Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

6425820 .. 6429502

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGATGAGTAGCTCCAGTATCTCCAATCCAGATATCATCACTTTCATTGATGATTGTACCAGATTCTTGTGGTTATATCCACTTACTAATAAATCTGATGCTTATGTTACATTTGTTAAGTTTTATCAGTTTGTTCATACACAATTTCATGGTGTTATTCAATCTATTCAAACTGATGGAGGTGGAGAATATAATAGTAATGCATTTAAGAATTATCTTTCCTCTCATGGTATTCTCCATCTCATTACTTGTCCATATACACCTCAACAAAACGGTGTTGCTGAGAGAAAGAATCGACATGTTGTTGAAACTGCCATAACTCTCATGTCAGCTGCTAGCATTCCTAAACCTTTTTGGTTTCATGCAGTAGCTCATTCTGCATTTCTCATAAATAGGATGCCTTGTCGTTTTTTGGATATGTCTTCTCCTTATATCAAATTCTTTGGTTCTCCTCCCGATCTCTCATCTTTGAGAATTTTTGGTTCAGCCTGCTATCCTTATCTTAGGCCTTATGCTCATGACAAGCTTGATCCAAGGTCCTCTCAGTGTGTCTTTCTTGGCTATGCCTTAGGATTTAAAGGGGTGTTCTGCTATTGTCCTTCTAAAAATAAATTATTCATGTGTCGACATGTTGTTCATGATGAAACAATTTTTCCTTTTTCTCTGTCTCTTTCTCTTCCATCTTCTCCTTCCCCAATGTTGAGACCTGGTCCTTTCTCTGGTTCTCCTTCTGCAGTGGTCCCTGCCTCAGTTGAGAGGGGGAATACTAGTAATGTCACTACTAGTTCTGATATTAGTAATGTTGCAAATCATGATGGAAGTGTTAGTACTGCAGTTAATTGTCAGAATCAAAGTGAGAATCTAAATTTTGGAGTTGTAAATGGTGTTGATGGAGGAAACGGTTATACTGGAGGTGTTGATGGTGGTTTTGATGAAGGATGTGCTACAGGTGGTCATGATGTTCCTATTGGTACTAATGATAGTTTACTTGCTTCTATTTTGCCTCAAGAAATTCAGTTTATCAATGATTCTGCTACTTCCTATAATAACCACTCCATGTTGACCCGTGCAAAGAATGGGATTTTTAAGAAGAAGAATTTTGATGAGTTCTGCGCTTATTCTTGTATTGCACAACAAAATGTTCTTGATGAGTTGTCATTTTTCAGTGGCTTAACTTCTGTGCTTGATATCACTGATGCTGTTGAGCCTAAGCATTTTAAAGCTGCTGTTGGTCATACTGAATGGGATACTGCAATGAATGAAGAAGTAGAAGCTTTACAGAAGAAAGGAACTTGGATTTTAGTTCTAATGCCAAAAGGGAAAAACATTGTTGGAAGGAAGTGGGTGTATAAGATAAAGAGAAATCCTGATGGAAGTGTGTCTAGATACAAAGCAAGACTTGTTGCTCAAGGATACAGTCAAGAAAAAGGTCTGGACTATGATGAGACTTTTAGTCCTGTTGTGAGGCATAGTACTGTTAGGATTGTTCTTGCCCTTGCTGCTATGTTCAAATGGGAGTTGAGACAACTTGATGTAAAAAATGCTTTTTTACATGGTGACCTGAAAGAGGAGGTTTATATGCAGCAGCCTATGGGTTTTGTTGATCCTAATTTCCCTAATCATGTTTGCTTGTTACAAAAGTCTCTCTATGGTTTAAAGCAGGCGCCTCGAGCATGGAATGAGAAGTTTACTACTTTCTTACCTGCTATTGGATTTACTTTCTCACATTCGGATCCAAGTCTGTTTGTGAAATATACTGAGTTTGGTATGGTTTGTTTGTTACTGTATGTGGATGATATTGTGATTACAGGTTCTGATAAAAAGGGAATTGATCAAGTGGTTCATGAACTCAATGAAGTTTTTGATATGAAAGATCTTGGTTGTCTTTCTTATTTTTTGGGAATAGAAGTTCAGTATAATCACAAGGGTATTTTTCTGAGTCAAGAAAAATATGCAAAAGACTTGTTGTCTAAGGTAGGCCTTGATACCTGTAGAGAGTGTAACACACCATGTTTGCCACATATGCAGATGCTTGCAACAGAAGGCATCCCTTTGTCTAATCCTACTCAGTATAGGAGTATTGTTGGAGGGTTGCAGTACTTAACTTTCACAAGACCTGACATTGCTTTCTCTGTCAATACAGTGTGCCAGTTCATGTCCTCACCAACTGATGTTCACTATGCTGCCGTAAAAAGAATTTTGAGATATTTGCAGGGCACTTTGTCTAAAGGACTGTTCTACAAGTATGGAACTGGAAGAAGTCATGTTACTGCATATTGTGATGCCGATTGGGCTGGAGAGGTGAATCATAGAAGATCAACAACAGGTTTTATTGTTTATCTAGGTGTGTGTCCAGTTTCATGGCAGTCAAAGAAACAAGGTTTTGTTTCTAGAAGTTCCACAGAAGCTGAATACAGGTCCCTAGCTAATACCGCTGCTGAAATTTCCTGGATTCGACATGTTTTGTGTGATTTGAAGGTCAGAATTCCCTCTCCTCCACTTCTGAAATGTGACAACTTATCTGTTCTTGCATTATGTTCCAATCCAGTATTCCATTCTCGGATTAAACACTTGGATAATGATTTTCACTTTGTGAGAGAAAGAGTTCAGAGACAAGATCTGCTGCTTGAATATGTTCCAACTGATTCTCAGACTGCAGATATTTTTACAAAGGGACTTCACAGTCCAAGCTTCAAGAAACATGCTTCCAATCTCAGTGTGCTGTCCCCTACTGAGATTGAGGGGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

918

Amino Acids

102.33

Weight (kDa)

7.53

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
rve	PF00665	12 - 88	1.2e-09	Integrase core domain
SH3_retrovirus	PF25597	162 - 222	2.7e-17	Retroviral polymerase SH3-like domain
RVT_2	PF07727	431 - 672	1.3e-75	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2682
Acc36I	ACCTGC	1 cut(s)	1711
AccB1I	GGYRCC	1 cut(s)	1663
AccI	GTMKAC	1 cut(s)	625
AciI	CCGC	1 cut(s)	2433
AclWI	GGATC	4 cut(s)	524, 1598, 1727, 1740
AcsI	RAATTY	8 cut(s)	437, 474, 865, 1011, 1096, 2196, 2442, 2484
AcyI	GRCGYC	1 cut(s)	1664
AdeI	CACNNNGTG	1 cut(s)	2593
AfaI	GTAC	5 cut(s)	58, 829, 973, 1474, 2099
AfiI	CCNNNNNNNGG	3 cut(s)	719, 1567, 1709
AflIII	ACRYGT	3 cut(s)	298, 628, 2458
AgsI	TTSAA	7 cut(s)	161, 170, 308, 1510, 2476, 2630, 2695
AhdI	GACNNNNNGTC	2 cut(s)	1452, 1966
AhlI	ACTAGT	2 cut(s)	767, 782
AjnI	CCWGG	2 cut(s)	706, 2447
AjuI	GAANNNNNNNTTGG	2 cut(s)	2534, 2566
AloI	GAACNNNNNNTCC	2 cut(s)	1893, 1925
AluBI	AGCT	9 cut(s)	12, 332, 371, 526, 1223, 1274, 2408, 2426, 2691
AluI	AGCT	9 cut(s)	12, 332, 371, 526, 1223, 1274, 2408, 2426, 2691
Alw26I	GTCTC	6 cut(s)	672, 697, 1439, 1516, 1647, 2605
AlwI	GGATC	4 cut(s)	524, 1598, 1727, 1740
AlwNI	CAGNNNCTG	2 cut(s)	1814, 2408
Ama87I	CYCGRG	1 cut(s)	1668
AoxI	GGCC	2 cut(s)	506, 1978
ApeKI	GCWGC	8 cut(s)	332, 1223, 1499, 1582, 1585, 2183, 2435, 2623
ApoI	RAATTY	8 cut(s)	437, 474, 865, 1011, 1096, 2196, 2442, 2484
Asp700I	GAANNNNTTC	2 cut(s)	2604, 2634
AspLEI	GCGC	2 cut(s)	1115, 1666
AspS9I	GGNCC	4 cut(s)	537, 710, 739, 2418
AsuHPI	GGTGA	3 cut(s)	1568, 2154, 2314
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	1668
