Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001471

Physical Location & Seq

Genomic Coordinates Forward (+)

10578041 .. 10579308

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGAACGGTGACATCTTTGTGTCACAGCAAAAGTATGCAACTGATGTTATACACAAGTCTGGTCTTGATAGTGGTCACTCTCATTTTACTCCATGTCAATCTGGCCTGAAACTCATCAGAGACATGGGGAAACCACTTAATTCACATGAAAGTGCTCACTTCAGAAGTGTTGTAAGTTGTCTACAATACCTCACATTCACTAGACCTGACATTGCCTATGGTGTCAACTCTGTGTGCCAATTCCTGCACTCTCCAACAGAAGATCATTTTACTGCAGCCAAGAGAATTTTGAGATATATTAAAGGCACTATTGATTCTGGCATATGCTTCAGGAGGGGTCCTTACAAAGATAAAGTCTCTCAGTTTCCAGTTCATATTGATGCCTTCTGTGATGCAGATTGGACTGGGGATCCAAATGACAGGAAGTCCACCACTGGATTTGTAATTCTGCTTGAAGGGACTCCCATATCTTGGTGTAGCAAGAAGCAATCAGCAGTCTCAAGGTCATCCACAGAAGCTGAGTATAGGTCTATGGCTGACACAACCTCAGAGATCAAATGGATCCTACATCTGCTGAAAGACTTACACATTGAGCTGCAAGACAAACCTATCCTCCACTGTGATAATATCTCAGCTTTGGCTCTTGCCACAAATCCTGTTTTTCACTCAAAACTTAAGCACGTTGAGGTTGATGTGCATTTTACAAGGGACCAAGTTAAAGCTGGCACCATCAAGCTTCAATTTGTTGCATCCAAAGAGCAGATGGCAGACTTGTTTACTAAAGGACTTTGCTCACCTCAGCATCGTTATCTTTGCAACAGCTTGAAGCTAGGACCTTACCCTCAAGCTGAGGATCGAGGGTATGCAGAGATGAATGCTAGGCCAGAACAGCCACTCAATCACCGGGAGATCCAAACCAGTGACAATAGCGCAAGGGAAAACCACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

318

Amino Acids

35.77

Weight (kDa)

