RchiOBHm_Chr1g0313691
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001471
Physical Location & Seq
Forward (+)
779127 .. 781185
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54450

Sequence Viewer

Length: 726 bp
ATGTTGAAAGATGAAGGTATACCATTGGCAAACCCTACGCTCTATAGAAGCATTGTTGGAGCCCTTCAGTATCTTACCTTTACAAGGCCAGATATAGCCTATGCAGTAAACACAGTTTGCCAGTTCATGACTGCTCCTACTGATATTCACTATGCTGCTGTGAAAAGGATACTGAGATATCTGCAAGGAACAATAAAGAATGGTCTTTTCTACAAGTATGGCTCATCTCCAACATATATTACTGCTTATTGTGATGCTGATTGGGCTGGAGAAATAAATCAAAGAAGGTCTACCACAGGTTTCATTGTCTACTTGGGATATTGTCCTATTTCATGGCAGTCTAAGAAGCAGGGATCTGTCTCAAGGAGTTCTACAGAAGCTGAATATAGATCCCTTGCCAATACTGCAGCTGACATATCTTGGATTAGACACATTCTTTGTGATCTTCATGTTCGTGTTCCAGCTCCTCCACTACTCAAATGTGATAATTTGTCTGCTATAGCCTTGTGCTCAAATCTAGTGTTTCATTCAAGGATTAAACACCTGGATAATGACTTTCATTTTGTCAGAGAGCGTGTTCAAAGACGTGATCTTATGCTACAATATGTTCCTACTTCACACCAGACTGCAGATATCTTCACAAAAGGGCTACACAGTCCAGTATTCAAGGAGCATTGCACCAATCTCAGTGTGTTCTCCCCCACTGAGATTGAGGGGAGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

241

Amino Acids

27.35

Weight (kDa)

8.87

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 19, 290, 309
AclWI GGATC 2 cut(s) 361, 384
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 4 cut(s) 7, 531, 581, 667
AjiI CACGTC 1 cut(s) 587
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 3 cut(s) 380, 410, 464
AluI AGCT 3 cut(s) 380, 410, 464
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 2 cut(s) 361, 384
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 155, 407
ArsI GACNNNNNNTTYG 4 cut(s) 420, 452, 545, 577
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 2 cut(s) 142, 419
BciT130I CCWGG 1 cut(s) 545
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 5 cut(s) 43, 372, 405, 498, 627
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 2 cut(s) 156, 408
BlsI GCNGC 2 cut(s) 157, 409
Bme1390I CCNGG 1 cut(s) 545
BmgBI CACGTC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 121, 659
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 545
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 3 cut(s) 164, 696, 700
BseNI ACTGG 2 cut(s) 121, 659
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 142, 419
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 364
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 64, 512
Bsp143I GATC 4 cut(s) 353, 389, 442, 589
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 3 cut(s) 165, 697, 699
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 2 cut(s) 409, 631
BspPI GGATC 2 cut(s) 361, 384
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 2 cut(s) 121, 659
BssMI GATC 4 cut(s) 353, 389, 442, 589
BssNAI GTATAC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 115, 656
BstDEI CTNAG 4 cut(s) 173, 342, 686, 705
BstENI CCTNNNNNAGG 1 cut(s) 82
BstKTI GATC 4 cut(s) 356, 392, 445, 592
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 4 cut(s) 353, 389, 442, 589
BstMWI GCNNNNNNNGC 2 cut(s) 263, 404
BstNI CCWGG 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 5 cut(s) 43, 372, 405, 498, 627
BstV1I GCAGC 2 cut(s) 142, 419
BstX2I RGATCY 2 cut(s) 353, 389
BstYI RGATCY 2 cut(s) 353, 389
BstZ17I GTATAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 587
BtsIMutI CAGTG 2 cut(s) 694, 702
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 3 cut(s) 127, 333, 449
DdeI CTNAG 4 cut(s) 173, 342, 686, 705
DpnI GATC 4 cut(s) 355, 391, 444, 591
DpnII GATC 4 cut(s) 353, 389, 442, 589
Eco24I GRGCYC 1 cut(s) 64
Eco32I GATATC 2 cut(s) 179, 634
Eco57I CTGAAG 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 543
EcoRV GATATC 2 cut(s) 179, 634
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 3 cut(s) 130, 336, 452
FatI CATG 3 cut(s) 126, 332, 448
FblI GTMKAC 3 cut(s) 19, 290, 309
Fnu4HI GCNGC 2 cut(s) 156, 408
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 156, 408
FspBI CTAG 1 cut(s) 518
GluI GCNGC 2 cut(s) 156, 408
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 3 cut(s) 130, 336, 452
Hpy166II GTNNAC 4 cut(s) 20, 109, 291, 310
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 4 cut(s) 20, 109, 291, 310
HpyAV CCTTC 3 cut(s) 8, 74, 279
HpyCH4III ACNGT 2 cut(s) 115, 656
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 104, 184, 407, 629, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 404
HpyF3I CTNAG 4 cut(s) 173, 342, 686, 705
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 3 cut(s) 130, 336, 452
Kzo9I GATC 4 cut(s) 353, 389, 442, 589
LmnI GCTCC 4 cut(s) 59, 139, 469, 670
Lsp1109I GCAGC 2 cut(s) 142, 419
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 518
MaeII ACGT 1 cut(s) 586
MalI GATC 4 cut(s) 355, 391, 444, 591
MboI GATC 4 cut(s) 353, 389, 442, 589
MboII GAAGA 2 cut(s) 437, 628
MflI RGATCY 2 cut(s) 353, 389
MhlI GDGCHC 2 cut(s) 64, 512
MluCI AATT 1 cut(s) 487
MmeI TCCRAC 2 cut(s) 37, 254
MnlI CCTC 3 cut(s) 477, 706, 711
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 2 cut(s) 263, 404
NdeII GATC 4 cut(s) 353, 389, 442, 589
NlaIII CATG 3 cut(s) 130, 336, 452
NlaIV GGNNCC 1 cut(s) 61
PagI TCATGA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 157, 409
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 61
PstI CTGCAG 2 cut(s) 409, 631
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 353, 389
PvuII CAGCTG 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 2 cut(s) 156, 408
Sau3AI GATC 4 cut(s) 353, 389, 442, 589
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 2 cut(s) 64, 512
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 5 cut(s) 43, 372, 405, 498, 627
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 543
TaaI ACNGT 2 cut(s) 115, 656
TaiI ACGT 1 cut(s) 589
TasI AATT 1 cut(s) 487
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 694, 709
TseI GCWGC 2 cut(s) 155, 407
TspDTI ATGAA 7 cut(s) 27, 115, 292, 321, 437, 515, 548
TspRI CASTG 2 cut(s) 694, 709
XagI CCTNNNNNAGG 1 cut(s) 82
XmiI GTMKAC 3 cut(s) 19, 290, 309
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.