Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

23178595 .. 23179149

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19532.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCTCAAGGTGTTTTCTTCAAGAGAGGTTATTCTGCAACCAATTTTTCCACATCAGCTCTTGCTCTTAAAGCCTTTTGTGATGTAGACTGGGCAGGTGATCCTAATGATAGGAAATCTACTACTGGTTTTGTGATTTTACTCAATGATACTCCTGTGTCCTGGTGTAGTAAAAAGCAACGTGCAGTGTCTAGATCCTCCACTGAAGCTGAGTATAGAACTTTAGCATTGGCTACTAATCCAGTATATCATTCAAAGTTAAAGCACATTGAAGTGGATGTGCATTTCACTCGCAATCAGGTGAAGGCTGGTTTTCTTAAGCTGCAGTTTGTTCCTTCTAAACATCAACTTGCAGATTTGTTTACCAAAGGCTTGTGCTCTCCACAACATCAGTTCTTATGTTCCAGCTTGATGCTTCACAATCACCATCAAGCTGAGGGAGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

150

Amino Acids

16.63

Weight (kDa)

9.2

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	2 cut(s)	95, 189
AcuI	CTGAAG	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	22, 255, 272
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	59, 209, 322, 408, 434
AluI	AGCT	5 cut(s)	59, 209, 322, 408, 434
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	95, 189
ApeKI	GCWGC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	110, 313, 416
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	323
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	95, 130, 242
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	283, 449
BseMII	CTCAG	2 cut(s)	201, 426
BseNI	ACTGG	3 cut(s)	95, 130, 242
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	100, 194
BspCNI	CTCAG	2 cut(s)	202, 427
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	95, 189
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	95, 130, 242
BssMI	GATC	2 cut(s)	100, 194
Bst2UI	CCWGG	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	210, 435
BstF5I	GGATG	2 cut(s)	283, 449
BstKTI	GATC	2 cut(s)	103, 197
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	100, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	283, 449
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 201
BveI	ACCTGC	1 cut(s)	86
CviJI	RGCY	9 cut(s)	59, 74, 209, 233, 308, 322, 372, 408, 434
CviKI_1	RGCY	9 cut(s)	59, 74, 209, 233, 308, 322, 372, 408, 434
DdeI	CTNAG	2 cut(s)	210, 435
DpnI	GATC	2 cut(s)	102, 196
DpnII	GATC	2 cut(s)	100, 194
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	161
FaiI	YATR	3 cut(s)	216, 247, 400
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	323
HphI	GGTGA	3 cut(s)	110, 313, 416
Hpy166II	GTNNAC	2 cut(s)	88, 363
Hpy188III	TCNNGA	2 cut(s)	22, 192
Hpy8I	GTNNAC	2 cut(s)	88, 363
HpyAV	CCTTC	2 cut(s)	298, 345
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	38, 185, 283, 325, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	210, 435
HpySE526I	ACGT	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	100, 194
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	181
MalI	GATC	2 cut(s)	102, 196
MboI	GATC	2 cut(s)	100, 194
MboII	GAAGA	1 cut(s)	10
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	4 cut(s)	20, 208, 430, 434
MseI	TTAA	3 cut(s)	69, 260, 318
MslI	CAYNNNNRTG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	100, 194
PaqCI	CACCTGC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	69, 260, 318
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	2 cut(s)	100, 194
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	6, 317
SmoI	CTYRAG	2 cut(s)	6, 317
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	184
TasI	AATT	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	69, 260, 318
Tru9I	TTAA	3 cut(s)	69, 260, 318
TscAI	CASTG	2 cut(s)	192, 208
TseI	GCWGC	1 cut(s)	322
TspRI	CASTG	2 cut(s)	192, 208
Vha464I	CTTAAG	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.