AvaII	GGWCC	4 cut(s)	537, 710, 739, 2418
AxyI	CCTNAGG	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	2219
BamHI	GGATCC	1 cut(s)	1732
BanI	GGYRCC	1 cut(s)	1663
BarI	GAAGNNNNNNTAC	4 cut(s)	811, 843, 2251, 2283
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	8 cut(s)	319, 1210, 1486, 1594, 1597, 2170, 2422, 2610
BccI	CCATC	7 cut(s)	170, 246, 688, 809, 884, 914, 1364
BceAI	ACGGC	1 cut(s)	2171
BcgI	CGANNNNNNTGC	2 cut(s)	1649, 1683
BciT130I	CCWGG	2 cut(s)	708, 2449
BciVI	GTATCC	2 cut(s)	1240, 1406
BclI	TGATCA	1 cut(s)	1831
BcoDI	GTCTC	6 cut(s)	672, 697, 1439, 1516, 1647, 2605
BcuI	ACTAGT	2 cut(s)	767, 782
BfaI	CTAG	7 cut(s)	336, 768, 783, 1383, 2342, 2391, 2423
BfmI	CTRYAG	5 cut(s)	732, 831, 945, 1990, 2655
BfoI	RGCGCY	1 cut(s)	1667
BfuAI	ACCTGC	1 cut(s)	1711
BfuI	GTATCC	2 cut(s)	1240, 1406
BglI	GCCNNNNNGGC	1 cut(s)	2291
BglII	AGATCT	2 cut(s)	1873, 2617
BisI	GCNGC	8 cut(s)	333, 1224, 1500, 1583, 1586, 2184, 2436, 2624
BlsI	GCNGC	8 cut(s)	334, 1225, 1501, 1584, 1587, 2185, 2437, 2625
BmcAI	AGTACT	3 cut(s)	829, 1474, 2099
Bme1390I	CCNGG	2 cut(s)	708, 2449
Bme18I	GGWCC	4 cut(s)	537, 710, 739, 2418
BmeRI	GACNNNNNGTC	2 cut(s)	1452, 1966
BmeT110I	CYCGRG	1 cut(s)	1668
BmgT120I	GGNCC	4 cut(s)	537, 710, 739, 2418
BmiI	GGNNCC	4 cut(s)	741, 1665, 1734, 2420
BmrFI	CCNGG	2 cut(s)	708, 2449
BmsI	GCATC	6 cut(s)	88, 387, 1186, 2019, 2055, 2272
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	2 cut(s)	930, 2316
Bpu10I	CCTNAGC	1 cut(s)	1209
BpuEI	CTTGAG	2 cut(s)	990, 1392
BsaHI	GRCGYC	1 cut(s)	1664
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	3 cut(s)	719, 1567, 1709
Bse1I	ACTGG	6 cut(s)	15, 913, 2149, 2257, 2354, 2546
Bse21I	CCTNAGG	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	1260, 2121
BseBI	CCWGG	2 cut(s)	708, 2449
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	4 cut(s)	402, 944, 1798, 2046
BseLI	CCNNNNNNNGG	3 cut(s)	719, 1567, 1709
BseMI	GCAATG	2 cut(s)	1260, 2121
BseMII	CTCAG	9 cut(s)	273, 557, 762, 1749, 1928, 2081, 2663, 2724, 2728
BseNI	ACTGG	6 cut(s)	15, 913, 2149, 2257, 2354, 2546
BseRI	GAGGAG	3 cut(s)	441, 1583, 2484
BseSI	GKGCMC	1 cut(s)	2219
BseXI	GCAGC	8 cut(s)	319, 1210, 1486, 1594, 1597, 2170, 2422, 2610
BshFI	GGCC	2 cut(s)	508, 1980
BshNI	GGYRCC	1 cut(s)	1663
BsiHKCI	CYCGRG	1 cut(s)	1668
BslFI	GGGAC	4 cut(s)	725, 2404, 2688, 2710
