Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Reverse (-)

15036857 .. 15038143

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCATCAAATAGCACTGAGCCAGTAGAACTTGAACCATGCTCTTACAAAGAAGCCTTAAACATTCCAGTATGGAAACAAGCCATACAGGAGGAATATGATGCACTGATGAAGCAACAAACTTGGACTCTTATTCCCCTTCCTCCAGGTAAAAATCTTGTCTCTTGCAAATGGCTGTTTAAAACCTTCTCTCCAGTAGTTAGACACACTACTGTTAGACTTATCCTTGCCTATGCTGCTCGTTTTGGTTGGAATCTTCACCAGATGGATGTGAAGAATGCTTTCCTGCATGGCACACTGAATGAAGAAGTGTACATGTCTCAACCTGGTGGTTTTGAGACCTCAGTTGCATCTTCTCTTGTCTGCAAATTGCATAAGTCACTCTATGACCCTAGTCTCTTCGTGAAAGTCTCTGGTACCTCAAAGGTATATCTTCTCCTCTATGTTGATGATATCATCATCACTGGCAACAGTGAACTTCTTATTGCAGAAGTCAAGGCAGCTCTCCAAATTGAGTTTGATATGAAAGACCTTGGCAAACTCCATTTCTTCCTTGGTCTGGAAGTTAAGTATTTGAAGAATGGTGGTCTCTTTGTATCTCAGCACAAGTATGCAACTGATCTAGTTCACAAGGCTGGTCTTGATAATTGCCACACTCATCTTACACCTTGTTATTCTGGTATGAAGCTCCTCAAGGACAGTGGAAAACCACTTGATCATCATGATGCCACTCATTTCAGAAGCATTGTTGGATGTTTGCAATACTTAACCTTCACAAGACCTGATATTGCTTATAGTGTTAATTCTGTTTGCCAATTCATGCATTGTCCAACTGAAGATCATTTGATTGCTGCAACACGAATACTCAGATATGTAAAAGGCAGCATTGATCATGGACTCTATTTCAGGCAAGGTAACAATGAACATAAGTTGGTTAAATTGCAAGCTTACTGTGATGCCGACTGGGCTGGTGATCCAAACGATCGAAAATCTACCACTGGATTTGTAATACTACTTGATTCTGCTCCTATCTCATGGTGTAGCAAAAAGCAAGCTGCAGTATCTAGATCTTCAACTGAAGCTGAATACCGGAGTATGGCTGATACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

370

Amino Acids

41.64

Weight (kDa)

