Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

7285001 .. 7289128

Gene Structure 4128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1067200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGGTTAGATACAATGACATGTGTCAAGAGATCAGTATGGTTGTTATAAGAAGGATAAGGTGTCTTAGTGAACAAGTATATGGAAGACTATATAACAATTGTAACAAGTGTCATGGAATTATGGGGTTCTTGGATGGTTCTAGTCCTTGTCCTGCACAGTTTGGCTCTTCTGGGTCTGGAGATTCTGATATAGATTCTGGAGATTCATCGTCACGAATTGAAACAGACGAATACAAGATCTGGAAGATGCATGATCGAGCTTTGATGCAGCTTATTACTGTCACCCTTTCTCCATCCGTTATTTCATGTGTCATTGGAAGTACAAGTGCTCGGGATCTATGGATTCGTCTCAAAGAGCAATTCTCTATTATTACTCGTGCAACCATATTCCAAATGAAGTCTGAGTTACAGAATATCAAGAAAGGCCCTGATTCTATATCTCAATTCTTGCAGAAGATTAAGGCAGCTCGTGATTATTTGGTAGCTGCCGGAGTCCATTTCGAGGATGATGATATTGTCATTCTAACTCTTAATGGCTTATCGGGAGAATATAATACCATCCGATCTATCATTCAAGGTAGAGAGAATGTTATTTCTCTCAAAGATCTGAGGTCTCAGTTGCTTGCTGAAGAAGCAATGATTGAGAATACAGCTGACAAAGCCACAGGAAGTACTTTGTACAAGGGCCAGTGCAGTAATGGGTTATATCCAATACCAATGTCAAGACCAGCTGCAATTCAGAATCAAGACTATAAAGCTGCATTTCTTGGACAGCAAGTACACTCCAATTTATGGCATAGCAGACTAGGTCACCCATCCAATTCCATTATGTCTACTATACTTAGAAAGTCTAATATCTCAATCCCATATGATGTCTCATCTTCTGTGTGTCATTCTTGTTTACAAGGAAAATTCAGCAAGCTCCCATTTTCATCATCTGTGTCTAAAGCTGTAAATCCCTTCCAAATAGTTCATAGTGATGTCTGGGGCCCTGCTCCTTGTACCTCTATTGATGGTTTTAAATACTACGTGACATTCATTGATGAATGTACTATATATTGTTGGCTATTTCCTCTACATAATAAAAGTGAAGTCTGCTCTGTGTTCATTGGTTTATATCAGTTCATTTTTAATCACTTTGCAGTTTCTGTTAAAACTTTACAAAGTGATGGGGGTGGGGAATATACAAGTCACATTCTTCAATCCTTCCTGATAGATAAAGGGATCACTCATCAAATATCATGTCCCCATACTCCAGAGCAAAATGGGCTGGCAGAACGAAAACATAGGCATCTAGTTGCTCAGTTCATGCAATGTCCCATGGAGTCACATTACTTGGCTGTGAAAAGGATATTAAGGTATCTTAACGGTACTCAACACTATGGTATTCAATATATTAAGGGCGAGTTGGAGTTAAATGCATTTAGTGATGCGGACTGGGCATGGGATCCTAATGATAGACGTTCTACAACAGGATTGGTTGTTTTCTTGGGCTTTAATCCCATCTCGTGGTCATCAAAAAAGCAGAACACCATTTCTCGCTCATCTACTGAAGCTGAGTATCGCGCAATTGCTACAACAGCCGCTGAGATTGATTGGATAAGACAGATTCTTACTTTTCTGCAGATTGAAGTTTCAACTCCATCCATTATGTTTTGTGATAACCTCTCGGCTATTGCTCTTACCTGTAATCCAGTGATGCATCAACGAACCAAACATATTGAGATTGATGTCCATTTTGTTCGAGAAAGGGTTGCCAAACATTTACTTCACATGCAGTTTGTATCTTCTAATGAGCAATTTGCTGATATTCTGACAAAGGGCCTATCTGCACCATTTTTTCGTGCTCATTGTTGCAATCTCAGGCTTCGTGGTCCTTCTCCTAAGTTTGAGGGAGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

635

Amino Acids

71.3

Weight (kDa)

8.0

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	75 - 212	3.7e-18	gag-polypeptide of LTR copia-type
gag_pre-integrs	PF13976	254 - 304	5.9e-12	GAG-pre-integrase domain
rve	PF00665	319 - 419	1.4e-13	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AccB7I	CCANNNNNTGG	2 cut(s)	792, 1509
AccI	GTMKAC	1 cut(s)	833
AccII	CGCG	1 cut(s)	1566
AciI	CCGC	2 cut(s)	1433, 1584
