538, 638, 753, 2081
NruI	TCGCGA	1 cut(s)	2211
NsiI	ATGCAT	2 cut(s)	170, 1387
NspI	RCATGY	2 cut(s)	259, 470
PagI	TCATGA	5 cut(s)	9, 355, 475, 649, 739
PaqCI	CACCTGC	1 cut(s)	1898
PceI	AGGCCT	1 cut(s)	1272
PciI	ACATGT	2 cut(s)	255, 466
PctI	GAATGC	1 cut(s)	1886
PdmI	GAANNNNTTC	2 cut(s)	1917, 2217
PfeI	GAWTC	4 cut(s)	187, 719, 836, 1581
PkrI	GCNGC	3 cut(s)	1072, 1342, 2050
PleI	GAGTC	5 cut(s)	428, 601, 635, 809, 1132
PpsI	GAGTC	5 cut(s)	428, 601, 635, 809, 1132
PscI	ACATGT	2 cut(s)	255, 466
Psp6I	CCWGG	3 cut(s)	1235, 1272, 1432
PspEI	GGTNACC	1 cut(s)	2289
PspFI	CCCAGC	1 cut(s)	1882
PspGI	CCWGG	3 cut(s)	1235, 1272, 1432
PspN4I	GGNNCC	3 cut(s)	1567, 1996, 2109
PspPI	GGNCC	4 cut(s)	631, 1015, 1143, 1634
PstI	CTGCAG	3 cut(s)	1075, 2050, 2272
PsuI	RGATCY	2 cut(s)	1627, 1714
PvuII	CAGCTG	2 cut(s)	1070, 2051
RruI	TCGCGA	1 cut(s)	2211
RsaI	GTAC	3 cut(s)	204, 209, 2250
RsaNI	GTAC	3 cut(s)	203, 208, 2249
RseI	CAYNNNNRTG	2 cut(s)	230, 1513
SaqAI	TTAA	6 cut(s)	309, 1035, 1475, 1496, 2118, 2365
SatI	GCNGC	3 cut(s)	1071, 1341, 2049
Sau96I	GGNCC	4 cut(s)	631, 1015, 1143, 1634
SchI	GAGTC	5 cut(s)	429, 601, 635, 809, 1132
ScrFI	CCNGG	3 cut(s)	1237, 1274, 1434
SduI	GDGCHC	2 cut(s)	604, 1997
SfaNI	GCATC	9 cut(s)	62, 202, 225, 581, 934, 1066, 1164, 1885, 2080
SfcI	CTRYAG	5 cut(s)	430, 1071, 1255, 2046, 2268
SinI	GGWCC	2 cut(s)	631, 1634
SmiMI	CAYNNNNRTG	2 cut(s)	230, 1513
SmlI	CTYRAG	4 cut(s)	308, 825, 1086, 2351
SmoI	CTYRAG	4 cut(s)	308, 825, 1086, 2351
Sse9I	AATT	4 cut(s)	63, 1046, 1351, 1526
SseBI	AGGCCT	1 cut(s)	1272
SspI	AATATT	1 cut(s)	1686
SspMI	CTAG	6 cut(s)	552, 996, 1448, 2036, 2333, 2342
StuI	AGGCCT	1 cut(s)	1272
StyD4I	CCNGG	3 cut(s)	1235, 1272, 1432
StyI	CCWWGG	2 cut(s)	634, 1668
TaaI	ACNGT	8 cut(s)	176, 207, 453, 862, 1259, 1368, 1744, 1999
TaiI	ACGT	2 cut(s)	1927, 2218
TaqI	TCGA	2 cut(s)	1840, 1927
TasI	AATT	4 cut(s)	63, 1046, 1351, 1526
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	4 cut(s)	187, 719, 836, 1581
Tru1I	TTAA	6 cut(s)	309, 1035, 1475, 1496, 2118, 2365
Tru9I	TTAA	6 cut(s)	309, 1035, 1475, 1496, 2118, 2365
TscAI	CASTG	9 cut(s)	91, 389, 631, 685, 1341, 1582, 1942, 2020, 2166
TseFI	GTSAC	4 cut(s)	538, 638, 753, 2081
TseI	GCWGC	3 cut(s)	1070, 1340, 2048
Tsp45I	GTSAC	4 cut(s)	538, 638, 753, 2081
TspGWI	ACGGA	1 cut(s)	1740
TspRI	CASTG	9 cut(s)	91, 389, 631, 685, 1341, 1582, 1942, 2020, 2166
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	631, 1634
XagI	CCTNNNNNAGG	1 cut(s)	1724
XceI	RCATGY	2 cut(s)	259, 470
XmiI	GTMKAC	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	1917, 2217
XspI	CTAG	6 cut(s)	552, 996, 1448, 2036, 2333, 2342
Zsp2I	ATGCAT	2 cut(s)	170, 1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.