Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

69564652 .. 69565638

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTTGTCTGTTGCTATATGTTGATGACATTGTTATAACTGGTACTGATAGACTTGGCATATCAGCTGTTATCACTGAACTCAGTGATGTATTTGACATGAAGGATCTAGGTTCATTGTCATATTTTCTGGGAATTGAGGTTCAAATTAAAGAAAAAGGATTACTTCTTTCTCAAGAAAAATATGCCAGAGAATTGATCATCAAGGCTGGTCTTGAAACTTGCAAGGACTGCATTACTCCTTGTATTCCTCATATGCAGATGCTTAAGACTGAAGGTACATTGCTTTCCAACCCATCTCTTTATAGAAGTATTGTTGGTGCTCTGCAATACCTCACATTTACAAGGCCAGATATTGCCTTTGCTGTGAACACTGTATGTCAGTTCATGTCTGCTCCTACAGATGTTCACTTTGCAGCTGTGAAAAGAATTTTGAGGTATCTTCAGGGTACTCTAGCCAAGGGACTGTTCTTTAAGTTTGGAAAGACTGTGCCTTACATTAATGCATACTGTGATGCTGATTGGGCTGGAGAGATCAATCAAAGGAGATCCACAACTGGTTTTATTGTCTATCTTGGTCATTGTCCTGTGTCATGGCAGTCAAAGAAACAAGGATCTGTTTCTAGAAGCTCCACTGAAGCTGAATATAGGGCTTTGGCAAATACTGCTGCTGAAATCTCTTGGGTTAGACACATTCTGTGTGATCTGCACATTAGAGTTCCTGCTCCACCTCTTCTAAAGTGTGATAATCTCTCTGCACTTGCTTTATGTTCTAATCCAGTATTCCATTCCAGGATTAAACACTTGGATAATGACTTTCATTTTGTTCGAGAGAGGGATCAAAGACAAGATCTGCTTCTGCAGTATGTGCCTACAAATCAACAAACTGCTGATATTCTAACCAAAGGGCTTCACAGTCCAGTCTTCAAGGAACACTGCTCCAATCTCAGTGTGCTCACCCCCACTGAGATTGAGGGGAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

