gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00240 |
| fragaria_vesca | FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681 |
| malus_domestica | MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1 |
| pyrus_communis | pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210 |
| rosa_chinensis | RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081 |
| rosa_laevigata | RLG00000035859 |
| rosa_roxburghii | Rroxscaffold_4G00281750 |
| rosa_wichuraiana | Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 630, 1941, 3755, 5837 |
| AarI | CACCTGC | 1 cut(s) | 2128 |
| AatII | GACGTC | 1 cut(s) | 2003 |
| Acc36I | ACCTGC | 3 cut(s) | 947, 1737, 2128 |
| Acc65I | GGTACC | 2 cut(s) | 4660, 5814 |
| AccB1I | GGYRCC | 6 cut(s) | 45, 2162, 4276, 4373, 4660, 5814 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 373, 1826, 4287, 6926 |
| AccBSI | CCGCTC | 1 cut(s) | 6709 |
| AccI | GTMKAC | 1 cut(s) | 4188 |
| AclI | AACGTT | 2 cut(s) | 4061, 6439 |
| AcoI | YGGCCR | 2 cut(s) | 221, 1906 |
| AcuI | CTGAAG | 6 cut(s) | 699, 1592, 1620, 3882, 5436, 6908 |
| AcvI | CACGTG | 1 cut(s) | 3691 |
| AcyI | GRCGYC | 2 cut(s) | 2000, 2163 |
| AdeI | CACNNNGTG | 1 cut(s) | 5200 |
| AflII | CTTAAG | 2 cut(s) | 3842, 5747 |
| AflIII | ACRYGT | 4 cut(s) | 1804, 3403, 3688, 5983 |
| AjiI | CACGTC | 1 cut(s) | 1553 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 916, 948, 3311, 3343, 4217, 4249, 4437, 4469 |
| AleI | CACNNNNGTG | 2 cut(s) | 1025, 4088 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1282, 1314 |
| Alw21I | GWGCWC | 7 cut(s) | 147, 920, 1311, 3889, 4443, 4752, 5196 |
| Alw26I | GTCTC | 7 cut(s) | 1348, 3204, 3381, 3779, 3922, 5894, 6857 |
| Alw44I | GTGCAC | 3 cut(s) | 916, 4748, 5192 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2039, 4228, 5494 |
| Ama87I | CYCGRG | 2 cut(s) | 1302, 1613 |
| AoxI | GGCC | 9 cut(s) | 221, 1906, 2057, 2433, 4194, 4727, 5281, 5764, 6734 |
| ApaLI | GTGCAC | 3 cut(s) | 916, 4748, 5192 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1807, 1839 |
| AseI | ATTAAT | 2 cut(s) | 3165, 3546 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1608, 3767, 5544, 6522 |
| Asp718I | GGTACC | 2 cut(s) | 4660, 5814 |
| AspA2I | CCTAGG | 1 cut(s) | 866 |
| AspLEI | GCGC | 5 cut(s) | 1151, 2165, 4703, 4818, 5101 |
| AsuC2I | CCSGG | 2 cut(s) | 4041, 6733 |
| AsuII | TTCGAA | 1 cut(s) | 1049 |
| AvaI | CYCGRG | 2 cut(s) | 1302, 1613 |
| AvaII | GGWCC | 7 cut(s) | 1952, 2362, 2771, 3505, 3987, 4493, 5169 |