AclWI	GGATC	4 cut(s)	342, 1232, 1442, 1455
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	2 cut(s)	648, 1572
AfaI	GTAC	7 cut(s)	322, 673, 680, 780, 1003, 1051, 1372
AfiI	CCNNNNNNNGG	3 cut(s)	502, 792, 1509
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	6 cut(s)	221, 575, 1202, 1391, 1631, 1638
Alw21I	GWGCWC	2 cut(s)	331, 1849
Alw26I	GTCTC	3 cut(s)	353, 618, 880
AlwI	GGATC	4 cut(s)	342, 1232, 1442, 1455
AlwNI	CAGNNNCTG	2 cut(s)	1148, 1586
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	4 cut(s)	424, 685, 988, 1822
ApaI	GGGCCC	1 cut(s)	992
ApeKI	GCWGC	5 cut(s)	268, 464, 485, 731, 758
ApoI	RAATTY	1 cut(s)	911
ArsI	GACNNNNNNTTYG	2 cut(s)	1228, 1260
AspLEI	GCGC	1 cut(s)	1568
AspS9I	GGNCC	6 cut(s)	425, 685, 988, 989, 1822, 1874
AsuHPI	GGTGA	2 cut(s)	274, 803
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	1874
BaeGI	GKGCMC	1 cut(s)	992
BamHI	GGATCC	1 cut(s)	1447
BanII	GRGCYC	1 cut(s)	992
BauI	CACGAG	3 cut(s)	375, 468, 1507
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	331, 1849
BbvI	GCAGC	5 cut(s)	280, 472, 476, 718, 745
BccI	CCATC	8 cut(s)	128, 301, 566, 823, 1007, 1163, 1511, 1651
BcoDI	GTCTC	3 cut(s)	353, 618, 880
BfaI	CTAG	3 cut(s)	141, 806, 1295
BfmI	CTRYAG	1 cut(s)	1622
BglII	AGATCT	2 cut(s)	237, 604
BisI	GCNGC	6 cut(s)	269, 465, 486, 732, 759, 1584
BlsI	GCNGC	6 cut(s)	270, 466, 487, 733, 760, 1585
BmcAI	AGTACT	1 cut(s)	673
Bme18I	GGWCC	1 cut(s)	1874
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	6 cut(s)	425, 685, 988, 989, 1822, 1874
BmiI	GGNNCC	3 cut(s)	989, 990, 1449
BmrI	ACTGGG	1 cut(s)	1447
BmsI	GCATC	6 cut(s)	237, 255, 1300, 1420, 1689, 1711
BmuI	ACTGGG	1 cut(s)	1447
BoxI	GACNNNNGTC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	3 cut(s)	198, 219, 1239
BsaAI	YACGTR	1 cut(s)	1030
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	1320
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 792, 1509
Bse1I	ACTGG	3 cut(s)	688, 1442, 1694
Bse3DI	GCAATG	2 cut(s)	642, 1319
BseDI	CCNNGG	1 cut(s)	1320
BseGI	GGATG	7 cut(s)	139, 293, 511, 558, 815, 1643, 1904
BseLI	CCNNNNNNNGG	3 cut(s)	502, 792, 1509
BseMI	GCAATG	2 cut(s)	642, 1319
BseMII	CTCAG	7 cut(s)	393, 599, 629, 1316, 1548, 1578, 1876
BseNI	ACTGG	3 cut(s)	688, 1442, 1694
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	5 cut(s)	280, 472, 476, 718, 745
BsgI	GTGCAG	3 cut(s)	138, 712, 1815
Bsh1236I	CGCG	1 cut(s)	1566
BshFI	GGCC	4 cut(s)	426, 687, 990, 1824
BsiHKAI	GWGCWC	2 cut(s)	331, 1849
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	1230, 1302
BslI	CCNNNNNNNGG	3 cut(s)	502, 792, 1509
BsmAI	GTCTC	3 cut(s)	353, 618, 880
