Rw4G005820

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001471
Physical Location & Seq
Reverse (-)
11786510 .. 11787583
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005820.1

Sequence Viewer

Length: 789 bp
ATGAATGAGGAGATTGATGCTTTGAAAAGGCAAGGTACATGGGATCTTGTTCCTTTACCTGAAGGGAAAAATATTGTTGGGAGTAAGTGGATATACAAAATAAAGAAGAACCCTGATGGCAGTATATCAAGATTCAAAGCAAGATTAGTTGCGCAAGGTTTTAGTCAAGAAAAATGGCTTGACTATGATGAAACTTTTAGTCCAGTGGTCAGGCATAGCACTGTAAGAATCATACTTGCTCTTGCTGCTATGAACAACTGGGAATTAAAGCAACTTGATGTTAAAAATCCTTTCTTGCATGGTGATCTCAAAGAAGAAGTCTATATGCATCAACCACTAGGTTTCATTGACCCTGTCTATCCAAATCATGTTCAATACAAAAAGAATGGCCTTCTGTTATCTCAGGAGAAATATGCAAAGGATCTTATTGCCAAAGCTGGCTTAGAATCTTGCAGGGATTGCATCACTTCTTGTCTTCCTCATATGCAGCTACTTAAGGATGAAGGAACCCCTTTGTCTAATCCTACTCTCTATAGAAGTATTGTTGGTGCATTGCAGTATCTGACTTTTACTAGGCCTGATATTGCCTTTGCTGTGAATACAGTTTGCCAATTTATGTCTACACCTACAGATGTTCACTTTGCTTCTGTTAAAAGAATTTTGAGGTATCTGCAAGGTACATTGTGCAAGGGTTTGTTCTACAAGTTTGGACACAGTGTTCCTTATATCAATGCATATTGTGATGCAGACTGGGCTGGGGAAGTTAATCATAGGAGGTCTACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

262

Amino Acids

29.9

Weight (kDa)