| AvrII | CCTAGG | 1 cut(s) | 866 |
| BaeGI | GKGCMC | 5 cut(s) | 920, 4378, 4752, 5196, 5293 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2082, 2115, 3349, 3382 |
| BamHI | GGATCC | 3 cut(s) | 1676, 4216, 4906 |
| BanI | GGYRCC | 6 cut(s) | 45, 2162, 4276, 4373, 4660, 5814 |
| BanII | GRGCYC | 4 cut(s) | 147, 402, 1311, 4443 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6353, 6385 |
| BauI | CACGAG | 1 cut(s) | 943 |
| BbrPI | CACGTG | 1 cut(s) | 3691 |
| Bbv12I | GWGCWC | 7 cut(s) | 147, 920, 1311, 3889, 4443, 4752, 5196 |
| BceAI | ACGGC | 4 cut(s) | 236, 1699, 4594, 5055 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3989, 4023 |
| BciVI | GTATCC | 3 cut(s) | 5254, 5341, 5669 |
| BclI | TGATCA | 2 cut(s) | 3667, 6453 |
| BcnI | CCSGG | 2 cut(s) | 4041, 6733 |
| BcoDI | GTCTC | 7 cut(s) | 1348, 3204, 3381, 3779, 3922, 5894, 6857 |
| BfaI | CTAG | 9 cut(s) | 234, 653, 848, 867, 1106, 1353, 2658, 3399, 6680 |
| BfmI | CTRYAG | 1 cut(s) | 1266 |
| BfoI | RGCGCY | 1 cut(s) | 2166 |
| BfrI | CTTAAG | 2 cut(s) | 3842, 5747 |
| BfuAI | ACCTGC | 3 cut(s) | 947, 1737, 2128 |
| BfuI | GTATCC | 3 cut(s) | 5254, 5341, 5669 |
| BlnI | CCTAGG | 1 cut(s) | 866 |
| BmcAI | AGTACT | 1 cut(s) | 2027 |
| Bme18I | GGWCC | 7 cut(s) | 1952, 2362, 2771, 3505, 3987, 4493, 5169 |
| BmeT110I | CYCGRG | 2 cut(s) | 1302, 1613 |
| BmgBI | CACGTC | 1 cut(s) | 1553 |
| BmrI | ACTGGG | 5 cut(s) | 3118, 3224, 3576, 4064, 5147 |
| BmsI | GCATC | 9 cut(s) | 1209, 1227, 1262, 2216, 2395, 3162, 3717, 4879, 6930 |
| BmuI | ACTGGG | 5 cut(s) | 3118, 3224, 3576, 4064, 5147 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1805, 2658, 4491 |
| BpmI | CTGGAG | 2 cut(s) | 2016, 6326 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4437 |
| Bpu14I | TTCGAA | 1 cut(s) | 1049 |
| BpuEI | CTTGAG | 5 cut(s) | 312, 1279, 3265, 3803, 4619 |
| BpuMI | CCSGG | 2 cut(s) | 4041, 6733 |
| Bsa29I | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BsaAI | YACGTR | 2 cut(s) | 3691, 5984 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2799, 3801 |
| BsaHI | GRCGYC | 2 cut(s) | 2000, 2163 |
| BsaI | GGTCTC | 2 cut(s) | 3779, 5894 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1282, 1312, 1651, 1681, 4949, 4979 |
| Bse118I | RCCGGY | 1 cut(s) | 4920 |
| Bse3DI | GCAATG | 3 cut(s) | 544, 1485, 3873 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2799, 3801 |
| BseCI | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BseJI | GATNNNNATC | 2 cut(s) | 2799, 3801 |
| BseMI | GCAATG | 3 cut(s) | 544, 1485, 3873 |