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	1230, 1302
BsnI	GGCC	4 cut(s)	426, 687, 990, 1824
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	330
Bsp120I	GGGCCC	1 cut(s)	988
Bsp1286I	GDGCHC	3 cut(s)	331, 992, 1849
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
Bsp19I	CCATGG	1 cut(s)	1320
BspACI	CCGC	2 cut(s)	1433, 1584
BspANI	GGCC	4 cut(s)	426, 687, 990, 1824
BspCNI	CTCAG	7 cut(s)	394, 600, 628, 1315, 1549, 1579, 1875
BspFNI	CGCG	1 cut(s)	1566
BspLI	GGNNCC	3 cut(s)	989, 990, 1449
BspMAI	CTGCAG	1 cut(s)	1626
BspPI	GGATC	4 cut(s)	342, 1232, 1442, 1455
BspQI	GCTCTTC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	618
BsrDI	GCAATG	2 cut(s)	642, 1319
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	3 cut(s)	688, 1442, 1694
BssECI	CCNNGG	1 cut(s)	1320
BssMI	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
BssSI	CACGAG	3 cut(s)	375, 468, 1507
BssT1I	CCWWGG	1 cut(s)	1320
Bst2BI	CACGAG	3 cut(s)	375, 468, 1507
Bst4CI	ACNGT	3 cut(s)	159, 280, 1370
Bst6I	CTCTTC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	1030
BstC8I	GCNNGC	3 cut(s)	624, 920, 1272
BstDSI	CCRYGG	1 cut(s)	1320
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	7 cut(s)	139, 293, 511, 558, 815, 1643, 1904
BstFNI	CGCG	1 cut(s)	1566
BstHHI	GCGC	1 cut(s)	1568
BstKTI	GATC	8 cut(s)	33, 240, 256, 337, 566, 607, 1227, 1450
BstMAI	GTCTC	3 cut(s)	353, 618, 880
BstMBI	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
BstMWI	GCNNNNNNNGC	5 cut(s)	632, 659, 1267, 1439, 1580
BstNSI	RCATGY	2 cut(s)	22, 1777
BstPAI	GACNNNNGTC	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	1622
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	1 cut(s)	1566
BstV1I	GCAGC	5 cut(s)	280, 472, 476, 718, 745
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	4 cut(s)	237, 334, 604, 1447
BstYI	RGATCY	4 cut(s)	237, 334, 604, 1447
BsuRI	GGCC	4 cut(s)	426, 687, 990, 1824
BtgI	CCRYGG	1 cut(s)	1320
BtsCI	GGATG	7 cut(s)	139, 293, 511, 558, 815, 1643, 1904
BtsIMutI	CAGTG	2 cut(s)	695, 1701
Cac8I	GCNNGC	3 cut(s)	624, 920, 1272
CaiI	CAGNNNCTG	2 cut(s)	1148, 1586
CfoI	GCGC	1 cut(s)	1568
Cfr13I	GGNCC	6 cut(s)	425, 685, 988, 989, 1822, 1874
Csp6I	GTAC	7 cut(s)	321, 672, 679, 779, 1002, 1050, 1371
CviAII	CATG	9 cut(s)	19, 113, 251, 306, 1242, 1309, 1321, 1443, 1774
CviQI	GTAC	7 cut(s)	321, 672, 679, 779, 1002, 1050, 1371
DpnI	GATC	8 cut(s)	32, 239, 255, 336, 565, 606, 1226, 1449
DpnII	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
DraI	TTTAAA	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	1320
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	1874
