DUF1785
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ArgoN | PF16486 | 115 - 252 | 5.1e-37 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 263 - 312 | 2.4e-19 | Argonaute linker 1 domain |
| PAZ | PF02170 | 339 - 443 | 2.9e-25 | PAZ domain |
| ArgoL2 | PF16488 | 452 - 499 | 3.4e-14 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 505 - 583 | 2e-07 | Mid domain of argonaute |
| Piwi | PF02171 | 602 - 916 | 3.8e-108 | Piwi domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 622 |
| Acc65I | GGTACC | 1 cut(s) | 332 |
| AccB1I | GGYRCC | 3 cut(s) | 136, 332, 1562 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 26 |
| AccBSI | CCGCTC | 2 cut(s) | 157, 2682 |
| AccII | CGCG | 3 cut(s) | 12, 33, 48 |
| AclWI | GGATC | 1 cut(s) | 1840 |
| AcoI | YGGCCR | 2 cut(s) | 49, 2275 |
| AcsI | RAATTY | 4 cut(s) | 348, 1424, 2531, 2562 |
| AcuI | CTGAAG | 4 cut(s) | 447, 1043, 1781, 2757 |
| AcyI | GRCGYC | 1 cut(s) | 173 |
| AflII | CTTAAG | 1 cut(s) | 1016 |
| AgeI | ACCGGT | 1 cut(s) | 23 |
| AjnI | CCWGG | 4 cut(s) | 1276, 2220, 2491, 2811 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1559, 1591, 1854, 1886 |
| Alw21I | GWGCWC | 2 cut(s) | 2678, 2737 |
| Alw44I | GTGCAC | 1 cut(s) | 2674 |
| AlwI | GGATC | 1 cut(s) | 1840 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 104, 2498 |
| Ama87I | CYCGRG | 1 cut(s) | 1679 |
| ApaLI | GTGCAC | 1 cut(s) | 2674 |
| ApeKI | GCWGC | 8 cut(s) | 227, 269, 761, 1785, 2096, 2723, 2787, 2801 |
| ApoI | RAATTY | 4 cut(s) | 348, 1424, 2531, 2562 |
| AseI | ATTAAT | 1 cut(s) | 1953 |
| AsiGI | ACCGGT | 1 cut(s) | 23 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1231, 1879, 2615 |
| Asp718I | GGTACC | 1 cut(s) | 332 |
| AspLEI | GCGC | 1 cut(s) | 109 |
| AspS9I | GGNCC | 5 cut(s) | 17, 74, 611, 879, 1841 |
| AsuC2I | CCSGG | 2 cut(s) | 69, 1090 |
| AsuHPI | GGTGA | 4 cut(s) | 839, 958, 1393, 2635 |
| AvaI | CYCGRG | 1 cut(s) | 1679 |
| AvaII | GGWCC | 4 cut(s) | 17, 74, 611, 1841 |
| AxyI | CCTNAGG | 2 cut(s) | 875, 2124 |
| BaeGI | GKGCMC | 1 cut(s) | 2678 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1229, 1262, 2487, 2520 |
| BalI | TGGCCA | 1 cut(s) | 2277 |
| BanI | GGYRCC | 3 cut(s) | 136, 332, 1562 |
| BbsI | GAAGAC | 2 cut(s) | 449, 2082 |
| Bbv12I | GWGCWC | 2 cut(s) | 2678, 2737 |
| BbvI | GCAGC | 8 cut(s) | 214, 256, 748, 1797, 2108, 2710, 2788, 2799 |
| BceAI | ACGGC | 2 cut(s) | 36, 538 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2423, 2457 |
| BciT130I | CCWGG | 4 cut(s) | 1278, 2222, 2493, 2813 |
| BciVI | GTATCC | 2 cut(s) | 1504, 2500 |
| BclI | TGATCA | 3 cut(s) | 1806, 2238, 2626 |
| BcnI | CCSGG | 2 cut(s) | 69, 1090 |