| BseMII | CTCAG | 9 cut(s) | 1427, 1811, 1872, 3527, 4235, 4428, 5001, 5299, 6429 |
| BseRI | GAGGAG | 3 cut(s) | 106, 5982, 6323 |
| BseSI | GKGCMC | 5 cut(s) | 920, 4378, 4752, 5196, 5293 |
| BseYI | CCCAGC | 2 cut(s) | 1460, 4197 |
| BsgI | GTGCAG | 7 cut(s) | 925, 2485, 2760, 3651, 4098, 4589, 5255 |
| Bsh1285I | CGRYCG | 1 cut(s) | 6837 |
| BshFI | GGCC | 9 cut(s) | 223, 1908, 2059, 2435, 4196, 4729, 5283, 5766, 6736 |
| BshNI | GGYRCC | 6 cut(s) | 45, 2162, 4276, 4373, 4660, 5814 |
| BshVI | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BsiEI | CGRYCG | 1 cut(s) | 6837 |
| BsiHKAI | GWGCWC | 7 cut(s) | 147, 920, 1311, 3889, 4443, 4752, 5196 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1302, 1613 |
| BsiSI | CCGG | 4 cut(s) | 4040, 4730, 4921, 6732 |
| BslFI | GGGAC | 9 cut(s) | 1563, 1938, 2516, 3212, 3491, 3549, 3793, 3916, 4479 |
| BsmAI | GTCTC | 7 cut(s) | 1348, 3204, 3381, 3779, 3922, 5894, 6857 |
| BsmFI | GGGAC | 9 cut(s) | 1563, 1938, 2516, 3212, 3491, 3549, 3793, 3916, 4479 |
| BsmI | GAATGC | 4 cut(s) | 3976, 4159, 4170, 4515 |
| BsnI | GGCC | 9 cut(s) | 223, 1908, 2059, 2435, 4196, 4729, 5283, 5766, 6736 |
| Bso31I | GGTCTC | 2 cut(s) | 3779, 5894 |
| BsoBI | CYCGRG | 2 cut(s) | 1302, 1613 |
| Bsp119I | TTCGAA | 1 cut(s) | 1049 |
| Bsp1407I | TGTACA | 1 cut(s) | 3685 |
| Bsp19I | CCATGG | 2 cut(s) | 151, 1647 |
| BspANI | GGCC | 9 cut(s) | 223, 1908, 2059, 2435, 4196, 4729, 5283, 5766, 6736 |
| BspCNI | CTCAG | 9 cut(s) | 1426, 1810, 1873, 3526, 4234, 4429, 5002, 5298, 6428 |
| BspDI | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BspMI | ACCTGC | 3 cut(s) | 947, 1737, 2128 |
| BspT104I | TTCGAA | 1 cut(s) | 1049 |
| BspT107I | GGYRCC | 6 cut(s) | 45, 2162, 4276, 4373, 4660, 5814 |
| BspTI | CTTAAG | 2 cut(s) | 3842, 5747 |
| BspTNI | GGTCTC | 2 cut(s) | 3779, 5894 |
| BsrBI | CCGCTC | 1 cut(s) | 6709 |
| BsrDI | GCAATG | 3 cut(s) | 544, 1485, 3873 |
| BsrFI | RCCGGY | 1 cut(s) | 4920 |
| BsrGI | TGTACA | 1 cut(s) | 3685 |
| BssAI | RCCGGY | 1 cut(s) | 4920 |
| BssNAI | GTATAC | 1 cut(s) | 4189 |
| BssNI | GRCGYC | 2 cut(s) | 2000, 2163 |
| BssSI | CACGAG | 1 cut(s) | 943 |
| BssT1I | CCWWGG | 4 cut(s) | 151, 385, 866, 1647 |
| Bst1107I | GTATAC | 1 cut(s) | 4189 |
| Bst2BI | CACGAG | 1 cut(s) | 943 |
| Bst6I | CTCTTC | 2 cut(s) | 2011, 2985 |
| BstACI | GRCGYC | 2 cut(s) | 2000, 2163 |
| BstAFI | CTTAAG | 2 cut(s) | 3842, 5747 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4576, 5200 |
| BstAUI | TGTACA | 1 cut(s) | 3685 |