7.24

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	61 - 129	2.4e-21	Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2	PF07727	133 - 224	9.7e-19	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	968
AcuI	CTGAAG	2 cut(s)	855, 1098
AfaI	GTAC	2 cut(s)	314, 418
AfiI	CCNNNNNNNGG	2 cut(s)	559, 1096
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	35, 577, 1074
AjnI	CCWGG	2 cut(s)	145, 325
AluBI	AGCT	5 cut(s)	503, 688, 947, 1055, 1082
AluI	AGCT	5 cut(s)	503, 688, 947, 1055, 1082
Alw26I	GTCTC	6 cut(s)	166, 324, 332, 401, 415, 593
AlwI	GGATC	1 cut(s)	968
ApeKI	GCWGC	5 cut(s)	236, 500, 851, 882, 1055
Asp700I	GAANNNNTTC	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	251, 983
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	5 cut(s)	223, 512, 838, 894, 1042
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	147, 327
BclI	TGATCA	2 cut(s)	715, 889
BcoDI	GTCTC	6 cut(s)	166, 324, 332, 401, 415, 593
BfaI	CTAG	3 cut(s)	393, 623, 1065
BfmI	CTRYAG	1 cut(s)	1056
BglI	GCCNNNNNGGC	1 cut(s)	965
BglII	AGATCT	1 cut(s)	1067
BisI	GCNGC	5 cut(s)	237, 501, 852, 883, 1056
BlsI	GCNGC	5 cut(s)	238, 502, 853, 884, 1057
Bme1390I	CCNGG	2 cut(s)	147, 327
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	147, 327
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	4 cut(s)	91, 359, 715, 946
BmuI	ACTGGG	1 cut(s)	973
BoxI	GACNNNNGTC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	129, 177
BpuEI	CTTGAG	1 cut(s)	677
BsaI	GGTCTC	2 cut(s)	332, 593
BsaJI	CCNNGG	2 cut(s)	532, 553
BsaWI	WCCGGW	1 cut(s)	1089
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 1096
Bse1I	ACTGG	6 cut(s)	23, 68, 194, 469, 968, 1003
BseBI	CCWGG	2 cut(s)	147, 327
BseDI	CCNNGG	2 cut(s)	532, 553
BseGI	GGATG	2 cut(s)	274, 758
BseLI	CCNNNNNNNGG	2 cut(s)	559, 1096
BseMII	CTCAG	4 cut(s)	9, 357, 614, 880
BseNI	ACTGG	6 cut(s)	23, 68, 194, 469, 968, 1003
BseRI	GAGGAG	2 cut(s)	428, 680
BseXI	GCAGC	5 cut(s)	223, 512, 838, 894, 1042
Bsh1285I	CGRYCG	1 cut(s)	985
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	1090
BslI	CCNNNNNNNGG	2 cut(s)	559, 1096
BsmAI	GTCTC	6 cut(s)	166, 324, 332, 401, 415, 593
BsmI	GAATGC	1 cut(s)	283
Bso31I	GGTCTC	2 cut(s)	332, 593
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
BspCNI	CTCAG	4 cut(s)	10, 356, 613, 879
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	1 cut(s)	968
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	332, 593
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	6 cut(s)	23, 68, 194, 469, 968, 1003
BssECI	CCNNGG	2 cut(s)	532, 553
BssMI	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
BssT1I	CCWWGG	2 cut(s)	532, 553
Bst2UI	CCWGG	2 cut(s)	147, 327
Bst4CI	ACNGT	4 cut(s)	214, 473, 701, 953
Bst6I	CTCTTC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	945, 1053
BstDEI	CTNAG	4 cut(s)	18, 343, 600, 866
BstF5I	GGATG	2 cut(s)	274, 758
BstKTI	GATC	7 cut(s)	622, 718, 841, 892, 976, 985, 1070
BstMAI	GTCTC	6 cut(s)	166, 324, 332, 401, 415, 593
BstMBI	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
BstMCI	CGRYCG	1 cut(s)	985
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 965
BstNI	CCWGG	2 cut(s)	147, 327
BstNSI	RCATGY	1 cut(s)	319
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	145, 325
BstSFI	CTRYAG	1 cut(s)	1056
BstV1I	GCAGC	5 cut(s)	223, 512, 838, 894, 1042
BstX2I	RGATCY	1 cut(s)	1067
BstYI	RGATCY	1 cut(s)	1067
BtsCI	GGATG	2 cut(s)	274, 758
BtsIMutI	CAGTG	7 cut(s)	15, 104, 296, 462, 478, 706, 996
Cac8I	GCNNGC	2 cut(s)	945, 1053
CciI	TCATGA	1 cut(s)	721
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	313, 417
CspCI	CAANNNNNGTGG	4 cut(s)	682, 717, 985, 1020
CviAII	CATG	7 cut(s)	39, 290, 316, 722, 820, 893, 1035
CviQI	GTAC	2 cut(s)	313, 417
DdeI	CTNAG	4 cut(s)	18, 343, 600, 866
DpnI	GATC	7 cut(s)	621, 717, 840, 891, 975, 984, 1069
DpnII	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
DraI	TTTAAA	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	532, 553
Eco31I	GGTCTC	2 cut(s)	332, 593
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	855, 1098
EcoRII	CCWGG	2 cut(s)	145, 325