| BfaI | CTAG | 4 cut(s) | 1467, 1599, 1688, 1713 |
| BfmI | CTRYAG | 2 cut(s) | 165, 2302 |
| BfrI | CTTAAG | 1 cut(s) | 1016 |
| BfuAI | ACCTGC | 1 cut(s) | 622 |
| BfuI | GTATCC | 2 cut(s) | 1504, 2500 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 86 |
| BglII | AGATCT | 2 cut(s) | 394, 2185 |
| Bme1390I | CCNGG | 6 cut(s) | 69, 1090, 1278, 2222, 2493, 2813 |
| Bme18I | GGWCC | 4 cut(s) | 17, 74, 611, 1841 |
| BmeT110I | CYCGRG | 1 cut(s) | 1679 |
| BmgT120I | GGNCC | 5 cut(s) | 17, 74, 611, 879, 1841 |
| BmiI | GGNNCC | 6 cut(s) | 76, 138, 198, 334, 1564, 1843 |
| BmrFI | CCNGG | 6 cut(s) | 69, 1090, 1278, 2222, 2493, 2813 |
| BmrI | ACTGGG | 2 cut(s) | 1688, 1879 |
| BmsI | GCATC | 8 cut(s) | 239, 409, 443, 498, 1453, 1981, 2347, 2443 |
| BmuI | ACTGGG | 2 cut(s) | 1688, 1879 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2082 |
| BpiI | GAAGAC | 2 cut(s) | 449, 2082 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 169, 201, 1996, 2028 |
| BpmI | CTGGAG | 4 cut(s) | 81, 111, 874, 1151 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1899 |
| BpuEI | CTTGAG | 1 cut(s) | 973 |
| BpuMI | CCSGG | 2 cut(s) | 69, 1090 |
| Bsa29I | ATCGAT | 1 cut(s) | 1572 |
| BsaBI | GATNNNNATC | 1 cut(s) | 399 |
| BsaHI | GRCGYC | 1 cut(s) | 173 |
| BsaI | GGTCTC | 2 cut(s) | 652, 2134 |
| BsaJI | CCNNGG | 6 cut(s) | 46, 52, 67, 1089, 1254, 1277 |
| BsaWI | WCCGGW | 2 cut(s) | 23, 199 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 181, 211, 1288, 1318, 2378, 2408 |
| Bse118I | RCCGGY | 2 cut(s) | 23, 142 |
| Bse1I | ACTGG | 6 cut(s) | 857, 1461, 1694, 1885, 2123, 2278 |
| Bse21I | CCTNAGG | 2 cut(s) | 875, 2124 |
| Bse3DI | GCAATG | 1 cut(s) | 2253 |
| Bse8I | GATNNNNATC | 1 cut(s) | 399 |
| BseBI | CCWGG | 4 cut(s) | 1278, 2222, 2493, 2813 |
| BseCI | ATCGAT | 1 cut(s) | 1572 |
| BseDI | CCNNGG | 6 cut(s) | 46, 52, 67, 1089, 1254, 1277 |
| BseJI | GATNNNNATC | 1 cut(s) | 399 |
| BseMI | GCAATG | 1 cut(s) | 2253 |
| BseNI | ACTGG | 6 cut(s) | 857, 1461, 1694, 1885, 2123, 2278 |
| BseRI | GAGGAG | 2 cut(s) | 2017, 2402 |
| BseSI | GKGCMC | 1 cut(s) | 2678 |
| BseX3I | CGGCCG | 1 cut(s) | 49 |
| BseXI | GCAGC | 8 cut(s) | 214, 256, 748, 1797, 2108, 2710, 2788, 2799 |
| BsgI | GTGCAG | 3 cut(s) | 747, 2444, 2787 |
| Bsh1236I | CGCG | 3 cut(s) | 12, 33, 48 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshNI | GGYRCC | 3 cut(s) | 136, 332, 1562 |
| BshTI | ACCGGT | 1 cut(s) | 23 |
| BshVI | ATCGAT | 1 cut(s) | 1572 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2678, 2737 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1679 |
| BslFI | GGGAC | 5 cut(s) | 60, 1593, 1676, 1791, 1827 |