| BstBAI | YACGTR | 2 cut(s) | 3691, 5984 |
| BstBI | TTCGAA | 1 cut(s) | 1049 |
| BstC8I | GCNNGC | 7 cut(s) | 158, 465, 2082, 3065, 4009, 4275, 4581 |
| BstDSI | CCRYGG | 3 cut(s) | 151, 1647, 5037 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1671 |
| BstH2I | RGCGCY | 1 cut(s) | 2166 |
| BstHHI | GCGC | 5 cut(s) | 1151, 2165, 4703, 4818, 5101 |
| BstMAI | GTCTC | 7 cut(s) | 1348, 3204, 3381, 3779, 3922, 5894, 6857 |
| BstMCI | CGRYCG | 1 cut(s) | 6837 |
| BstNSI | RCATGY | 7 cut(s) | 1808, 2084, 2264, 3144, 3407, 4597, 4880 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1805, 2658, 4491 |
| BstSFI | CTRYAG | 1 cut(s) | 1266 |
| BstSLI | GKGCMC | 5 cut(s) | 920, 4378, 4752, 5196, 5293 |
| BstX2I | RGATCY | 6 cut(s) | 588, 1121, 1676, 3957, 4216, 4906 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3658, 4205 |
| BstYI | RGATCY | 6 cut(s) | 588, 1121, 1676, 3957, 4216, 4906 |
| BstZ17I | GTATAC | 1 cut(s) | 4189 |
| Bsu15I | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BsuI | GTATCC | 3 cut(s) | 5254, 5341, 5669 |
| BsuRI | GGCC | 9 cut(s) | 223, 1908, 2059, 2435, 4196, 4729, 5283, 5766, 6736 |
| BsuTUI | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| BtgI | CCRYGG | 3 cut(s) | 151, 1647, 5037 |
| BtgZI | GCGATG | 1 cut(s) | 4902 |
| BtrI | CACGTC | 1 cut(s) | 1553 |
| BtsI | GCAGTG | 2 cut(s) | 202, 4432 |
| BveI | ACCTGC | 3 cut(s) | 947, 1737, 2128 |
| Cac8I | GCNNGC | 7 cut(s) | 158, 465, 2082, 3065, 4009, 4275, 4581 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2039, 4228, 5494 |
| CfoI | GCGC | 5 cut(s) | 1151, 2165, 4703, 4818, 5101 |
| Cfr10I | RCCGGY | 1 cut(s) | 4920 |
| ClaI | ATCGAT | 3 cut(s) | 1013, 2584, 6065 |
| CsiI | ACCWGGT | 3 cut(s) | 1699, 2834, 5817 |
| DinI | GGCGCC | 1 cut(s) | 2164 |
| DraI | TTTAAA | 4 cut(s) | 5554, 6220, 6493, 6504 |
| DraIII | CACNNNGTG | 1 cut(s) | 5200 |
| EaeI | YGGCCR | 2 cut(s) | 221, 1906 |
| Eam1104I | CTCTTC | 2 cut(s) | 2011, 2985 |
| EarI | CTCTTC | 2 cut(s) | 2011, 2985 |
| EciI | GGCGGA | 2 cut(s) | 56, 5030 |
| Ecl136II | GAGCTC | 3 cut(s) | 145, 1309, 4441 |
| Eco130I | CCWWGG | 4 cut(s) | 151, 385, 866, 1647 |
| Eco147I | AGGCCT | 2 cut(s) | 2059, 5283 |
| Eco24I | GRGCYC | 4 cut(s) | 147, 402, 1311, 4443 |
| Eco31I | GGTCTC | 2 cut(s) | 3779, 5894 |
| Eco32I | GATATC | 2 cut(s) | 62, 4480 |
| Eco47I | GGWCC | 7 cut(s) | 1952, 2362, 2771, 3505, 3987, 4493, 5169 |
| Eco53kI | GAGCTC | 3 cut(s) | 145, 1309, 4441 |
| Eco57I | CTGAAG | 6 cut(s) | 699, 1592, 1620, 3882, 5436, 6908 |