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	532, 553
EcoT22I	ATGCAT	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	532, 553
FaeI	CATG	7 cut(s)	42, 293, 319, 725, 823, 896, 1038
FatI	CATG	7 cut(s)	38, 289, 315, 721, 819, 892, 1034
FbaI	TGATCA	2 cut(s)	715, 889
Fnu4HI	GCNGC	5 cut(s)	237, 501, 852, 883, 1056
FokI	GGATG	2 cut(s)	281, 765
Fsp4HI	GCNGC	5 cut(s)	237, 501, 852, 883, 1056
FspBI	CTAG	3 cut(s)	393, 623, 1065
GluI	GCNGC	5 cut(s)	237, 501, 852, 883, 1056
GsuI	CTGGAG	2 cut(s)	129, 177
HapII	CCGG	1 cut(s)	1090
Hin1II	CATG	7 cut(s)	42, 293, 319, 725, 823, 896, 1038
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	4 cut(s)	127, 253, 897, 1019
HpaII	CCGG	1 cut(s)	1090
HphI	GGTGA	2 cut(s)	251, 983
Hpy166II	GTNNAC	3 cut(s)	313, 476, 628
Hpy188I	TCNGA	2 cut(s)	740, 869
Hpy188III	TCNNGA	5 cut(s)	403, 560, 641, 722, 1065
Hpy8I	GTNNAC	3 cut(s)	313, 476, 628
HpyAV	CCTTC	3 cut(s)	149, 196, 781
HpyCH4III	ACNGT	4 cut(s)	214, 473, 701, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 965
HpyF3I	CTNAG	4 cut(s)	18, 343, 600, 866
Hsp92II	CATG	7 cut(s)	42, 293, 319, 725, 823, 896, 1038
KpnI	GGTACC	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	715, 889
Kzo9I	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
LmnI	GCTCC	2 cut(s)	693, 1030
Lsp1109I	GCAGC	5 cut(s)	223, 512, 838, 894, 1042
LweI	GCATC	4 cut(s)	91, 359, 715, 946
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	3 cut(s)	393, 623, 1065
MaeIII	GTNAC	2 cut(s)	378, 914
MalI	GATC	7 cut(s)	621, 717, 840, 891, 975, 984, 1069
MboI	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
MflI	RGATCY	1 cut(s)	1067
MluCI	AATT	6 cut(s)	368, 510, 646, 802, 815, 938
MlyI	GAGTC	2 cut(s)	121, 891
MmeI	TCCRAC	3 cut(s)	230, 730, 854
MnlI	CCTC	6 cut(s)	85, 153, 352, 430, 449, 701
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	6 cut(s)	59, 180, 567, 767, 801, 936
MslI	CAYNNNNRTG	2 cut(s)	609, 723
MspI	CCGG	1 cut(s)	1090
MspR9I	CCNGG	2 cut(s)	147, 327
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	147, 327
MwoI	GCNNNNNNNGC	2 cut(s)	236, 965
NdeII	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
NlaIII	CATG	7 cut(s)	42, 293, 319, 725, 823, 896, 1038
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	319
PagI	TCATGA	1 cut(s)	721
PciI	ACATGT	1 cut(s)	315
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	253, 1019
PkrI	GCNGC	5 cut(s)	238, 502, 853, 884, 1057
Ple19I	CGATCG	1 cut(s)	985
PleI	GAGTC	2 cut(s)	121, 891
PpsI	GAGTC	2 cut(s)	121, 891
PscI	ACATGT	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	145, 325
PspGI	CCWGG	2 cut(s)	145, 325
PspN4I	GGNNCC	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	1067
PvuI	CGATCG	1 cut(s)	985
RsaI	GTAC	2 cut(s)	314, 418
RsaNI	GTAC	2 cut(s)	313, 417
RseI	CAYNNNNRTG	2 cut(s)	609, 723
SaqAI	TTAA	6 cut(s)	59, 180, 567, 767, 801, 936
SatI	GCNGC	5 cut(s)	237, 501, 852, 883, 1056
Sau3AI	GATC	7 cut(s)	619, 715, 838, 889, 973, 982, 1067
SchI	GAGTC	2 cut(s)	121, 891
ScrFI	CCNGG	2 cut(s)	147, 327
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	4 cut(s)	91, 359, 715, 946
SfcI	CTRYAG	1 cut(s)	1056
SmiMI	CAYNNNNRTG	2 cut(s)	609, 723
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	6 cut(s)	368, 510, 646, 802, 815, 938
SspMI	CTAG	3 cut(s)	393, 623, 1065
StyD4I	CCNGG	2 cut(s)	145, 325
StyI	CCWWGG	2 cut(s)	532, 553
TaaI	ACNGT	4 cut(s)	214, 473, 701, 953
TaqI	TCGA	1 cut(s)	985
TasI	AATT	6 cut(s)	368, 510, 646, 802, 815, 938
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	253, 1019
Tru1I	TTAA	6 cut(s)	59, 180, 567, 767, 801, 936
Tru9I	TTAA	6 cut(s)	59, 180, 567, 767, 801, 936
TscAI	CASTG	7 cut(s)	22, 111, 303, 469, 478, 706, 1003
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	5 cut(s)	236, 500, 851, 882, 1055
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	6 cut(s)	125, 318, 539, 698, 808, 936
TspRI	CASTG	7 cut(s)	22, 111, 303, 469, 478, 706, 1003
XbaI	TCTAGA	1 cut(s)	1064
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	3 cut(s)	393, 623, 1065
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.