Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

72719220 .. 72719841

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCATGCTATCTCAAGATCCTCTACTGAGGTAGAATATCGAAGTATGGCTGATACTACCTCTGAACTTCAATGGCTCATACACTTGCTTAAAGATCTGCATATTGAACTTGAGACCACACCTACTCTTCATTGTGATAATATATCAGTATTAGCTCTAGCTACTAATCCTGTTCATCATTCCAAACTCAAGCATGTAGAAGTGGATGTTCATTTTACAAGGGATAAAGTGAAGGCAGGGTTAACAGATTACAGTTTGTTGCTTGGAAGGAGCAACTTGCTGATTTGTTTACCAAAGGGCTATGTTTTCCACAACATTCTTATCTTTGCAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 gag_pre-integrs

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

6.48

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	71, 107
AluBI	AGCT	2 cut(s)	155, 161
AluI	AGCT	2 cut(s)	155, 161
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	131, 173
BsaI	GGTCTC	1 cut(s)	107
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	17, 94
BspCNI	CTCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	107
BssMI	GATC	2 cut(s)	17, 94
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	20, 97
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	17, 94
BstNSI	RCATGY	2 cut(s)	8, 197
BstX2I	RGATCY	2 cut(s)	17, 94
BstYI	RGATCY	2 cut(s)	17, 94
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	6
CviAII	CATG	2 cut(s)	5, 194
CviJI	RGCY	5 cut(s)	50, 76, 155, 161, 300
CviKI_1	RGCY	5 cut(s)	50, 76, 155, 161, 300
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	19, 96
DpnII	GATC	2 cut(s)	17, 94
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 197
FaiI	YATR	7 cut(s)	6, 47, 80, 102, 143, 195, 303
FatI	CATG	2 cut(s)	4, 193
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	8, 197
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HpaI	GTTAAC	1 cut(s)	243
Hpy166II	GTNNAC	2 cut(s)	243, 290
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	2 cut(s)	243, 290
HpyAV	CCTTC	2 cut(s)	226, 261
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	4, 100, 329
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	8, 197
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	17, 94
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	2 cut(s)	183, 222
MaeI	CTAG	1 cut(s)	158
MalI	GATC	2 cut(s)	19, 96
MboI	GATC	2 cut(s)	17, 94
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	2 cut(s)	17, 94
MnlI	CCTC	3 cut(s)	22, 31, 70
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	90, 242
NdeII	GATC	2 cut(s)	17, 94
NlaIII	CATG	2 cut(s)	8, 197
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 197
PaeI	GCATGC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	17, 94
SaqAI	TTAA	2 cut(s)	90, 242
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	17, 94
SetI	ASST	5 cut(s)	33, 62, 124, 157, 163
SmlI	CTYRAG	3 cut(s)	13, 110, 188
SmoI	CTYRAG	3 cut(s)	13, 110, 188
SphI	GCATGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	90, 242
Tru9I	TTAA	2 cut(s)	90, 242
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	119, 164, 200
XceI	RCATGY	2 cut(s)	8, 197
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.