| Eco72I | CACGTG | 1 cut(s) | 3691 |
| Eco88I | CYCGRG | 2 cut(s) | 1302, 1613 |
| EcoICRI | GAGCTC | 3 cut(s) | 145, 1309, 4441 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1671 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1952, 2771, 4493, 5764 |
| EcoRI | GAATTC | 2 cut(s) | 823, 1101 |
| EcoRV | GATATC | 2 cut(s) | 62, 4480 |
| EcoT14I | CCWWGG | 4 cut(s) | 151, 385, 866, 1647 |
| EcoT22I | ATGCAT | 2 cut(s) | 1224, 6547 |
| EcoT38I | GRGCYC | 4 cut(s) | 147, 402, 1311, 4443 |
| EgeI | GGCGCC | 1 cut(s) | 2164 |
| EheI | GGCGCC | 1 cut(s) | 2164 |
| ErhI | CCWWGG | 4 cut(s) | 151, 385, 866, 1647 |
| FaqI | GGGAC | 9 cut(s) | 1563, 1938, 2516, 3212, 3491, 3549, 3793, 3916, 4479 |
| FauI | CCCGC | 5 cut(s) | 1522, 3714, 4894, 5196, 6714 |
| FauNDI | CATATG | 3 cut(s) | 2175, 4666, 6547 |
| FbaI | TGATCA | 2 cut(s) | 3667, 6453 |
| FblI | GTMKAC | 1 cut(s) | 4188 |
| FriOI | GRGCYC | 4 cut(s) | 147, 402, 1311, 4443 |
| FspBI | CTAG | 9 cut(s) | 234, 653, 848, 867, 1106, 1353, 2658, 3399, 6680 |
| GlaI | GCGC | 5 cut(s) | 1150, 2164, 4702, 4817, 5100 |
| GsaI | CCCAGC | 2 cut(s) | 1464, 4201 |
| GsuI | CTGGAG | 2 cut(s) | 2016, 6326 |
| HaeII | RGCGCY | 1 cut(s) | 2166 |
| HaeIII | GGCC | 9 cut(s) | 223, 1908, 2059, 2435, 4196, 4729, 5283, 5766, 6736 |
| HapII | CCGG | 4 cut(s) | 4040, 4730, 4921, 6732 |
| HhaI | GCGC | 5 cut(s) | 1151, 2165, 4703, 4818, 5101 |
| Hin1I | GRCGYC | 2 cut(s) | 2000, 2163 |
| Hin6I | GCGC | 5 cut(s) | 1149, 2163, 4701, 4816, 5099 |
| HinP1I | GCGC | 5 cut(s) | 1149, 2163, 4701, 4816, 5099 |
| HincII | GTYRAC | 5 cut(s) | 356, 2563, 4926, 5350, 6661 |
| HindII | GTYRAC | 5 cut(s) | 356, 2563, 4926, 5350, 6661 |
| HindIII | AAGCTT | 1 cut(s) | 2541 |
| HpaI | GTTAAC | 2 cut(s) | 2563, 6661 |
| HpaII | CCGG | 4 cut(s) | 4040, 4730, 4921, 6732 |
| HpyCH4IV | ACGT | 6 cut(s) | 1552, 2000, 3690, 4061, 5983, 6439 |
| HpySE526I | ACGT | 6 cut(s) | 1552, 2000, 3690, 4061, 5983, 6439 |
| Hsp92I | GRCGYC | 2 cut(s) | 2000, 2163 |
| HspAI | GCGC | 5 cut(s) | 1149, 2163, 4701, 4816, 5099 |
| KasI | GGCGCC | 1 cut(s) | 2162 |
| KflI | GGGWCCC | 1 cut(s) | 1952 |
| KpnI | GGTACC | 2 cut(s) | 4664, 5818 |
| Ksp22I | TGATCA | 2 cut(s) | 3667, 6453 |
| KspAI | GTTAAC | 2 cut(s) | 2563, 6661 |
| LmnI | GCTCC | 6 cut(s) | 119, 1879, 2077, 3667, 4446, 6714 |
| LweI | GCATC | 9 cut(s) | 1209, 1227, 1262, 2216, 2395, 3162, 3717, 4879, 6930 |
| MabI | ACCWGGT | 3 cut(s) | 1699, 2834, 5817 |
| MaeI | CTAG | 9 cut(s) | 234, 653, 848, 867, 1106, 1353, 2658, 3399, 6680 |