BslI	CCNNNNNNNGG	3 cut(s)	719, 1567, 1709
BsmAI	GTCTC	6 cut(s)	672, 697, 1439, 1516, 1647, 2605
BsmFI	GGGAC	4 cut(s)	725, 2404, 2688, 2710
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	508, 1980
Bso31I	GGTCTC	1 cut(s)	697
BsoBI	CYCGRG	1 cut(s)	1668
Bsp1286I	GDGCHC	1 cut(s)	2219
Bsp143I	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
BspACI	CCGC	1 cut(s)	2433
BspANI	GGCC	2 cut(s)	508, 1980
BspCNI	CTCAG	9 cut(s)	274, 556, 761, 1750, 1929, 2080, 2662, 2725, 2727
BspHI	TCATGA	5 cut(s)	517, 637, 811, 955, 1843
BspLI	GGNNCC	4 cut(s)	741, 1665, 1734, 2420
BspMAI	CTGCAG	3 cut(s)	736, 835, 2659
BspMI	ACCTGC	1 cut(s)	1711
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	4 cut(s)	524, 1598, 1727, 1740
BspT107I	GGYRCC	1 cut(s)	1663
BspTNI	GGTCTC	1 cut(s)	697
BsrDI	GCAATG	2 cut(s)	1260, 2121
BsrI	ACTGG	6 cut(s)	15, 913, 2149, 2257, 2354, 2546
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
BssNI	GRCGYC	1 cut(s)	1664
BssT1I	CCWWGG	1 cut(s)	533
Bst2UI	CCWGG	2 cut(s)	708, 2449
Bst4CI	ACNGT	8 cut(s)	275, 902, 1418, 1477, 1785, 2143, 2235, 2684
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	1664
BstC8I	GCNNGC	4 cut(s)	337, 490, 1662, 2034
BstEII	GGTNACC	1 cut(s)	1556
BstENI	CCTNNNNNAGG	1 cut(s)	1565
BstF5I	GGATG	4 cut(s)	402, 944, 1798, 2046
BstH2I	RGCGCY	1 cut(s)	1667
BstHHI	GCGC	2 cut(s)	1115, 1666
BstKTI	GATC	8 cut(s)	460, 532, 1606, 1735, 1834, 1876, 2318, 2620
BstMAI	GTCTC	6 cut(s)	672, 697, 1439, 1516, 1647, 2605
BstMBI	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
BstMWI	GCNNNNNNNGC	6 cut(s)	377, 1499, 1670, 2023, 2291, 2432
BstNI	CCWGG	2 cut(s)	708, 2449
BstNSI	RCATGY	4 cut(s)	302, 632, 2462, 2705
BstPI	GGTNACC	1 cut(s)	1556
BstSCI	CCNGG	2 cut(s)	706, 2447
BstSFI	CTRYAG	5 cut(s)	732, 831, 945, 1990, 2655
BstSLI	GKGCMC	1 cut(s)	2219
BstV1I	GCAGC	8 cut(s)	319, 1210, 1486, 1594, 1597, 2170, 2422, 2610
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	3 cut(s)	1732, 1873, 2617
BstXI	CCANNNNNNTGG	1 cut(s)	2361
BstYI	RGATCY	3 cut(s)	1732, 1873, 2617
Bsu36I	CCTNAGG	1 cut(s)	568
BsuI	GTATCC	2 cut(s)	1240, 1406
BsuRI	GGCC	2 cut(s)	508, 1980
BtsCI	GGATG	4 cut(s)	402, 944, 1798, 2046
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	6 cut(s)	551, 741, 1171, 1191, 2148, 2722
BveI	ACCTGC	1 cut(s)	1711
