Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Reverse (-)

21715552 .. 21716450

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGGACTTAGGTAAGCTTCATTTCTTCTTGGGACTTGAGATTCAATACCTGCCACATGGTCTATTTTTTTCTCAGAAGAAATATGCCAAGGATCTTCTTCATAAGTCTGGTTTGGATGATTGTCACATTCACACTACTTCTTGTAAGTCTGGCCTCAAGCTTCTCAAGGACACTGGTGTTCCTTTGCAGCCTCATGAGATCACTCAATTCAGAAGTATGGTTGGCTGCCTTCAATACCTTACCTGTACAAGGCCTGATATCACTTATGCTGTAAACTCTGTGTGCCAATTCTTGCACAATCTTACAGACTTACATCTTTATGCTGCTAAGAGGATACTAAGATATGTTAAGGGTACACTTCGTCAAGGCATCTATTTCAGGAGGAGTGATAATCCTCTTTCTGGTGATTCTGCCCTTCATCTTCAGGCTGACTGTGATGCAGATTGGGTAGGTGACCCTAATGATAGAAAATCTACTACTGCCTTTGCTGTTTTAAACAAACTGCTGTCTCTCGATCGTCCACTGAGGCTGAGTATAGGAGCATGGCTAACACCACTTCTGAAATCATGTGGCTGCTTCATTTACTTCATGATCTGCATATATCTCTTGCTGATGTTCCATTCTTACACTAAATCAGGTCAAGGCTGGATCCCTCAAACTCCAATTTGTCACATCCAAGGACCAACTTGCAGATCTGTTCACCAAGGGCCTTTGCTCACCTCAGCATACTTATCTCTGCAACTGCTTGATGTTGCATACCTCCCATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

258

Amino Acids

29.12

Weight (kDa)