| MaeII | ACGT | 6 cut(s) | 1552, 2000, 3690, 4061, 5983, 6439 |
| MbiI | CCGCTC | 1 cut(s) | 6709 |
| MfeI | CAATTG | 3 cut(s) | 345, 361, 4123 |
| MflI | RGATCY | 6 cut(s) | 588, 1121, 1676, 3957, 4216, 4906 |
| Mly113I | GGCGCC | 1 cut(s) | 2163 |
| MlyI | GAGTC | 9 cut(s) | 13, 361, 1270, 1625, 2469, 2648, 4610, 5983, 6833 |
| MmeI | TCCRAC | 5 cut(s) | 103, 241, 2217, 4468, 5948 |
| Mph1103I | ATGCAT | 2 cut(s) | 1224, 6547 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1608, 3767, 5544, 6522 |
| MspA1I | CMGCKG | 3 cut(s) | 5045, 6304, 6331 |
| MspCI | CTTAAG | 2 cut(s) | 3842, 5747 |
| MspI | CCGG | 4 cut(s) | 4040, 4730, 4921, 6732 |
| MunI | CAATTG | 3 cut(s) | 345, 361, 4123 |
| Mva1269I | GAATGC | 4 cut(s) | 3976, 4159, 4170, 4515 |
| NarI | GGCGCC | 1 cut(s) | 2163 |
| NciI | CCSGG | 2 cut(s) | 4041, 6733 |
| NcoI | CCATGG | 2 cut(s) | 151, 1647 |
| NdeI | CATATG | 3 cut(s) | 2175, 4666, 6547 |
| NsiI | ATGCAT | 2 cut(s) | 1224, 6547 |
| NspI | RCATGY | 7 cut(s) | 1808, 2084, 2264, 3144, 3407, 4597, 4880 |
| NspV | TTCGAA | 1 cut(s) | 1049 |
| OliI | CACNNNNGTG | 2 cut(s) | 1025, 4088 |
| PaeI | GCATGC | 1 cut(s) | 2084 |
| PaeR7I | CTCGAG | 2 cut(s) | 1302, 1613 |
| PaqCI | CACCTGC | 1 cut(s) | 2128 |
| PasI | CCCWGGG | 1 cut(s) | 4281 |
| PceI | AGGCCT | 2 cut(s) | 2059, 5283 |
| PciI | ACATGT | 2 cut(s) | 1804, 3403 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 941, 6830 |
| PctI | GAATGC | 4 cut(s) | 3976, 4159, 4170, 4515 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1608, 3767, 5544, 6522 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 373, 1826, 4287, 6926 |
| PfoI | TCCNGGA | 1 cut(s) | 2843 |
| Ple19I | CGATCG | 1 cut(s) | 6837 |
| PleI | GAGTC | 9 cut(s) | 13, 360, 1269, 1624, 2469, 2648, 4609, 5983, 6833 |
| PluTI | GGCGCC | 1 cut(s) | 2166 |
| PmaCI | CACGTG | 1 cut(s) | 3691 |
| PmlI | CACGTG | 1 cut(s) | 3691 |
| PpsI | GAGTC | 9 cut(s) | 13, 360, 1269, 1624, 2469, 2648, 4609, 5983, 6833 |
| Ppu21I | YACGTR | 2 cut(s) | 3691, 5984 |
| PpuMI | RGGWCCY | 3 cut(s) | 1952, 2771, 4493 |
| PscI | ACATGT | 2 cut(s) | 1804, 3403 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1805, 2658, 4491 |
| PshBI | ATTAAT | 2 cut(s) | 3165, 3546 |
| PsiI | TTATAA | 4 cut(s) | 630, 1941, 3755, 5837 |
| Psp124BI | GAGCTC | 3 cut(s) | 147, 1311, 4443 |
| Psp1406I | AACGTT | 2 cut(s) | 4061, 6439 |
| Psp5II | RGGWCCY | 3 cut(s) | 1952, 2771, 4493 |
| PspCI | CACGTG | 1 cut(s) | 3691 |
| PspFI | CCCAGC | 2 cut(s) | 1460, 4197 |
