Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

76929668 .. 76930408

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGCAAGGAACTAGTTACATCCGAGAGTACACATTTCAGGAGTCTTGTGGGATGCCTTCAGTACCTAACATTCACCAGGCCAGACATTGCCTATGGTGTCAACTCTGTGTGTCAGTTCATGCAACATCCCTCAGAAGATCATCTTATTGCTGCAAAGCGAATCCTACGTTATGTGAAGGGAACTCTTGAGTTTGGCATTTGTTTCAGGAGGGGTAATCTCTCCACCGCACCTAGCTCTCAGCTTCTACACCTGCAAGCATTCTGTGATGCTGATTGGGCTGGGGATCCCAATGATAGGAAATCCACCACAGGCTTTGTTATTCTTCTCGATCAATCACCTGTGTCTTGGTGTAGTAAGAAGCAGTCATCAGTGTCTCGATCCTCCACTGAAGCTGAATATAGGAGCATGGCAGACACTACTTCGGAACTAATGTGGCTTTCTCATCTGCTTCATGATTTGCATATTCATCTCAGTTGCATTCCCACTCTACATTGTGACAATATTTCTGCTCTTGCTCTTGCCACCAATCCTGTCTATCATTCCAAACTGAAGCACATTGAGGTGGATGTCCACTTCACTCGAGATCAAGTCAAGGCCGGCACAATCAAGCTACAATTTGTCAGCTCCAAAGACCAACTTGCTGACCTGTTCACCAAAGGCTTAGGCGCGTCTCAACATCAATATCTTTGTGACAGCTTGAAGCTAATGACTCACCTTCAAGCTGAGGAGGGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

6.69

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	261
AccII	CGCG	1 cut(s)	671
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	3 cut(s)	281, 294, 375
AcuI	CTGAAG	3 cut(s)	44, 411, 572
AfaI	GTAC	2 cut(s)	31, 65
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	703, 722
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	8 cut(s)	237, 244, 395, 613, 627, 699, 706, 725
AluI	AGCT	8 cut(s)	237, 244, 395, 613, 627, 699, 706, 725
Alw26I	GTCTC	2 cut(s)	381, 678
AlwI	GGATC	3 cut(s)	281, 294, 375
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	2 cut(s)	80, 597
ApeKI	GCWGC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	671
AsuHPI	GGTGA	4 cut(s)	67, 330, 646, 707
AvaI	CYCGRG	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	381, 678
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	2 cut(s)	14, 234
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	582
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	44, 259
Bpu10I	CCTNAGC	2 cut(s)	664, 726
BpuEI	CTTGAG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	79
BseGI	GGATG	4 cut(s)	20, 59, 127, 574
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	4 cut(s)	147, 254, 487, 717
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	671
BshFI	GGCC	2 cut(s)	82, 599
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	381, 678
BsmBI	CGTCTC	1 cut(s)	678
BsmI	GAATGC	2 cut(s)	260, 480
BsnI	GGCC	2 cut(s)	82, 599
BsoBI	CYCGRG	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	139, 286, 331, 380, 586
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	82, 599
BspCNI	CTCAG	4 cut(s)	146, 253, 486, 718
BspFNI	CGCG	1 cut(s)	671
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	281, 294, 375
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	599
BssMI	GATC	5 cut(s)	139, 286, 331, 380, 586
Bst2UI	CCWGG	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	258, 601
BstDEI	CTNAG	5 cut(s)	133, 240, 473, 664, 726
BstF5I	GGATG	4 cut(s)	20, 59, 127, 574
BstFNI	CGCG	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	5 cut(s)	142, 289, 334, 383, 589
BstMAI	GTCTC	2 cut(s)	381, 678
BstMBI	GATC	5 cut(s)	139, 286, 331, 380, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstUI	CGCG	1 cut(s)	671
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	82, 599
BtsCI	GGATG	4 cut(s)	20, 59, 127, 574
BtsIMutI	CAGTG	2 cut(s)	378, 387
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	258, 601
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	1 cut(s)	599
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	30, 64
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	3 cut(s)	121, 409, 455
CviQI	GTAC	2 cut(s)	30, 64
DdeI	CTNAG	5 cut(s)	133, 240, 473, 664, 726
DpnI	GATC	5 cut(s)	141, 288, 333, 382, 588
DpnII	GATC	5 cut(s)	139, 286, 331, 380, 586
Eco57I	CTGAAG	3 cut(s)	44, 411, 572
Eco88I	CYCGRG	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	3 cut(s)	124, 412, 458
FaiI	YATR	7 cut(s)	96, 122, 174, 402, 410, 456, 465
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 624, 656
FatI	CATG	3 cut(s)	120, 408, 454
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	4 cut(s)	7, 66, 114, 581
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	14, 234
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	82, 599
HapII	CCGG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	124, 412, 458
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	3 cut(s)	43, 162, 712
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	4 cut(s)	67, 330, 646, 707
Hpy166II	GTNNAC	4 cut(s)	32, 103, 574, 654
Hpy188I	TCNGA	3 cut(s)	25, 136, 427
Hpy188III	TCNNGA	7 cut(s)	40, 188, 208, 329, 378, 455, 584
Hpy8I	GTNNAC	4 cut(s)	32, 103, 574, 654
HpyAV	CCTTC	3 cut(s)	68, 172, 728
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	5 cut(s)	124, 155, 256, 463, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	5 cut(s)	133, 240, 473, 664, 726
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	3 cut(s)	124, 412, 458
HspAI	GCGC	1 cut(s)	669
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	139, 286, 331, 380, 586
LmnI	GCTCC	2 cut(s)	405, 632
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	44, 259
MaeI	CTAG	2 cut(s)	14, 234
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	3 cut(s)	16, 497, 692
MalI	GATC	5 cut(s)	141, 288, 333, 382, 588
MboI	GATC	5 cut(s)	139, 286, 331, 380, 586
MboII	GAAGA	2 cut(s)	149, 317
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	1 cut(s)	617
MlyI	GAGTC	2 cut(s)	52, 706
MnlI	CCTC	6 cut(s)	142, 204, 394, 556, 721, 724
MroNI	GCCGGC	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	563
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	260, 480
MvaI	CCWGG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	1 cut(s)	278
NaeI	GCCGGC	1 cut(s)	601
NdeII	GATC	5 cut(s)	139, 286, 331, 380, 586
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	124, 412, 458
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	497, 692
PaeR7I	CTCGAG	1 cut(s)	582
PagI	TCATGA	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	261
PctI	GAATGC	2 cut(s)	260, 480
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	51, 706
PpsI	GAGTC	2 cut(s)	51, 706
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	31, 65
RsaNI	GTAC	2 cut(s)	30, 64
RseI	CAYNNNNRTG	1 cut(s)	563
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	5 cut(s)	139, 286, 331, 380, 586
SchI	GAGTC	2 cut(s)	52, 706
ScrFI	CCNGG	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	44, 259
Sfr274I	CTCGAG	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	188, 582
SmoI	CTYRAG	2 cut(s)	188, 582
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	1 cut(s)	617
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	14, 234
StyD4I	CCNGG	1 cut(s)	77
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	330, 379, 583
TasI	AATT	1 cut(s)	617
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	162
TscAI	CASTG	2 cut(s)	378, 394
TseFI	GTSAC	2 cut(s)	497, 692
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	497, 692
TspDTI	ATGAA	3 cut(s)	109, 443, 458
TspRI	CASTG	2 cut(s)	378, 394
XhoI	CTCGAG	1 cut(s)	582
XspI	CTAG	2 cut(s)	14, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.