8.04

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00240
fragaria_vesca	FvH4_1g25543 FvH4_3g07841 FvH4_3g14871 FvH4_4g13042 FvH4_4g19532 FvH4_4g27904 FvH4_5g11311 FvH4_5g24711 FvH4_6g16681
malus_domestica	MD01G1044800.v1.1 MD05G1032500.v1.1 MD14G1067200.v1.1
pyrus_communis	pycom02g08540 pycom02g19080 pycom03g19430 pycom05g02910 pycom15g04590 pycom16g02160 pycom16g25210
rosa_chinensis	RchiOBHm_Chr1g0313691 RchiOBHm_Chr1g0339121 RchiOBHm_Chr2g0119341 RchiOBHm_Chr2g0141981 RchiOBHm_Chr2g0155191 RchiOBHm_Chr2g0175291 RchiOBHm_Chr3g0475621 RchiOBHm_Chr3g0482011 RchiOBHm_Chr4g0401001 RchiOBHm_Chr5g0038401 RchiOBHm_Chr6g0253961 RchiOBHm_Chr6g0266711 RchiOBHm_Chr7g0198221 RchiOBHm_Chr7g0200081
rosa_laevigata	RLG00000035859
rosa_roxburghii	Rroxscaffold_4G00281750
rosa_wichuraiana	Rw1G008180 Rw1G040520 Rw2G014210 Rw2G020850 Rw2G043190 Rw2G049320 Rw4G005820 Rw4G021520 Rw5G011150 Rw5G016420 Rw6G010970 Rw7G015120 Rw7G015940 Rw7G019550 Rw7G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	184
AclWI	GGATC	6 cut(s)	407, 420, 559, 572, 864, 907
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	148, 316
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	458, 743, 829
AhdI	GACNNNNNGTC	1 cut(s)	427
AluBI	AGCT	8 cut(s)	521, 598, 638, 725, 739, 825, 832, 851
AluI	AGCT	8 cut(s)	521, 598, 638, 725, 739, 825, 832, 851
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	117, 364, 505
AlwI	GGATC	6 cut(s)	407, 420, 559, 572, 864, 907
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	106, 884
ApeKI	GCWGC	2 cut(s)	278, 598
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspLEI	GCGC	1 cut(s)	935
AspS9I	GGNCC	3 cut(s)	341, 712, 836
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	3 cut(s)	23, 789, 896
AvaII	GGWCC	3 cut(s)	341, 712, 836
BamHI	GGATCC	2 cut(s)	412, 564
BanI	GGYRCC	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	160
BbvCI	CCTCAGC	2 cut(s)	801, 852
BbvI	GCAGC	2 cut(s)	290, 585
BccI	CCATC	2 cut(s)	740, 760
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	3 cut(s)	117, 364, 505
BfaI	CTAG	3 cut(s)	204, 833, 882
BfmI	CTRYAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	677
BisI	GCNGC	2 cut(s)	279, 599
BlsI	GCNGC	2 cut(s)	280, 600
Bme1390I	CCNGG	1 cut(s)	908
Bme18I	GGWCC	3 cut(s)	341, 712, 836
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	341, 712, 836
BmiI	GGNNCC	5 cut(s)	342, 414, 566, 713, 730
BmrFI	CCNGG	1 cut(s)	908
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	4 cut(s)	373, 385, 761, 814
BmuI	ACTGGG	1 cut(s)	417
Bpu10I	CCTNAGC	2 cut(s)	801, 852
BpuEI	CTTGAG	2 cut(s)	487, 831
BpuMI	CCSGG	1 cut(s)	908
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	4 cut(s)	371, 412, 442, 921
Bse3DI	GCAATG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	509, 752
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	6 cut(s)	377, 513, 564, 648, 815, 843
BseNI	ACTGG	4 cut(s)	371, 412, 442, 921
BseXI	GCAGC	2 cut(s)	290, 585
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	108, 886
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	907
BslFI	GGGAC	2 cut(s)	475, 725
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	3 cut(s)	117, 364, 505
BsmFI	GGGAC	2 cut(s)	475, 725
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	108, 886
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
BspANI	GGCC	2 cut(s)	108, 886
BspCNI	CTCAG	6 cut(s)	376, 514, 563, 647, 814, 844
BspLI	GGNNCC	5 cut(s)	342, 414, 566, 713, 730
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	6 cut(s)	407, 420, 559, 572, 864, 907
BspT107I	GGYRCC	1 cut(s)	728
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	4 cut(s)	371, 412, 442, 921
BssMI	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
Bst4CI	ACNGT	2 cut(s)	11, 623
BstAFI	CTTAAG	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	6 cut(s)	363, 522, 550, 634, 801, 852
BstF5I	GGATG	2 cut(s)	509, 752
BstHHI	GCGC	1 cut(s)	935
BstKTI	GATC	6 cut(s)	268, 415, 558, 567, 859, 915
BstMAI	GTCTC	3 cut(s)	117, 364, 505
BstMBI	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
BstMWI	GCNNNNNNNGC	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	290, 585
BstX2I	RGATCY	3 cut(s)	412, 564, 912
BstYI	RGATCY	3 cut(s)	412, 564, 912
BsuRI	GGCC	2 cut(s)	108, 886
BtsCI	GGATG	2 cut(s)	509, 752
BtsIMutI	CAGTG	3 cut(s)	435, 619, 928
Cac8I	GCNNGC	1 cut(s)	727
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	935
