gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00240 |
| fragaria_vesca | FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681 |
| malus_domestica | MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1 |
| pyrus_communis | pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210 |
| rosa_chinensis | RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081 |
| rosa_laevigata | RLG00000035859 |
| rosa_roxburghii | Rroxscaffold_4G00281750 |
| rosa_wichuraiana | Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 28 |
| AcsI | RAATTY | 1 cut(s) | 47 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| Alw21I | GWGCWC | 1 cut(s) | 190 |
| ApoI | RAATTY | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 137 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| Bbv12I | GWGCWC | 1 cut(s) | 190 |
| BccI | CCATC | 1 cut(s) | 134 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 1 cut(s) | 26 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| Bse1I | ACTGG | 1 cut(s) | 68 |
| BseGI | GGATG | 1 cut(s) | 142 |
| BseMII | CTCAG | 1 cut(s) | 73 |
| BseNI | ACTGG | 1 cut(s) | 68 |
| BsiHKAI | GWGCWC | 1 cut(s) | 190 |
| Bsp1286I | GDGCHC | 1 cut(s) | 190 |
| BspACI | CCGC | 1 cut(s) | 28 |
| BspCNI | CTCAG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 1 cut(s) | 26 |
| BsrI | ACTGG | 1 cut(s) | 68 |
| BstDEI | CTNAG | 1 cut(s) | 59 |
| BstEII | GGTNACC | 1 cut(s) | 143 |
| BstF5I | GGATG | 1 cut(s) | 142 |
| BstPI | GGTNACC | 1 cut(s) | 143 |
| BtsCI | GGATG | 1 cut(s) | 142 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| Cfr13I | GGNCC | 1 cut(s) | 25 |
| DdeI | CTNAG | 1 cut(s) | 59 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco91I | GGTNACC | 1 cut(s) | 143 |
| EcoO65I | GGTNACC | 1 cut(s) | 143 |
| EcoRI | GAATTC | 1 cut(s) | 47 |
| FaiI | YATR | 5 cut(s) | 80, 118, 120, 169, 171 |
| FokI | GGATG | 1 cut(s) | 149 |
| HphI | GGTGA | 1 cut(s) | 137 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 113 |
| Hpy188I | TCNGA | 1 cut(s) | 62 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 113 |
| HpyAV | CCTTC | 1 cut(s) | 171 |
| HpyF3I | CTNAG | 1 cut(s) | 59 |
| LpnPI | CCDG | 1 cut(s) | 81 |
| MaeIII | GTNAC | 2 cut(s) | 126, 143 |
| MhlI | GDGCHC | 1 cut(s) | 190 |
| MluCI | AATT | 1 cut(s) | 47 |
| MseI | TTAA | 1 cut(s) | 14 |
| NlaIV | GGNNCC | 1 cut(s) | 26 |
| NmuCI | GTSAC | 1 cut(s) | 143 |
| PspEI | GGTNACC | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 1 cut(s) | 26 |
| PspPI | GGNCC | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 14 |
| Sau96I | GGNCC | 1 cut(s) | 25 |
| SduI | GDGCHC | 1 cut(s) | 190 |
| SetI | ASST | 4 cut(s) | 97, 109, 128, 187 |
| SgeI | CNNG | 5 cut(s) | 55, 80, 108, 120, 145 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| Sse9I | AATT | 1 cut(s) | 47 |
| SsiI | CCGC | 1 cut(s) | 28 |
| TasI | AATT | 1 cut(s) | 47 |
| Tru1I | TTAA | 1 cut(s) | 14 |
| Tru9I | TTAA | 1 cut(s) | 14 |
| TscAI | CASTG | 1 cut(s) | 75 |
| TseFI | GTSAC | 1 cut(s) | 143 |
| Tsp45I | GTSAC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 2 cut(s) | 22, 74 |
| TspRI | CASTG | 1 cut(s) | 75 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 47 |