Rw7G023080

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001471
Physical Location & Seq
Forward (+)
27633850 .. 27634824
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023080.1

Sequence Viewer

Length: 816 bp
ATGATAGCCTTGCTTCTATACGTGGATGACATTGTGATTACAGGTTCTGATAGAGTTGGTATTTCAACTGTGGTTCATGAACTTGGTGAAGTCTTTGATATGAAAGATCTTGGTCCCTTATCTTATTTTTTAGGCATTGAAGTTCAGTACAAGAAGAATGGTGTTCTTCTTTCACAAGAAAAATATGCAAAAGATCTTATTGCCAAGGCTGGTTTAGAGTCATGCATGGATTGCATTACACCTTGTCTTCCTCATAATCAATTGCTTCGTAATGAAGGGACTCCTTTATCCAATCCAACTCTACACATAAGTCTTGTAGGTGCATTACAATATCTTACTTTCACTAGACCAGATATTGCTTTTGCTGTGAATACAATTAATCACAGAAGGTCTATTGTGTATTTAGGACATTGTCCTGTCTCATGGCAGTCTAAAAAGCAGGGCTCTGTGTCAAGAAGTTCAACTGAGGCTGAGTATAGAGCTCTTGCTAACACTGCTGCAGAAATCTCCTGGATGAGACATATTCTTTGTGACTTGTGTATTAAGATTCCTGCTCCACCTCTGCTAAAGTGTGATAATCTCTCTGCTCTTGCACTTTGCTCTAATCCTGTTTTTCATTCTAGGATCAAGCGTCTTGACAATGACTTCCATTTCGTCAGAGAAAGAGTGCAAAGACAAGACTTGCTTTTACAATATGTGCCCACTGCTCAACAAACTGCCGATGTATTCACCAAGGGTCTACACAGTCCTATCTTCAAAGAACATTGTTCCAATCTTAGTGTGCTAGCCCCTACTGAGATTGAGGGGAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

271

Amino Acids

30.26

Weight (kDa)