8.92

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	102, 646, 659
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	250, 358
AfiI	CCNNNNNNNGG	2 cut(s)	252, 404
AgsI	TTSAA	2 cut(s)	47, 236
AluBI	AGCT	2 cut(s)	19, 163
AluI	AGCT	2 cut(s)	19, 163
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	3 cut(s)	102, 646, 659
AoxI	GGCC	3 cut(s)	154, 254, 710
ApeKI	GCWGC	4 cut(s)	190, 228, 326, 576
AspS9I	GGNCC	2 cut(s)	683, 710
AsuHPI	GGTGA	4 cut(s)	419, 467, 695, 712
AvaII	GGWCC	1 cut(s)	683
BamHI	GGATCC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	724
BbvI	GCAGC	4 cut(s)	202, 215, 313, 563
BccI	CCATC	1 cut(s)	775
BciVI	GTATCC	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	4 cut(s)	191, 229, 327, 577
BlsI	GCNGC	4 cut(s)	192, 230, 328, 578
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	683, 710
BmiI	GGNNCC	1 cut(s)	653
BmsI	GCATC	2 cut(s)	381, 430
Bpu10I	CCTNAGC	1 cut(s)	724
BpuEI	CTTGAG	3 cut(s)	59, 143, 152
BsaJI	CCNNGG	3 cut(s)	90, 679, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 404
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	3 cut(s)	90, 679, 706
BseGI	GGATG	2 cut(s)	124, 675
BseLI	CCNNNNNNNGG	2 cut(s)	252, 404
BseMII	CTCAG	4 cut(s)	89, 518, 524, 738
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	202, 215, 313, 563
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	156, 256, 712
BsiEI	CGRYCG	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	252, 404
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	156, 256, 712
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
BspANI	GGCC	3 cut(s)	156, 256, 712
BspCNI	CTCAG	4 cut(s)	88, 519, 525, 737
BspHI	TCATGA	2 cut(s)	196, 591
BspLI	GGNNCC	1 cut(s)	653
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	3 cut(s)	102, 646, 659
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	90, 679, 706
BssMI	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
BssT1I	CCWWGG	3 cut(s)	90, 679, 706
Bst4CI	ACNGT	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	248
BstDEI	CTNAG	7 cut(s)	10, 75, 330, 341, 527, 533, 724
BstEII	GGTNACC	1 cut(s)	455
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	124, 675
BstKTI	GATC	6 cut(s)	97, 204, 520, 597, 654, 698
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
BstMCI	CGRYCG	1 cut(s)	520
BstPI	GGTNACC	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	202, 215, 313, 563
BstX2I	RGATCY	3 cut(s)	94, 651, 695
BstYI	RGATCY	3 cut(s)	94, 651, 695
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	156, 256, 712
BtsCI	GGATG	2 cut(s)	124, 675
BtsIMutI	CAGTG	2 cut(s)	174, 524
BveI	ACCTGC	1 cut(s)	60
CciI	TCATGA	2 cut(s)	196, 591
Cfr13I	GGNCC	2 cut(s)	683, 710
Csp6I	GTAC	2 cut(s)	249, 357
CviAII	CATG	5 cut(s)	59, 197, 546, 570, 592
CviQI	GTAC	2 cut(s)	249, 357
DdeI	CTNAG	7 cut(s)	10, 75, 330, 341, 527, 533, 724
DpnI	GATC	6 cut(s)	96, 203, 519, 596, 653, 697
DpnII	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
DraI	TTTAAA	1 cut(s)	498
Eco130I	CCWWGG	3 cut(s)	90, 679, 706
Eco147I	AGGCCT	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	3 cut(s)	90, 679, 706
ErhI	CCWWGG	3 cut(s)	90, 679, 706
FaeI	CATG	5 cut(s)	62, 200, 549, 573, 595
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	5 cut(s)	58, 196, 545, 569, 591
Fnu4HI	GCNGC	4 cut(s)	191, 229, 327, 577
FokI	GGATG	2 cut(s)	131, 662
Fsp4HI	GCNGC	4 cut(s)	191, 229, 327, 577
GluI	GCNGC	4 cut(s)	191, 229, 327, 577
HaeIII	GGCC	3 cut(s)	156, 256, 712
Hin1II	CATG	5 cut(s)	62, 200, 549, 573, 595
HindIII	AAGCTT	2 cut(s)	17, 161
HinfI	GANTC	2 cut(s)	43, 410
HphI	GGTGA	4 cut(s)	419, 467, 695, 712
Hpy166II	GTNNAC	4 cut(s)	277, 359, 524, 703
Hpy188I	TCNGA	3 cut(s)	78, 215, 564
Hpy188III	TCNNGA	4 cut(s)	197, 382, 515, 592
Hpy8I	GTNNAC	4 cut(s)	277, 359, 524, 703
HpyAV	CCTTC	2 cut(s)	242, 428
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	7 cut(s)	190, 298, 443, 600, 693, 742, 758
HpyF3I	CTNAG	7 cut(s)	10, 75, 330, 341, 527, 533, 724
Hsp92II	CATG	5 cut(s)	62, 200, 549, 573, 595
Kzo9I	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	4 cut(s)	202, 215, 313, 563
LweI	GCATC	2 cut(s)	381, 430
MaeIII	GTNAC	3 cut(s)	125, 455, 671
MalI	GATC	6 cut(s)	96, 203, 519, 596, 653, 697
MboI	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
MboII	GAAGA	5 cut(s)	19, 89, 91, 92, 416
MflI	RGATCY	3 cut(s)	94, 651, 695
MluCI	AATT	3 cut(s)	209, 290, 666
MnlI	CCTC	9 cut(s)	167, 204, 327, 378, 408, 522, 666, 733, 773
MseI	TTAA	2 cut(s)	351, 497
MslI	CAYNNNNRTG	1 cut(s)	321
NdeII	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
NlaIII	CATG	5 cut(s)	62, 200, 549, 573, 595
NlaIV	GGNNCC	1 cut(s)	653
NmuCI	GTSAC	3 cut(s)	125, 455, 671
PagI	TCATGA	2 cut(s)	196, 591
PceI	AGGCCT	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	43, 410
PkrI	GCNGC	4 cut(s)	192, 230, 328, 578
Ple19I	CGATCG	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	2 cut(s)	683, 710
PsuI	RGATCY	3 cut(s)	94, 651, 695
PvuI	CGATCG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	250, 358
RsaNI	GTAC	2 cut(s)	249, 357
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	351, 497
SatI	GCNGC	4 cut(s)	191, 229, 327, 577
Sau3AI	GATC	6 cut(s)	94, 201, 517, 594, 651, 695
Sau96I	GGNCC	2 cut(s)	683, 710
SfaNI	GCATC	2 cut(s)	381, 430
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	3 cut(s)	38, 158, 167
SmoI	CTYRAG	3 cut(s)	38, 158, 167
Sse9I	AATT	3 cut(s)	209, 290, 666
SseBI	AGGCCT	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	256
StyI	CCWWGG	3 cut(s)	90, 679, 706
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	1 cut(s)	516
TasI	AATT	3 cut(s)	209, 290, 666
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	43, 410
Tru1I	TTAA	2 cut(s)	351, 497
Tru9I	TTAA	2 cut(s)	351, 497
TscAI	CASTG	2 cut(s)	181, 531
TseFI	GTSAC	3 cut(s)	125, 455, 671
TseI	GCWGC	4 cut(s)	190, 228, 326, 576
Tsp45I	GTSAC	3 cut(s)	125, 455, 671
TspDTI	ATGAA	6 cut(s)	11, 17, 92, 410, 571, 580
TspRI	CASTG	2 cut(s)	181, 531
VpaK11BI	GGWCC	1 cut(s)	683
XagI	CCTNNNNNAGG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.