RchiOBHm_Chr2g0155191
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001471
Physical Location & Seq
Forward (+)
72170739 .. 72171062
324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52409

Sequence Viewer

Length: 279 bp
ATGTGTGATTTACATGCTTTTATTCCATCTCCTCCACTGATCCATTGTGATAACATGTCTTCCATTGCCTTGGGATCTAATGCTGTTTTTCATTCAAAAATCAAAAGCCTGGAAACTGATTATCACTTTGTTAGAGAAAGGGTTCAGAAAGGTGGACTTGAGTTACGATACATCCCAACCAAGGAACAAACTGCAGATATTATGACAAAGGGACTTCATGGTCCTCAGTTCAACTCTCACTTTGGCAAACTCAGACTGGGAAAACCCAGCTGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

92

Amino Acids

10.29

Weight (kDa)

8.91

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 219
AclWI GGATC 2 cut(s) 34, 82
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 2 cut(s) 96, 232
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
AlwI GGATC 2 cut(s) 34, 82
ApeKI GCWGC 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 69, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 69, 180
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 239, 265
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 266
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 39, 74
BspCNI CTCAG 2 cut(s) 238, 264
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 34, 82
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 69, 180
BssMI GATC 2 cut(s) 39, 74
BssT1I CCWWGG 2 cut(s) 69, 180
Bst2UI CCWGG 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 225, 251
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 42, 77
BstMBI GATC 2 cut(s) 39, 74
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 17, 58
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 221
CviAII CATG 3 cut(s) 14, 55, 218
CviJI RGCY 2 cut(s) 108, 270
CviKI_1 RGCY 2 cut(s) 108, 270
DdeI CTNAG 2 cut(s) 225, 251
DpnI GATC 2 cut(s) 41, 76
DpnII GATC 2 cut(s) 39, 74
DrdI GACNNNNNNGTC 1 cut(s) 219
DseDI GACNNNNNNGTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 69, 180
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 69, 180
ErhI CCWWGG 2 cut(s) 69, 180
FaeI CATG 3 cut(s) 17, 58, 221
FaiI YATR 4 cut(s) 15, 56, 203, 219
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 225
FatI CATG 3 cut(s) 13, 54, 217
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 271
GsaI CCCAGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 17, 58, 221
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 147, 254
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 225, 251
Hsp92II CATG 3 cut(s) 17, 58, 221
Kzo9I GATC 2 cut(s) 39, 74
LpnPI CCDG 3 cut(s) 95, 122, 242
Lsp1109I GCAGC 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 162
MalI GATC 2 cut(s) 41, 76
MboI GATC 2 cut(s) 39, 74
MboII GAAGA 1 cut(s) 51
MflI RGATCY 1 cut(s) 74
MnlI CCTC 2 cut(s) 42, 234
MroXI GAANNNNTTC 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
NdeII GATC 2 cut(s) 39, 74
NlaIII CATG 3 cut(s) 17, 58, 221
NspI RCATGY 2 cut(s) 17, 58
PciI ACATGT 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 272
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 270
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 39, 74
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 110
SetI ASST 2 cut(s) 154, 272
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 9 cut(s) 26, 67, 82, 121, 122, 170, 193, 230, 269
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 69, 180
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 80, 206
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 221
XceI RCATGY 2 cut(s) 17, 58
XmnI GAANNNNTTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.