Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

33005372 .. 33005762

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTGACACTACCTCTGAATTGCAATGGCTTAAACATCTCCTCCAAGATCTTCAAGTTGACTTGGCTGCCATTCCAACTCTTCACTGTGACAATATCTTGGCCTTGGCTCTTGCTTTAAATCCTGTTCATCACTCCAAACTGAAACATATCGAGGTGGATGTTCACTTTACTCTGGACAAGGTTAAGGATGGCTCTATCAGATTGCAGTTTGTTTCTACTCATGACCAACTCGCTGACTTGTTCACTAAAGGACTCTGTTCTCCTCCACATACCTATCTCTGTCATCAGTTGCAGTTAGGTCCATCACCGCCTTCTCCCTCAGTTCAATTGATTCAGCTTGATGGCTTCTCCACCCATCCAGCTGAGGAGGGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

5.69

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	56, 329
AluBI	AGCT	2 cut(s)	340, 365
AluI	AGCT	2 cut(s)	340, 365
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	302
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	4 cut(s)	185, 313, 338, 366
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	3 cut(s)	166, 196, 358
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	336, 357
BseRI	GAGGAG	2 cut(s)	32, 255
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	335, 358
BspHI	TCATGA	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	322, 366
BstF5I	GGATG	3 cut(s)	166, 196, 358
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	166, 196, 358
BtsIMutI	CAGTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	9 cut(s)	5, 31, 68, 104, 110, 195, 340, 348, 365
CviKI_1	RGCY	9 cut(s)	5, 31, 68, 104, 110, 195, 340, 348, 365
DdeI	CTNAG	2 cut(s)	322, 366
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	150, 225, 273
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	3 cut(s)	173, 203, 345
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	255, 334
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	3 cut(s)	61, 166, 246
Hpy188I	TCNGA	2 cut(s)	19, 203
Hpy188III	TCNNGA	2 cut(s)	176, 224
Hpy8I	GTNNAC	3 cut(s)	61, 166, 246
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	25, 208, 295
HpyF3I	CTNAG	2 cut(s)	322, 366
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	138, 161, 375
Lsp1109I	GCAGC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	44, 74
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	2 cut(s)	20, 329
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	25, 53, 148, 276, 331, 361, 364
MseI	TTAA	3 cut(s)	33, 119, 186
MspA1I	CMGCKG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	329
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	33, 119, 186
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	249
SetI	ASST	7 cut(s)	17, 159, 186, 278, 304, 342, 367
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	20, 329
SsiI	CCGC	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	20, 329
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	33, 119, 186
Tru9I	TTAA	3 cut(s)	33, 119, 186
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.