Cac8I	GCNNGC	4 cut(s)	337, 490, 1662, 2034
CaiI	CAGNNNCTG	2 cut(s)	1814, 2408
CciI	TCATGA	5 cut(s)	517, 637, 811, 955, 1843
CfoI	GCGC	2 cut(s)	1115, 1666
Cfr13I	GGNCC	4 cut(s)	537, 710, 739, 2418
CsiI	ACCWGGT	1 cut(s)	706
Csp6I	GTAC	5 cut(s)	57, 828, 972, 1473, 2098
CviQI	GTAC	5 cut(s)	57, 828, 972, 1473, 2098
DinI	GGCGCC	1 cut(s)	1665
DpnI	GATC	8 cut(s)	459, 531, 1605, 1734, 1833, 1875, 2317, 2619
DpnII	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
DraI	TTTAAA	3 cut(s)	577, 1219, 1656
DraIII	CACNNNGTG	1 cut(s)	2593
DrdI	GACNNNNNNGTC	1 cut(s)	2682
DriI	GACNNNNNGTC	2 cut(s)	1452, 1966
DseDI	GACNNNNNNGTC	1 cut(s)	2682
Eam1104I	CTCTTC	1 cut(s)	681
Eam1105I	GACNNNNNGTC	2 cut(s)	1452, 1966
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	533
Eco147I	AGGCCT	2 cut(s)	508, 1980
Eco31I	GGTCTC	1 cut(s)	697
Eco32I	GATATC	2 cut(s)	34, 1189
Eco47I	GGWCC	4 cut(s)	537, 710, 739, 2418
Eco81I	CCTNAGG	1 cut(s)	568
Eco88I	CYCGRG	1 cut(s)	1668
Eco91I	GGTNACC	1 cut(s)	1556
EcoNI	CCTNNNNNAGG	1 cut(s)	1565
EcoO109I	RGGNCCY	2 cut(s)	537, 2418
EcoO65I	GGTNACC	1 cut(s)	1556
EcoRI	GAATTC	1 cut(s)	2484
EcoRII	CCWGG	2 cut(s)	706, 2447
EcoRV	GATATC	2 cut(s)	34, 1189
EcoT14I	CCWWGG	1 cut(s)	533
EcoT22I	ATGCAT	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	1665
EheI	GGCGCC	1 cut(s)	1665
ErhI	CCWWGG	1 cut(s)	533
FalI	AAGNNNNNCTT	2 cut(s)	1383, 1415
FaqI	GGGAC	4 cut(s)	725, 2404, 2688, 2710
FauNDI	CATATG	1 cut(s)	2022
FbaI	TGATCA	1 cut(s)	1831
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	8 cut(s)	333, 1224, 1500, 1583, 1586, 2184, 2436, 2624
FokI	GGATG	4 cut(s)	409, 951, 1805, 2033
Fsp4HI	GCNGC	8 cut(s)	333, 1224, 1500, 1583, 1586, 2184, 2436, 2624
FspBI	CTAG	7 cut(s)	336, 768, 783, 1383, 2342, 2391, 2423
GlaI	GCGC	2 cut(s)	1114, 1665
GluI	GCNGC	8 cut(s)	333, 1224, 1500, 1583, 1586, 2184, 2436, 2624
GsuI	CTGGAG	2 cut(s)	930, 2316
HaeII	RGCGCY	1 cut(s)	1667
HaeIII	GGCC	2 cut(s)	508, 1980
HhaI	GCGC	2 cut(s)	1115, 1666
Hin1I	GRCGYC	1 cut(s)	1664
Hin6I	GCGC	2 cut(s)	1113, 1664
HinP1I	GCGC	2 cut(s)	1113, 1664
HincII	GTYRAC	2 cut(s)	626, 1062
HindII	GTYRAC	2 cut(s)	626, 1062
HindIII	AAGCTT	3 cut(s)	524, 1272, 2689
HinfI	GANTC	9 cut(s)	63, 292, 847, 859, 1028, 1939, 2305, 2452, 2645
HphI	GGTGA	3 cut(s)	1568, 2154, 2314