Cfr13I	GGNCC	3 cut(s)	341, 712, 836
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	96, 127, 149
DdeI	CTNAG	6 cut(s)	363, 522, 550, 634, 801, 852
DpnI	GATC	6 cut(s)	267, 414, 557, 566, 858, 914
DpnII	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
DriI	GACNNNNNGTC	1 cut(s)	427
Eam1105I	GACNNNNNGTC	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	341, 712, 836
Eco57I	CTGAAG	2 cut(s)	148, 316
EcoO109I	RGGNCCY	2 cut(s)	341, 836
FaeI	CATG	3 cut(s)	99, 130, 152
FaqI	GGGAC	2 cut(s)	475, 725
FatI	CATG	3 cut(s)	95, 126, 148
FauNDI	CATATG	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	279, 599
FokI	GGATG	2 cut(s)	496, 739
Fsp4HI	GCNGC	2 cut(s)	279, 599
FspBI	CTAG	3 cut(s)	204, 833, 882
GlaI	GCGC	1 cut(s)	934
GluI	GCNGC	2 cut(s)	279, 599
HaeIII	GGCC	2 cut(s)	108, 886
HapII	CCGG	1 cut(s)	907
HhaI	GCGC	1 cut(s)	935
Hin1II	CATG	3 cut(s)	99, 130, 152
Hin6I	GCGC	1 cut(s)	933
HinP1I	GCGC	1 cut(s)	933
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	2 cut(s)	317, 463
HpaII	CCGG	1 cut(s)	907
HphI	GGTGA	3 cut(s)	23, 789, 896
Hpy166II	GTNNAC	4 cut(s)	185, 229, 432, 780
Hpy188I	TCNGA	3 cut(s)	122, 167, 553
Hpy188III	TCNNGA	2 cut(s)	68, 334
Hpy8I	GTNNAC	4 cut(s)	185, 229, 432, 780
HpyAV	CCTTC	2 cut(s)	397, 452
HpyCH4III	ACNGT	2 cut(s)	11, 623
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	9 cut(s)	41, 250, 278, 398, 601, 700, 752, 819, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	892
HpyF3I	CTNAG	6 cut(s)	363, 522, 550, 634, 801, 852
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	99, 130, 152
HspAI	GCGC	1 cut(s)	933
Kzo9I	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
Lsp1109I	GCAGC	2 cut(s)	290, 585
LweI	GCATC	4 cut(s)	373, 385, 761, 814
MaeI	CTAG	3 cut(s)	204, 833, 882
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	4 cut(s)	11, 24, 77, 923
MalI	GATC	6 cut(s)	267, 414, 557, 566, 858, 914
MboI	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
MboII	GAAGA	2 cut(s)	16, 275
MflI	RGATCY	3 cut(s)	412, 564, 912
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	5 cut(s)	142, 242, 288, 447, 743
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	9 cut(s)	203, 330, 559, 626, 682, 810, 847, 854, 855
MseI	TTAA	4 cut(s)	141, 303, 678, 720
MslI	CAYNNNNRTG	3 cut(s)	20, 153, 381
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	1 cut(s)	907
MspR9I	CCNGG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	883
MwoI	GCNNNNNNNGC	1 cut(s)	892
NciI	CCSGG	1 cut(s)	908
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
NlaIII	CATG	3 cut(s)	99, 130, 152
NlaIV	GGNNCC	5 cut(s)	342, 414, 566, 713, 730
NmuCI	GTSAC	4 cut(s)	11, 24, 77, 923
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	2 cut(s)	280, 600
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	2 cut(s)	341, 836
Psp5II	RGGWCCY	2 cut(s)	341, 836
PspN4I	GGNNCC	5 cut(s)	342, 414, 566, 713, 730
PspPI	GGNCC	3 cut(s)	341, 712, 836
PspPPI	RGGWCCY	2 cut(s)	341, 836
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	412, 564, 912
RseI	CAYNNNNRTG	3 cut(s)	20, 153, 381
SaqAI	TTAA	4 cut(s)	141, 303, 678, 720
SatI	GCNGC	2 cut(s)	279, 599
Sau3AI	GATC	6 cut(s)	265, 412, 555, 564, 856, 912
Sau96I	GGNCC	3 cut(s)	341, 712, 836
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	4 cut(s)	373, 385, 761, 814
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	3 cut(s)	341, 712, 836
SmiMI	CAYNNNNRTG	3 cut(s)	20, 153, 381
SmlI	CTYRAG	3 cut(s)	502, 677, 846
SmoI	CTYRAG	3 cut(s)	502, 677, 846
Sse9I	AATT	5 cut(s)	142, 242, 288, 447, 743
SspMI	CTAG	3 cut(s)	204, 833, 882
StyD4I	CCNGG	1 cut(s)	906
TaaI	ACNGT	2 cut(s)	11, 623
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	1 cut(s)	859
TasI	AATT	5 cut(s)	142, 242, 288, 447, 743
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	4 cut(s)	141, 303, 678, 720
Tru9I	TTAA	4 cut(s)	141, 303, 678, 720
TscAI	CASTG	3 cut(s)	442, 626, 928
TseFI	GTSAC	4 cut(s)	11, 24, 77, 923
TseI	GCWGC	2 cut(s)	278, 598
Tsp45I	GTSAC	4 cut(s)	11, 24, 77, 923
TspDTI	ATGAA	4 cut(s)	17, 165, 365, 890
TspRI	CASTG	3 cut(s)	442, 626, 928
Van91I	CCANNNNNTGG	1 cut(s)	474
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	341, 712, 836
XapI	RAATTY	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	722, 763
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	3 cut(s)	204, 833, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.