7.12

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 4 - 83 3.2e-17 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 739
AclWI GGATC 1 cut(s) 632
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 4 cut(s) 66, 140, 462, 757
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 1 cut(s) 482
AluI AGCT 1 cut(s) 482
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 424, 511
AlwI GGATC 1 cut(s) 632
AlwNI CAGNNNCTG 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 497
ArsI GACNNNNNNTTYG 4 cut(s) 510, 542, 635, 667
AseI ATTAAT 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 98, 721
AsuNHI GCTAGC 1 cut(s) 784
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 702
BanII GRGCYC 2 cut(s) 446, 484
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 424, 511
BfaI CTAG 3 cut(s) 345, 621, 785
BfmI CTRYAG 1 cut(s) 498
BglII AGATCT 2 cut(s) 106, 193
BisI GCNGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 511
BmtI GCTAGC 1 cut(s) 788
BpiI GAAGAC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 204, 732
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 204, 732
BseGI GGATG 2 cut(s) 31, 519
BseMII CTCAG 3 cut(s) 456, 462, 786
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 484
BslFI GGGAC 2 cut(s) 99, 292
BsmAI GTCTC 2 cut(s) 424, 511
BsmFI GGGAC 2 cut(s) 99, 292
Bsp1286I GDGCHC 3 cut(s) 446, 484, 702
Bsp143I GATC 3 cut(s) 106, 193, 624
BspCNI CTCAG 3 cut(s) 457, 463, 787
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 502
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 204, 732
BssMI GATC 3 cut(s) 106, 193, 624
BssT1I CCWWGG 2 cut(s) 204, 732
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 70, 746
BstAPI GCANNNNNTGC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 4 cut(s) 465, 471, 776, 795
BstF5I GGATG 2 cut(s) 31, 519
BstKTI GATC 3 cut(s) 109, 196, 627
BstMAI GTCTC 2 cut(s) 424, 511
BstMBI GATC 3 cut(s) 106, 193, 624
BstMWI GCNNNNNNNGC 2 cut(s) 231, 494
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 106, 193
BstYI RGATCY 2 cut(s) 106, 193
BtsCI GGATG 2 cut(s) 31, 519
BtsI GCAGTG 2 cut(s) 492, 702
BtsIMutI CAGTG 2 cut(s) 492, 702
Cac8I GCNNGC 1 cut(s) 786
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 620
Csp6I GTAC 1 cut(s) 148
CviAII CATG 4 cut(s) 77, 222, 226, 423
CviJI RGCY 6 cut(s) 8, 209, 444, 470, 482, 788
CviKI_1 RGCY 6 cut(s) 8, 209, 444, 470, 482, 788
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 465, 471, 776, 795
DpnI GATC 3 cut(s) 108, 195, 626
DpnII GATC 3 cut(s) 106, 193, 624
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 204, 732
Eco24I GRGCYC 2 cut(s) 446, 484
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 204, 732
EcoT22I ATGCAT 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 446, 484
ErhI CCWWGG 2 cut(s) 204, 732
FaeI CATG 4 cut(s) 80, 225, 229, 426
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FaqI GGGAC 2 cut(s) 99, 292
FatI CATG 4 cut(s) 76, 221, 225, 422
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 38, 526
FriOI GRGCYC 2 cut(s) 446, 484
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 3 cut(s) 345, 621, 785
GluI GCNGC 1 cut(s) 498
HgaI GACGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 80, 225, 229, 426
HinfI GANTC 3 cut(s) 218, 280, 547
HphI GGTGA 2 cut(s) 98, 721
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 2 cut(s) 49, 659
Hpy188III TCNNGA 3 cut(s) 77, 453, 635
Hpy8I GTNNAC 1 cut(s) 740
HpyAV CCTTC 2 cut(s) 269, 381
HpyCH4III ACNGT 2 cut(s) 70, 746
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 7 cut(s) 188, 225, 234, 323, 500, 593, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 494
HpyF3I CTNAG 4 cut(s) 465, 471, 776, 795
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 4 cut(s) 80, 225, 229, 426
Kzo9I GATC 3 cut(s) 106, 193, 624
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 9 cut(s) 27, 195, 363, 425, 429, 496, 523, 564, 621
Lsp1109I GCAGC 1 cut(s) 484
MaeI CTAG 3 cut(s) 345, 621, 785
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 108, 195, 626
MboI GATC 3 cut(s) 106, 193, 624
MboII GAAGA 4 cut(s) 158, 166, 239, 745
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 2 cut(s) 106, 193
MhlI GDGCHC 3 cut(s) 446, 484, 702
MluCI AATT 2 cut(s) 260, 375
MlyI GAGTC 2 cut(s) 227, 274
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 5 cut(s) 261, 460, 570, 796, 801
Mph1103I ATGCAT 1 cut(s) 227
MseI TTAA 3 cut(s) 378, 543, 814
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 2 cut(s) 231, 494
NdeII GATC 3 cut(s) 106, 193, 624
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 4 cut(s) 80, 225, 229, 426
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 530
NsiI ATGCAT 1 cut(s) 227
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 1 cut(s) 547
PflFI GACNNNGTC 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 509
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 2 cut(s) 226, 274
PpsI GAGTC 2 cut(s) 226, 274
Ppu21I YACGTR 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 106, 193
PsyI GACNNNGTC 1 cut(s) 411
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 3 cut(s) 378, 543, 814
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 106, 193, 624
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 227, 274
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 3 cut(s) 446, 484, 702
SetI ASST 8 cut(s) 24, 46, 244, 322, 392, 484, 562, 812
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 260, 375
SspMI CTAG 3 cut(s) 345, 621, 785
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 509
StyI CCWWGG 2 cut(s) 204, 732
TaaI ACNGT 2 cut(s) 70, 746
TaiI ACGT 1 cut(s) 24
TasI AATT 2 cut(s) 260, 375
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 378, 543, 814
Tru9I TTAA 3 cut(s) 378, 543, 814
TscAI CASTG 2 cut(s) 499, 709
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 5 cut(s) 65, 93, 116, 288, 605
TspRI CASTG 2 cut(s) 499, 709
Tth111I GACNNNGTC 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 739
XspI CTAG 3 cut(s) 345, 621, 785
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.