Hpy166II	GTNNAC	5 cut(s)	626, 986, 1062, 1689, 2176
Hpy8I	GTNNAC	5 cut(s)	626, 986, 1062, 1689, 2176
HpyAV	CCTTC	7 cut(s)	609, 699, 738, 929, 1329, 2036, 2470
HpyCH4III	ACNGT	8 cut(s)	275, 902, 1418, 1477, 1785, 2143, 2235, 2684
HpyF10VI	GCNNNNNNNGC	6 cut(s)	377, 1499, 1670, 2023, 2291, 2432
Hsp92I	GRCGYC	1 cut(s)	1664
HspAI	GCGC	2 cut(s)	1113, 1664
KasI	GGCGCC	1 cut(s)	1663
Ksp22I	TGATCA	1 cut(s)	1831
Kzo9I	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	8 cut(s)	319, 1210, 1486, 1594, 1597, 2170, 2422, 2610
LweI	GCATC	6 cut(s)	88, 387, 1186, 2019, 2055, 2272
MabI	ACCWGGT	1 cut(s)	706
MaeI	CTAG	7 cut(s)	336, 768, 783, 1383, 2342, 2391, 2423
MaeIII	GTNAC	8 cut(s)	106, 775, 1556, 1632, 1779, 2000, 2266, 2510
MalI	GATC	8 cut(s)	459, 531, 1605, 1734, 1833, 1875, 2317, 2619
MboI	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
MboII	GAAGA	9 cut(s)	414, 668, 675, 1102, 1105, 1274, 1294, 2268, 2325
MflI	RGATCY	3 cut(s)	1732, 1873, 2617
MhlI	GDGCHC	1 cut(s)	2219
Mly113I	GGCGCC	1 cut(s)	1664
MlyI	GAGTC	1 cut(s)	1948
MmeI	TCCRAC	3 cut(s)	1312, 2065, 2663
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	2 cut(s)	2604, 2634
MspA1I	CMGCKG	2 cut(s)	332, 2435
MspR9I	CCNGG	2 cut(s)	708, 2449
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	708, 2449
MwoI	GCNNNNNNNGC	6 cut(s)	377, 1499, 1670, 2023, 2291, 2432
NarI	GGCGCC	1 cut(s)	1664
NdeI	CATATG	1 cut(s)	2022
NdeII	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
NheI	GCTAGC	1 cut(s)	335
NlaIV	GGNNCC	4 cut(s)	741, 1665, 1734, 2420
NmuCI	GTSAC	3 cut(s)	775, 1556, 2510
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	4 cut(s)	302, 632, 2462, 2705
PaeR7I	CTCGAG	1 cut(s)	1668
PagI	TCATGA	5 cut(s)	517, 637, 811, 955, 1843
PceI	AGGCCT	2 cut(s)	508, 1980
PciI	ACATGT	3 cut(s)	298, 628, 2458
PctI	GAATGC	1 cut(s)	339
PdmI	GAANNNNTTC	2 cut(s)	2604, 2634
PfeI	GAWTC	8 cut(s)	63, 292, 847, 859, 1028, 2305, 2452, 2645
PflFI	GACNNNGTC	1 cut(s)	708
PfoI	TCCNGGA	1 cut(s)	2447
PkrI	GCNGC	8 cut(s)	334, 1225, 1501, 1584, 1587, 2185, 2437, 2625
PleI	GAGTC	1 cut(s)	1947
PluTI	GGCGCC	1 cut(s)	1667
PpsI	GAGTC	1 cut(s)	1947
PpuMI	RGGWCCY	2 cut(s)	537, 2418
PscI	ACATGT	3 cut(s)	298, 628, 2458
Psp5II	RGGWCCY	2 cut(s)	537, 2418
Psp6I	CCWGG	2 cut(s)	706, 2447
PspEI	GGTNACC	1 cut(s)	1556
PspGI	CCWGG	2 cut(s)	706, 2447
