RchiOBHm_Chr6g0253961

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001471
Physical Location & Seq
Forward (+)
9073466 .. 9075812
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22776

Sequence Viewer

Length: 1149 bp
ATGCTAGTGTTTTATCGAATTTTTATTTTTCTGTTATATGAAATTTCAGCTTCGGTTCAAGTCAGCGAAGGAAGTGAGATTGTGGCTGTTGTTTTCAAGTTTCCCAACCGTGAAGGCATACCTCGGGTTTATGTCATTATTGTCATAGCTCAGCATGGGTGCTGGACCCTGCTAAAAGGTGGCATAGTTGCAAATTTCACATCCCCAGTTGATATTGTTTTTGAGTTTATGCAAGCTCCAACTGAGGCTCATTATGCTGCTGTGAAAAGGATTCTGAGGTATCTCATTCGTACCACCAACCTTGGTCTTACTTATCGGTCTGCCTCTCTTGAGTTGCGGGCTTTTTCAGATGCCGATTGGGCAGGGGACCCAAATGATAGGAGGTCAACCACCGGATTTGTGATTTATTTTGGTAATTGTCCAATTTCATGGTGTTCTAAGAAGCAACATTCCGTTTCTCGGTCCTCAACTGAGGCCGAGTATCGCGCCATGGCTGATACAGCCTCTGAGATCTTTTGGCTTCGGCATTTACTGCAAGATATCGACATTCAGCTTCCTAATGTTCCCATTCTTCACTGTGATAACGTTTCTGCTCTCGCCTTGGCCTCCAATCCAGTCCATAAGTCCAAATGCAAGCATGTGGAAGTGGATGTGCATTTTACTAGAGAAAAGGTACTCCAAGGAGATTTAACATTACAGTTTGTGCCTTCCCTTGATCAATTCGCTGATATATTTACCAAGGGGCTTAGTACTGCTCAGTTTTCATACCTGTGCTGCAACCTAGTGCTTGGGCCTCCCAGCACTAGTTTGAGGGGGGATGTAGAGACTATAATACAAAATCAAGCAGATCAAGTTGTACAGGTCATTGAAGGTCAAAGAAGTTCTCAGACCTGTGAAAGTCACAATATCATCTGGGAAGATCCAAACATGCAGCCTCTCTGGCTTAAATCTCTTTCCTCCGAGGACATTGGAACAGCAGAAGAAAGGAGAATCAATTCAGTGATTCCTAGATATAAAGGGCAATTAATTGCTTGGTATGCAGTCAATGAGAATCTCCATTTCAGATTTTTCAAGATAAACTTGGCGAAAATGCTTCTGCATCATTCTTTTCCACTGCTCGACAGCTTGACCCTGACACTACTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

382

Amino Acids

43.25

Weight (kDa)