7.54

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	5 - 83	2.1e-15	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AclWI	GGATC	4 cut(s)	114, 543, 622, 846
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	3 cut(s)	294, 428, 657
AfaI	GTAC	3 cut(s)	46, 280, 451
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	146, 218, 928
AjnI	CCWGG	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	68, 419, 630, 641
AluI	AGCT	4 cut(s)	68, 419, 630, 641
Alw21I	GWGCWC	2 cut(s)	325, 957
AlwI	GGATC	4 cut(s)	114, 543, 622, 846
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	416, 668
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AseI	ATTAAT	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	2 cut(s)	325, 957
BbvI	GCAGC	2 cut(s)	428, 655
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	793
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	3 cut(s)	110, 455, 624
BfmI	CTRYAG	2 cut(s)	399, 860
BfrI	CTTAAG	1 cut(s)	266
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	2 cut(s)	417, 669
BlsI	GCNGC	2 cut(s)	418, 670
Bme1390I	CCNGG	1 cut(s)	793
BmrFI	CCNGG	1 cut(s)	793
BmsI	GCATC	2 cut(s)	252, 505
BpiI	GAAGAC	1 cut(s)	916
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	459
Bse1I	ACTGG	4 cut(s)	46, 562, 779, 920
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	793
BseDI	CCNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	97, 957, 961
BseNI	ACTGG	4 cut(s)	46, 562, 779, 920
BseXI	GCAGC	2 cut(s)	428, 655
BsgI	GTGCAG	2 cut(s)	692, 741
BshFI	GGCC	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	325, 957
BslFI	GGGAC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	325, 957
Bsp143I	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	3 cut(s)	96, 958, 960
BspMAI	CTGCAG	1 cut(s)	864
BspPI	GGATC	4 cut(s)	114, 543, 622, 846
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	46, 562, 779, 920
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	5 cut(s)	376, 468, 490, 512, 917
Bst6I	CTCTTC	1 cut(s)	738
BstAFI	CTTAAG	1 cut(s)	266
BstAPI	GCANNNNNTGC	3 cut(s)	231, 665, 868
BstDEI	CTNAG	3 cut(s)	83, 947, 966
BstKTI	GATC	8 cut(s)	109, 201, 537, 551, 617, 706, 841, 853
BstMBI	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 524, 665, 868
BstNI	CCWGG	1 cut(s)	793
BstSCI	CCNGG	1 cut(s)	791
BstSFI	CTRYAG	2 cut(s)	399, 860
BstV1I	GCAGC	2 cut(s)	428, 655
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	4 cut(s)	106, 548, 614, 850
BstYI	RGATCY	4 cut(s)	106, 548, 614, 850
BsuRI	GGCC	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	934
BtsIMutI	CAGTG	7 cut(s)	75, 91, 372, 633, 934, 955, 963
Csp6I	GTAC	3 cut(s)	45, 279, 450
CspCI	CAANNNNNGTGG	2 cut(s)	952, 987
CviAII	CATG	3 cut(s)	100, 388, 594
CviQI	GTAC	3 cut(s)	45, 279, 450
DdeI	CTNAG	3 cut(s)	83, 947, 966
DpnI	GATC	8 cut(s)	108, 200, 536, 550, 616, 705, 840, 852
DpnII	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	294, 428, 657
EcoRII	CCWGG	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	103, 391, 597
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 840, 872
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	3 cut(s)	99, 387, 593
FauNDI	CATATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	417, 669
Fsp4HI	GCNGC	2 cut(s)	417, 669
FspBI	CTAG	3 cut(s)	110, 455, 624
GluI	GCNGC	2 cut(s)	417, 669
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	103, 391, 597
HphI	GGTGA	1 cut(s)	949
Hpy166II	GTNNAC	2 cut(s)	370, 409
Hpy188III	TCNNGA	4 cut(s)	176, 215, 624, 830
Hpy8I	GTNNAC	2 cut(s)	370, 409
HpyAV	CCTTC	2 cut(s)	97, 269
HpyCH4III	ACNGT	5 cut(s)	376, 468, 490, 512, 917
HpyCH4V	TGCA	9 cut(s)	225, 234, 259, 328, 416, 506, 709, 758, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 524, 665, 868
HpyF3I	CTNAG	3 cut(s)	83, 947, 966
Hsp92II	CATG	3 cut(s)	103, 391, 597
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
LmnI	GCTCC	4 cut(s)	400, 635, 730, 944
Lsp1109I	GCAGC	2 cut(s)	428, 655
LweI	GCATC	2 cut(s)	252, 505
MaeI	CTAG	3 cut(s)	110, 455, 624
MalI	GATC	8 cut(s)	108, 200, 536, 550, 616, 705, 840, 852
MboI	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
MboII	GAAGA	3 cut(s)	434, 725, 916
MflI	RGATCY	4 cut(s)	106, 548, 614, 850
MhlI	GDGCHC	2 cut(s)	325, 957
MluCI	AATT	4 cut(s)	135, 147, 194, 429
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	8 cut(s)	133, 261, 344, 429, 741, 828, 967, 972
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	6 cut(s)	150, 267, 474, 501, 798, 985
MspA1I	CMGCKG	2 cut(s)	68, 419
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	231, 524, 665, 868
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
NlaIII	CATG	3 cut(s)	103, 391, 597
NsiI	ATGCAT	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	791
PkrI	GCNGC	2 cut(s)	418, 670
PshBI	ATTAAT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	864
PsuI	RGATCY	4 cut(s)	106, 548, 614, 850
PvuII	CAGCTG	2 cut(s)	68, 419
RsaI	GTAC	3 cut(s)	46, 280, 451
RsaNI	GTAC	3 cut(s)	45, 279, 450
SaqAI	TTAA	6 cut(s)	150, 267, 474, 501, 798, 985
SatI	GCNGC	2 cut(s)	417, 669
Sau3AI	GATC	8 cut(s)	106, 198, 534, 548, 614, 703, 838, 850
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	2 cut(s)	325, 957
SfaNI	GCATC	2 cut(s)	252, 505
SfcI	CTRYAG	2 cut(s)	399, 860
SmlI	CTYRAG	2 cut(s)	174, 266
SmoI	CTYRAG	2 cut(s)	174, 266
Sse9I	AATT	4 cut(s)	135, 147, 194, 429
SspMI	CTAG	3 cut(s)	110, 455, 624
StyD4I	CCNGG	1 cut(s)	791
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	5 cut(s)	376, 468, 490, 512, 917
TaqI	TCGA	1 cut(s)	829
TasI	AATT	4 cut(s)	135, 147, 194, 429
Tru1I	TTAA	6 cut(s)	150, 267, 474, 501, 798, 985
Tru9I	TTAA	6 cut(s)	150, 267, 474, 501, 798, 985
TscAI	CASTG	7 cut(s)	82, 91, 379, 640, 941, 955, 970
TseI	GCWGC	2 cut(s)	416, 668
TspDTI	ATGAA	4 cut(s)	105, 116, 376, 809
TspRI	CASTG	7 cut(s)	82, 91, 379, 640, 941, 955, 970
Vha464I	CTTAAG	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	1 cut(s)	429
XbaI	TCTAGA	1 cut(s)	623
XspI	CTAG	3 cut(s)	110, 455, 624
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.