Eco57I	CTGAAG	2 cut(s)	648, 1572
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	809
EcoO109I	RGGNCCY	4 cut(s)	425, 988, 989, 1822
EcoO65I	GGTNACC	1 cut(s)	809
EcoT14I	CCWWGG	1 cut(s)	1320
EcoT22I	ATGCAT	3 cut(s)	252, 1423, 1704
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	1320
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	9 cut(s)	22, 116, 254, 309, 1245, 1312, 1324, 1446, 1777
FaqI	GGGAC	2 cut(s)	1230, 1302
FatI	CATG	9 cut(s)	18, 112, 250, 305, 1241, 1308, 1320, 1442, 1773
FauNDI	CATATG	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	6 cut(s)	269, 465, 486, 732, 759, 1584
FokI	GGATG	6 cut(s)	146, 280, 518, 545, 802, 1630
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	6 cut(s)	269, 465, 486, 732, 759, 1584
FspBI	CTAG	3 cut(s)	141, 806, 1295
GlaI	GCGC	1 cut(s)	1567
GluI	GCNGC	6 cut(s)	269, 465, 486, 732, 759, 1584
GsuI	CTGGAG	3 cut(s)	198, 219, 1239
HaeIII	GGCC	4 cut(s)	426, 687, 990, 1824
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	1568
Hin1II	CATG	9 cut(s)	22, 116, 254, 309, 1245, 1312, 1324, 1446, 1777
Hin6I	GCGC	1 cut(s)	1566
HinP1I	GCGC	1 cut(s)	1566
HinfI	GANTC	9 cut(s)	182, 194, 203, 343, 431, 492, 742, 1325, 1609
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	2 cut(s)	274, 803
Hpy166II	GTNNAC	4 cut(s)	71, 781, 834, 902
Hpy188I	TCNGA	6 cut(s)	187, 403, 563, 609, 741, 1815
Hpy8I	GTNNAC	4 cut(s)	71, 781, 834, 902
HpyAV	CCTTC	4 cut(s)	45, 970, 1216, 1887
HpyCH4III	ACNGT	3 cut(s)	159, 280, 1370
HpyCH4IV	ACGT	2 cut(s)	1029, 1462
HpyF10VI	GCNNNNNNNGC	5 cut(s)	632, 659, 1267, 1439, 1580
HpySE526I	ACGT	2 cut(s)	1029, 1462
Hsp92II	CATG	9 cut(s)	22, 116, 254, 309, 1245, 1312, 1324, 1446, 1777
HspAI	GCGC	1 cut(s)	1566
Kzo9I	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	927, 1000
Lsp1109I	GCAGC	5 cut(s)	280, 472, 476, 718, 745
LweI	GCATC	6 cut(s)	237, 255, 1300, 1420, 1689, 1711
MaeI	CTAG	3 cut(s)	141, 806, 1295
MaeII	ACGT	2 cut(s)	1029, 1462
MaeIII	GTNAC	8 cut(s)	101, 210, 280, 405, 809, 1030, 1190, 1326
MalI	GATC	8 cut(s)	32, 239, 255, 336, 565, 606, 1226, 1449
MboI	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
MboII	GAAGA	8 cut(s)	96, 159, 256, 466, 641, 873, 1190, 1779
MfeI	CAATTG	2 cut(s)	97, 1569
MflI	RGATCY	4 cut(s)	237, 334, 604, 1447
MhlI	GDGCHC	3 cut(s)	331, 992, 1849
MlyI	GAGTC	2 cut(s)	501, 1334
MmeI	TCCRAC	1 cut(s)	1389
MnlI	CCTC	7 cut(s)	496, 603, 1015, 1083, 1676, 1885, 1889
Mph1103I	ATGCAT	3 cut(s)	252, 1423, 1704
MslI	CAYNNNNRTG	1 cut(s)	978
MspA1I	CMGCKG	3 cut(s)	653, 731, 1586
MspI	CCGG	1 cut(s)	489
MunI	CAATTG	2 cut(s)	97, 1569