6.31

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 280 - 353 5.7e-06 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 486
AciI CCGC 1 cut(s) 337
AclI AACGTT 1 cut(s) 585
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 3 cut(s) 18, 42, 193
AfaI GTAC 4 cut(s) 292, 675, 751, 858
AfiI CCNNNNNNNGG 1 cut(s) 459
AgsI TTSAA 4 cut(s) 59, 97, 869, 1072
AhlI ACTAGT 1 cut(s) 803
AluBI AGCT 5 cut(s) 50, 149, 236, 553, 1125
AluI AGCT 5 cut(s) 50, 149, 236, 553, 1125
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 1 cut(s) 914
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 3 cut(s) 474, 603, 791
ApeKI GCWGC 3 cut(s) 257, 774, 931
ApoI RAATTY 3 cut(s) 18, 42, 193
AseI ATTAAT 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 994
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 4 cut(s) 165, 367, 462, 791
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 3 cut(s) 165, 367, 462
BbvI GCAGC 3 cut(s) 244, 761, 943
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 818
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 5 cut(s) 5, 663, 782, 804, 1008
BglI GCCNNNNNGGC 2 cut(s) 359, 940
BglII AGATCT 1 cut(s) 510
BisI GCNGC 3 cut(s) 258, 775, 932
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 259, 776, 933
BmcAI AGTACT 1 cut(s) 751
Bme18I GGWCC 3 cut(s) 165, 367, 462
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 165, 367, 462, 791
BmiI GGNNCC 3 cut(s) 167, 368, 369
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 340, 1108
BmuI ACTGGG 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 350
BsaJI CCNNGG 7 cut(s) 122, 301, 489, 600, 679, 738, 960
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse1I ACTGG 2 cut(s) 206, 614
BseDI CCNNGG 7 cut(s) 122, 301, 489, 600, 679, 738, 960
BseGI GGATG 3 cut(s) 200, 655, 823
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 7 cut(s) 164, 234, 266, 462, 498, 770, 899
BseNI ACTGG 2 cut(s) 206, 614
BseXI GCAGC 3 cut(s) 244, 761, 943
BseYI CCCAGC 1 cut(s) 797
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 3 cut(s) 476, 605, 793
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 818
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 3 cut(s) 476, 605, 793
BsoBI CYCGRG 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 4 cut(s) 510, 715, 847, 919
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 1 cut(s) 337
BspANI GGCC 3 cut(s) 476, 605, 793
BspCNI CTCAG 7 cut(s) 163, 235, 267, 463, 499, 769, 898
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 3 cut(s) 167, 368, 369
BspPI GGATC 1 cut(s) 914
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 2 cut(s) 206, 614
BssECI CCNNGG 7 cut(s) 122, 301, 489, 600, 679, 738, 960
BssMI GATC 4 cut(s) 510, 715, 847, 919
BssT1I CCWWGG 5 cut(s) 301, 489, 600, 679, 738
Bst4CI ACNGT 3 cut(s) 110, 578, 699
BstAPI GCANNNNNTGC 1 cut(s) 532
BstAUI TGTACA 1 cut(s) 856
BstC8I GCNNGC 3 cut(s) 234, 339, 635
BstDEI CTNAG 9 cut(s) 150, 243, 275, 438, 471, 507, 746, 756, 885
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 3 cut(s) 200, 655, 823
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 4 cut(s) 513, 718, 850, 922
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 4 cut(s) 510, 715, 847, 919
BstMWI GCNNNNNNNGC 6 cut(s) 254, 359, 500, 532, 940, 1037
BstNSI RCATGY 2 cut(s) 641, 931
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 244, 761, 943
BstX2I RGATCY 2 cut(s) 510, 919
BstXI CCANNNNNNTGG 1 cut(s) 429
BstYI RGATCY 2 cut(s) 510, 919
BsuRI GGCC 3 cut(s) 476, 605, 793
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 3 cut(s) 200, 655, 823
BtsI GCAGTG 1 cut(s) 1112
BtsIMutI CAGTG 3 cut(s) 574, 1005, 1112
Cac8I GCNNGC 3 cut(s) 234, 339, 635
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 1 cut(s) 488
Cfr13I GGNCC 4 cut(s) 165, 367, 462, 791
Csp6I GTAC 4 cut(s) 291, 674, 750, 857
CspCI CAANNNNNGTGG 4 cut(s) 283, 318, 379, 414
CviAII CATG 5 cut(s) 155, 429, 490, 638, 928
CviQI GTAC 4 cut(s) 291, 674, 750, 857
DdeI CTNAG 9 cut(s) 150, 243, 275, 438, 471, 507, 746, 756, 885
DpnI GATC 4 cut(s) 512, 717, 849, 921
DpnII GATC 4 cut(s) 510, 715, 847, 919
Eco130I CCWWGG 5 cut(s) 301, 489, 600, 679, 738
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 3 cut(s) 165, 367, 462
Eco88I CYCGRG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 367