8.77

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 13 - 122 1.2e-34 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 153
AccI GTMKAC 2 cut(s) 620, 779
AclWI GGATC 2 cut(s) 51, 429
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 37, 679
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 25, 136, 374
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 2 cut(s) 437, 490
AluI AGCT 2 cut(s) 437, 490
AlwI GGATC 2 cut(s) 51, 429
AlwNI CAGNNNCTG 1 cut(s) 562
AoxI GGCC 2 cut(s) 388, 575
ApeKI GCWGC 2 cut(s) 245, 487
ApoI RAATTY 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 232, 499
BccI CCATC 1 cut(s) 110
BfaI CTAG 2 cut(s) 338, 573
BfmI CTRYAG 2 cut(s) 532, 627
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 2 cut(s) 246, 488
BlsI GCNGC 2 cut(s) 247, 489
BmiI GGNNCC 1 cut(s) 508
BmrI ACTGGG 2 cut(s) 268, 760
BmsI GCATC 4 cut(s) 7, 337, 471, 733
BmuI ACTGGG 2 cut(s) 268, 760
BpiI GAAGAC 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 203, 263, 755
Bse3DI GCAATG 1 cut(s) 551
BseGI GGATG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 3 cut(s) 203, 263, 755
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 232, 499
BseYI CCCAGC 1 cut(s) 755
BshFI GGCC 2 cut(s) 390, 577
BsnI GGCC 2 cut(s) 390, 577
Bsp143I GATC 3 cut(s) 43, 304, 421
BspANI GGCC 2 cut(s) 390, 577
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 2 cut(s) 51, 429
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 3 cut(s) 203, 263, 755
BssMI GATC 3 cut(s) 43, 304, 421
Bst4CI ACNGT 3 cut(s) 223, 604, 716
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 402, 442
BstF5I GGATG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 3 cut(s) 46, 307, 424
BstMBI GATC 3 cut(s) 43, 304, 421
BstMWI GCNNNNNNNGC 3 cut(s) 245, 459, 752
BstSFI CTRYAG 2 cut(s) 532, 627
BstV1I GCAGC 2 cut(s) 232, 499
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 43, 421
BstYI RGATCY 2 cut(s) 43, 421
BsuRI GGCC 2 cut(s) 390, 577
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 3 cut(s) 210, 219, 721
Cac8I GCNNGC 1 cut(s) 439
CaiI CAGNNNCTG 1 cut(s) 562
CfoI GCGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 36, 678
CviAII CATG 4 cut(s) 39, 299, 368, 786
CviJI RGCY 7 cut(s) 178, 390, 437, 441, 490, 577, 755
CviKI_1 RGCY 7 cut(s) 178, 390, 437, 441, 490, 577, 755
CviQI GTAC 2 cut(s) 36, 678
DdeI CTNAG 2 cut(s) 402, 442
DpnI GATC 3 cut(s) 45, 306, 423
DpnII GATC 3 cut(s) 43, 304, 421
Eco147I AGGCCT 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 81
EcoT22I ATGCAT 2 cut(s) 330, 736
FaeI CATG 4 cut(s) 42, 302, 371, 789
FatI CATG 4 cut(s) 38, 298, 367, 785
FauNDI CATATG 1 cut(s) 483
FblI GTMKAC 2 cut(s) 620, 779
Fnu4HI GCNGC 2 cut(s) 246, 488
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 246, 488
FspBI CTAG 2 cut(s) 338, 573
FspI TGCGCA 1 cut(s) 153
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 246, 488
GsaI CCCAGC 1 cut(s) 759
HaeIII GGCC 2 cut(s) 390, 577
HhaI GCGC 1 cut(s) 154
Hin1II CATG 4 cut(s) 42, 302, 371, 789
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 3 cut(s) 132, 228, 446
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 3 cut(s) 621, 637, 780
Hpy188I TCNGA 1 cut(s) 564
Hpy188III TCNNGA 3 cut(s) 129, 167, 404
Hpy8I GTNNAC 3 cut(s) 621, 637, 780
HpyAV CCTTC 3 cut(s) 56, 401, 497
HpyCH4III ACNGT 3 cut(s) 223, 604, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 459, 752
HpyF3I CTNAG 2 cut(s) 402, 442
Hsp92II CATG 4 cut(s) 42, 302, 371, 789
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 43, 304, 421
Lsp1109I GCAGC 2 cut(s) 232, 499
LweI GCATC 4 cut(s) 7, 337, 471, 733
MaeI CTAG 2 cut(s) 338, 573
MalI GATC 3 cut(s) 45, 306, 423
MboI GATC 3 cut(s) 43, 304, 421
MboII GAAGA 3 cut(s) 118, 326, 467
MflI RGATCY 2 cut(s) 43, 421
MluCI AATT 3 cut(s) 263, 611, 657
MnlI CCTC 3 cut(s) 489, 657, 768
Mph1103I ATGCAT 2 cut(s) 330, 736
MseI TTAA 5 cut(s) 266, 282, 495, 651, 765
MspCI CTTAAG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 245, 459, 752
NdeI CATATG 1 cut(s) 483
NdeII GATC 3 cut(s) 43, 304, 421
NlaIII CATG 4 cut(s) 42, 302, 371, 789
NlaIV GGNNCC 1 cut(s) 508
NsbI TGCGCA 1 cut(s) 153
NsiI ATGCAT 2 cut(s) 330, 736
PceI AGGCCT 1 cut(s) 577
PfeI GAWTC 3 cut(s) 132, 228, 446
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 247, 489
PspFI CCCAGC 1 cut(s) 755
PspN4I GGNNCC 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 562
PsuI RGATCY 2 cut(s) 43, 421
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 2 cut(s) 37, 679
RsaNI GTAC 2 cut(s) 36, 678
SaqAI TTAA 5 cut(s) 266, 282, 495, 651, 765
SatI GCNGC 2 cut(s) 246, 488
Sau3AI GATC 3 cut(s) 43, 304, 421
SfaNI GCATC 4 cut(s) 7, 337, 471, 733
SfcI CTRYAG 2 cut(s) 532, 627
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 3 cut(s) 263, 611, 657
SseBI AGGCCT 1 cut(s) 577
SspI AATATT 1 cut(s) 73
SspMI CTAG 2 cut(s) 338, 573
StuI AGGCCT 1 cut(s) 577
TaaI ACNGT 3 cut(s) 223, 604, 716
TasI AATT 3 cut(s) 263, 611, 657
TfiI GAWTC 3 cut(s) 132, 228, 446
Tru1I TTAA 5 cut(s) 266, 282, 495, 651, 765
Tru9I TTAA 5 cut(s) 266, 282, 495, 651, 765
TscAI CASTG 3 cut(s) 210, 226, 721
TseI GCWGC 2 cut(s) 245, 487
TspDTI ATGAA 5 cut(s) 17, 204, 266, 334, 516
TspRI CASTG 3 cut(s) 210, 226, 721
Tth111I GACNNNGTC 1 cut(s) 353
Vha464I CTTAAG 1 cut(s) 494
XapI RAATTY 1 cut(s) 657
XmiI GTMKAC 2 cut(s) 620, 779
XspI CTAG 2 cut(s) 338, 573
Zsp2I ATGCAT 2 cut(s) 330, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.