PspN4I	GGNNCC	4 cut(s)	741, 1665, 1734, 2420
PspPI	GGNCC	4 cut(s)	537, 710, 739, 2418
PspPPI	RGGWCCY	2 cut(s)	537, 2418
PspXI	VCTCGAGB	1 cut(s)	1668
PstI	CTGCAG	3 cut(s)	736, 835, 2659
PstNI	CAGNNNCTG	2 cut(s)	1814, 2408
PsuI	RGATCY	3 cut(s)	1732, 1873, 2617
PsyI	GACNNNGTC	1 cut(s)	708
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	5 cut(s)	58, 829, 973, 1474, 2099
RsaNI	GTAC	5 cut(s)	57, 828, 972, 1473, 2098
SalI	GTCGAC	1 cut(s)	624
SatI	GCNGC	8 cut(s)	333, 1224, 1500, 1583, 1586, 2184, 2436, 2624
Sau3AI	GATC	8 cut(s)	457, 529, 1603, 1732, 1831, 1873, 2315, 2617
Sau96I	GGNCC	4 cut(s)	537, 710, 739, 2418
ScaI	AGTACT	3 cut(s)	829, 1474, 2099
SchI	GAGTC	1 cut(s)	1948
ScrFI	CCNGG	2 cut(s)	708, 2449
SduI	GDGCHC	1 cut(s)	2219
SexAI	ACCWGGT	1 cut(s)	706
SfaNI	GCATC	6 cut(s)	88, 387, 1186, 2019, 2055, 2272
SfcI	CTRYAG	5 cut(s)	732, 831, 945, 1990, 2655
SfoI	GGCGCC	1 cut(s)	1665
Sfr274I	CTCGAG	1 cut(s)	1668
SinI	GGWCC	4 cut(s)	537, 710, 739, 2418
SlaI	CTCGAG	1 cut(s)	1668
SmlI	CTYRAG	3 cut(s)	1005, 1407, 1668
SmoI	CTYRAG	3 cut(s)	1005, 1407, 1668
SpeI	ACTAGT	2 cut(s)	767, 782
SseBI	AGGCCT	2 cut(s)	508, 1980
SsiI	CCGC	1 cut(s)	2433
SspDI	GGCGCC	1 cut(s)	1663
SspMI	CTAG	7 cut(s)	336, 768, 783, 1383, 2342, 2391, 2423
StuI	AGGCCT	2 cut(s)	508, 1980
StyD4I	CCNGG	2 cut(s)	706, 2447
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	8 cut(s)	275, 902, 1418, 1477, 1785, 2143, 2235, 2684
TaqI	TCGA	4 cut(s)	295, 625, 1669, 2455
TatI	WGTACW	3 cut(s)	827, 1472, 2097
TfiI	GAWTC	8 cut(s)	63, 292, 847, 859, 1028, 2305, 2452, 2645
TscAI	CASTG	6 cut(s)	551, 741, 1171, 1198, 2148, 2722
TseFI	GTSAC	3 cut(s)	775, 1556, 2510
TseI	GCWGC	8 cut(s)	332, 1223, 1499, 1582, 1585, 2183, 2435, 2623
Tsp45I	GTSAC	3 cut(s)	775, 1556, 2510
TspRI	CASTG	6 cut(s)	551, 741, 1171, 1198, 2148, 2722
Tth111I	GACNNNGTC	1 cut(s)	708
VpaK11BI	GGWCC	4 cut(s)	537, 710, 739, 2418
XagI	CCTNNNNNAGG	1 cut(s)	1565
XapI	RAATTY	8 cut(s)	437, 474, 865, 1011, 1096, 2196, 2442, 2484
XbaI	TCTAGA	2 cut(s)	1382, 2390
XceI	RCATGY	4 cut(s)	302, 632, 2462, 2705
XhoI	CTCGAG	1 cut(s)	1668
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	2 cut(s)	2604, 2634
XspI	CTAG	7 cut(s)	336, 768, 783, 1383, 2342, 2391, 2423
ZrmI	AGTACT	3 cut(s)	829, 1474, 2099
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.