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 5 cut(s) 301, 489, 600, 679, 738
ErhI CCWWGG 5 cut(s) 301, 489, 600, 679, 738
FaeI CATG 5 cut(s) 158, 432, 493, 641, 931
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 1 cut(s) 380
FatI CATG 5 cut(s) 154, 428, 489, 637, 927
FauI CCCGC 1 cut(s) 330
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 3 cut(s) 258, 775, 932
FokI GGATG 3 cut(s) 187, 662, 830
Fsp4HI GCNGC 3 cut(s) 258, 775, 932
FspBI CTAG 5 cut(s) 5, 663, 782, 804, 1008
GlaI GCGC 1 cut(s) 487
GluI GCNGC 3 cut(s) 258, 775, 932
GsaI CCCAGC 1 cut(s) 801
HaeIII GGCC 3 cut(s) 476, 605, 793
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 488
Hin1II CATG 5 cut(s) 158, 432, 493, 641, 931
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 4 cut(s) 271, 990, 1003, 1051
HpaII CCGG 1 cut(s) 393
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 6 cut(s) 276, 349, 508, 888, 961, 1064
Hpy188III TCNNGA 2 cut(s) 329, 1072
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 4 cut(s) 62, 107, 717, 863
HpyCH4III ACNGT 3 cut(s) 110, 578, 699
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 9 cut(s) 191, 232, 535, 633, 655, 777, 931, 1040, 1099
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 359, 500, 532, 940, 1037
HpyF3I CTNAG 9 cut(s) 150, 243, 275, 438, 471, 507, 746, 756, 885
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 5 cut(s) 158, 432, 493, 641, 931
HspAI GCGC 1 cut(s) 486
KflI GGGWCCC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 4 cut(s) 510, 715, 847, 919
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 3 cut(s) 244, 761, 943
LweI GCATC 2 cut(s) 340, 1108
MaeI CTAG 5 cut(s) 5, 663, 782, 804, 1008
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 1 cut(s) 899
MalI GATC 4 cut(s) 512, 717, 849, 921
MboI GATC 4 cut(s) 510, 715, 847, 919
MboII GAAGA 3 cut(s) 563, 929, 992
MflI RGATCY 2 cut(s) 510, 919
MluCI AATT 9 cut(s) 18, 42, 193, 415, 423, 719, 994, 1022, 1026
MmeI TCCRAC 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 994
MseI TTAA 3 cut(s) 689, 945, 1025
MslI CAYNNNNRTG 2 cut(s) 769, 1141
MspI CCGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 254, 359, 500, 532, 940, 1037
NcoI CCATGG 1 cut(s) 489
NdeII GATC 4 cut(s) 510, 715, 847, 919
NlaIII CATG 5 cut(s) 158, 432, 493, 641, 931
NlaIV GGNNCC 3 cut(s) 167, 368, 369
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 899
NspI RCATGY 2 cut(s) 641, 931
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 4 cut(s) 271, 990, 1003, 1051
PkrI GCNGC 3 cut(s) 259, 776, 933
PpuMI RGGWCCY 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 1025
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 797
PspN4I GGNNCC 3 cut(s) 167, 368, 369
PspPI GGNCC 4 cut(s) 165, 367, 462, 791
PspPPI RGGWCCY 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 510, 919
RsaI GTAC 4 cut(s) 292, 675, 751, 858
RsaNI GTAC 4 cut(s) 291, 674, 750, 857
RseI CAYNNNNRTG 2 cut(s) 769, 1141
SaqAI TTAA 3 cut(s) 689, 945, 1025
SatI GCNGC 3 cut(s) 258, 775, 932
Sau3AI GATC 4 cut(s) 510, 715, 847, 919
Sau96I GGNCC 4 cut(s) 165, 367, 462, 791
ScaI AGTACT 1 cut(s) 751
SfaNI GCATC 2 cut(s) 340, 1108
SinI GGWCC 3 cut(s) 165, 367, 462
SmiMI CAYNNNNRTG 2 cut(s) 769, 1141
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 9 cut(s) 18, 42, 193, 415, 423, 719, 994, 1022, 1026
SsiI CCGC 1 cut(s) 337
SspMI CTAG 5 cut(s) 5, 663, 782, 804, 1008
StyI CCWWGG 5 cut(s) 301, 489, 600, 679, 738
TaaI ACNGT 3 cut(s) 110, 578, 699
TaiI ACGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 16, 543, 1119
TaqII GACCGA 2 cut(s) 306, 450
TasI AATT 9 cut(s) 18, 42, 193, 415, 423, 719, 994, 1022, 1026
TatI WGTACW 2 cut(s) 749, 856
TfiI GAWTC 4 cut(s) 271, 990, 1003, 1051
Tru1I TTAA 3 cut(s) 689, 945, 1025
Tru9I TTAA 3 cut(s) 689, 945, 1025
TscAI CASTG 3 cut(s) 581, 1005, 1119
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 3 cut(s) 257, 774, 931
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 3 cut(s) 54, 417, 753
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 3 cut(s) 581, 1005, 1119
VpaK11BI GGWCC 3 cut(s) 165, 367, 462
VspI ATTAAT 1 cut(s) 1025
XapI RAATTY 3 cut(s) 18, 42, 193
XceI RCATGY 2 cut(s) 641, 931
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 5 cut(s) 5, 663, 782, 804, 1008
ZrmI AGTACT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.