MvnI	CGCG	1 cut(s)	1566
MwoI	GCNNNNNNNGC	5 cut(s)	632, 659, 1267, 1439, 1580
NcoI	CCATGG	1 cut(s)	1320
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
NlaIII	CATG	9 cut(s)	22, 116, 254, 309, 1245, 1312, 1324, 1446, 1777
NlaIV	GGNNCC	3 cut(s)	989, 990, 1449
NmeAIII	GCCGAG	1 cut(s)	1649
NmuCI	GTSAC	6 cut(s)	210, 280, 809, 1030, 1190, 1326
NsiI	ATGCAT	3 cut(s)	252, 1423, 1704
NspI	RCATGY	2 cut(s)	22, 1777
PciI	ACATGT	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	172
PfeI	GAWTC	7 cut(s)	182, 194, 203, 343, 431, 742, 1609
PflFI	GACNNNGTC	1 cut(s)	807
PflMI	CCANNNNNTGG	2 cut(s)	792, 1509
PkrI	GCNGC	6 cut(s)	270, 466, 487, 733, 760, 1585
PleI	GAGTC	2 cut(s)	500, 1333
PpsI	GAGTC	2 cut(s)	500, 1333
Ppu21I	YACGTR	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	809
PspN4I	GGNNCC	3 cut(s)	989, 990, 1449
PspOMI	GGGCCC	1 cut(s)	988
PspPI	GGNCC	6 cut(s)	425, 685, 988, 989, 1822, 1874
PstI	CTGCAG	1 cut(s)	1626
PstNI	CAGNNNCTG	2 cut(s)	1148, 1586
PsuI	RGATCY	4 cut(s)	237, 334, 604, 1447
PsyI	GACNNNGTC	1 cut(s)	807
PvuII	CAGCTG	2 cut(s)	653, 731
RsaI	GTAC	7 cut(s)	322, 673, 680, 780, 1003, 1051, 1372
RsaNI	GTAC	7 cut(s)	321, 672, 679, 779, 1002, 1050, 1371
RseI	CAYNNNNRTG	1 cut(s)	978
SapI	GCTCTTC	1 cut(s)	172
SatI	GCNGC	6 cut(s)	269, 465, 486, 732, 759, 1584
Sau3AI	GATC	8 cut(s)	30, 237, 253, 334, 563, 604, 1224, 1447
Sau96I	GGNCC	6 cut(s)	425, 685, 988, 989, 1822, 1874
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	2 cut(s)	501, 1334
SduI	GDGCHC	3 cut(s)	331, 992, 1849
SfaNI	GCATC	6 cut(s)	237, 255, 1300, 1420, 1689, 1711
SfcI	CTRYAG	1 cut(s)	1622
SinI	GGWCC	1 cut(s)	1874
SmiMI	CAYNNNNRTG	1 cut(s)	978
SsiI	CCGC	2 cut(s)	1433, 1584
SspMI	CTAG	3 cut(s)	141, 806, 1295
StyI	CCWWGG	1 cut(s)	1320
TaaI	ACNGT	3 cut(s)	159, 280, 1370
TaiI	ACGT	2 cut(s)	1032, 1465
TaqI	TCGA	3 cut(s)	256, 501, 1744
TatI	WGTACW	5 cut(s)	320, 671, 678, 778, 1049
TauI	GCSGC	1 cut(s)	1586
TfiI	GAWTC	7 cut(s)	182, 194, 203, 343, 431, 742, 1609
TscAI	CASTG	2 cut(s)	695, 1701
TseFI	GTSAC	6 cut(s)	210, 280, 809, 1030, 1190, 1326
TseI	GCWGC	5 cut(s)	268, 464, 485, 731, 758
Tsp45I	GTSAC	6 cut(s)	210, 280, 809, 1030, 1190, 1326
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	695, 1701
Tth111I	GACNNNGTC	1 cut(s)	807
Van91I	CCANNNNNTGG	2 cut(s)	792, 1509
VpaK11BI	GGWCC	1 cut(s)	1874
XapI	RAATTY	1 cut(s)	911
XceI	RCATGY	2 cut(s)	22, 1777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	833
XspI	CTAG	3 cut(s)	141, 806, 1295
ZrmI	AGTACT	1 cut(s)	673
Zsp2I	ATGCAT	3 cut(s)	252, 1423, 1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.