| PspPPI | RGGWCCY | 3 cut(s) | 1952, 2771, 4493 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2039, 4228, 5494 |
| PsuI | RGATCY | 6 cut(s) | 588, 1121, 1676, 3957, 4216, 4906 |
| PvuI | CGATCG | 1 cut(s) | 6837 |
| PvuII | CAGCTG | 3 cut(s) | 5045, 6304, 6331 |
| SacI | GAGCTC | 3 cut(s) | 147, 1311, 4443 |
| ScaI | AGTACT | 1 cut(s) | 2027 |
| SchI | GAGTC | 9 cut(s) | 13, 361, 1270, 1625, 2469, 2648, 4610, 5983, 6833 |
| SexAI | ACCWGGT | 3 cut(s) | 1699, 2834, 5817 |
| SfaNI | GCATC | 9 cut(s) | 1209, 1227, 1262, 2216, 2395, 3162, 3717, 4879, 6930 |
| SfcI | CTRYAG | 1 cut(s) | 1266 |
| SfoI | GGCGCC | 1 cut(s) | 2164 |
| Sfr274I | CTCGAG | 2 cut(s) | 1302, 1613 |
| SfuI | TTCGAA | 1 cut(s) | 1049 |
| SinI | GGWCC | 7 cut(s) | 1952, 2362, 2771, 3505, 3987, 4493, 5169 |
| SlaI | CTCGAG | 2 cut(s) | 1302, 1613 |
| SmlI | CTYRAG | 9 cut(s) | 327, 1258, 1302, 1613, 3244, 3782, 3842, 4598, 5747 |
| SmoI | CTYRAG | 9 cut(s) | 327, 1258, 1302, 1613, 3244, 3782, 3842, 4598, 5747 |
| SphI | GCATGC | 1 cut(s) | 2084 |
| SseBI | AGGCCT | 2 cut(s) | 2059, 5283 |
| SspDI | GGCGCC | 1 cut(s) | 2162 |
| SspI | AATATT | 1 cut(s) | 2638 |
| SspMI | CTAG | 9 cut(s) | 234, 653, 848, 867, 1106, 1353, 2658, 3399, 6680 |
| SstI | GAGCTC | 3 cut(s) | 147, 1311, 4443 |
| StuI | AGGCCT | 2 cut(s) | 2059, 5283 |
| StyI | CCWWGG | 4 cut(s) | 151, 385, 866, 1647 |
| TaiI | ACGT | 6 cut(s) | 1555, 2003, 3693, 4064, 5986, 6442 |
| TaqII | GACCGA | 1 cut(s) | 2350 |
| TatI | WGTACW | 5 cut(s) | 649, 882, 1521, 2025, 3685 |
| TspGWI | ACGGA | 7 cut(s) | 581, 2037, 3841, 4664, 5182, 6239, 6870 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 373, 1826, 4287, 6926 |
| Vha464I | CTTAAG | 2 cut(s) | 3842, 5747 |
| VneI | GTGCAC | 3 cut(s) | 916, 4748, 5192 |
| VpaK11BI | GGWCC | 7 cut(s) | 1952, 2362, 2771, 3505, 3987, 4493, 5169 |
| VspI | ATTAAT | 2 cut(s) | 3165, 3546 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1671 |
| XbaI | TCTAGA | 1 cut(s) | 3398 |
| XceI | RCATGY | 7 cut(s) | 1808, 2084, 2264, 3144, 3407, 4597, 4880 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 530, 2200, 2243 |
| XhoI | CTCGAG | 2 cut(s) | 1302, 1613 |
| XmaJI | CCTAGG | 1 cut(s) | 866 |
| XmiI | GTMKAC | 1 cut(s) | 4188 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1608, 3767, 5544, 6522 |
| XspI | CTAG | 9 cut(s) | 234, 653, 848, 867, 1106, 1353, 2658, 3399, 6680 |
| ZraI | GACGTC | 1 cut(s) | 2001 |
| ZrmI | AGTACT | 1 cut(s) | 2027 |
| Zsp2I | ATGCAT | 2 cut(s) | 1224, 6547 |