| BsmBI | CGTCTC | 2 cut(s) | 774, 2450 |
| BsmFI | GGGAC | 5 cut(s) | 60, 1593, 1676, 1791, 1827 |
| BsmI | GAATGC | 2 cut(s) | 2258, 2726 |
| Bso31I | GGTCTC | 2 cut(s) | 652, 2134 |
| BsoBI | CYCGRG | 1 cut(s) | 1679 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2678, 2737 |
| Bsp19I | CCATGG | 1 cut(s) | 1254 |
| BspDI | ATCGAT | 1 cut(s) | 1572 |
| BspFNI | CGCG | 3 cut(s) | 12, 33, 48 |
| BspHI | TCATGA | 1 cut(s) | 1171 |
| BspLI | GGNNCC | 6 cut(s) | 76, 138, 198, 334, 1564, 1843 |
| BspMI | ACCTGC | 1 cut(s) | 622 |
| BspPI | GGATC | 1 cut(s) | 1840 |
| BspQI | GCTCTTC | 1 cut(s) | 52 |
| BspT107I | GGYRCC | 3 cut(s) | 136, 332, 1562 |
| BspTI | CTTAAG | 1 cut(s) | 1016 |
| BspTNI | GGTCTC | 2 cut(s) | 652, 2134 |
| BsrBI | CCGCTC | 2 cut(s) | 157, 2682 |
| BsrDI | GCAATG | 1 cut(s) | 2253 |
| BsrFI | RCCGGY | 2 cut(s) | 23, 142 |
| BsrI | ACTGG | 6 cut(s) | 857, 1461, 1694, 1885, 2123, 2278 |
| BssAI | RCCGGY | 2 cut(s) | 23, 142 |
| BssECI | CCNNGG | 6 cut(s) | 46, 52, 67, 1089, 1254, 1277 |
| BssNI | GRCGYC | 1 cut(s) | 173 |
| BssT1I | CCWWGG | 1 cut(s) | 1254 |
| Bst2UI | CCWGG | 4 cut(s) | 1278, 2222, 2493, 2813 |
| Bst4CI | ACNGT | 9 cut(s) | 337, 768, 782, 1184, 1701, 1981, 2081, 2500, 2601 |
| Bst6I | CTCTTC | 4 cut(s) | 52, 497, 524, 2453 |
| BstACI | GRCGYC | 1 cut(s) | 173 |
| BstAFI | CTTAAG | 1 cut(s) | 1016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2105 |
| BstC8I | GCNNGC | 8 cut(s) | 144, 162, 208, 237, 513, 1212, 1905, 2737 |
| BstDSI | CCRYGG | 3 cut(s) | 46, 52, 1254 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| BstFNI | CGCG | 3 cut(s) | 12, 33, 48 |
| BstHHI | GCGC | 1 cut(s) | 109 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstNI | CCWGG | 4 cut(s) | 1278, 2222, 2493, 2813 |
| BstNSI | RCATGY | 1 cut(s) | 1327 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2082 |
| BstSCI | CCNGG | 6 cut(s) | 67, 1088, 1276, 2220, 2491, 2811 |
| BstSFI | CTRYAG | 2 cut(s) | 165, 2302 |
| BstSLI | GKGCMC | 1 cut(s) | 2678 |
| BstUI | CGCG | 3 cut(s) | 12, 33, 48 |
| BstV1I | GCAGC | 8 cut(s) | 214, 256, 748, 1797, 2108, 2710, 2788, 2799 |
| BstV2I | GAAGAC | 2 cut(s) | 449, 2082 |
| BstX2I | RGATCY | 3 cut(s) | 394, 1832, 2185 |
| BstYI | RGATCY | 3 cut(s) | 394, 1832, 2185 |
| BstZI | CGGCCG | 1 cut(s) | 49 |
| Bsu15I | ATCGAT | 1 cut(s) | 1572 |
| Bsu36I | CCTNAGG | 2 cut(s) | 875, 2124 |
| BsuI | GTATCC | 2 cut(s) | 1504, 2500 |
| BsuTUI | ATCGAT | 1 cut(s) | 1572 |
| BtgI | CCRYGG | 3 cut(s) | 46, 52, 1254 |
| BtgZI | GCGATG | 1 cut(s) | 216 |
| BtsI | GCAGTG | 2 cut(s) | 1066, 2619 |
| BtsIMutI | CAGTG | 9 cut(s) | 150, 899, 1052, 1066, 1454, 1892, 1977, 2026, 2619 |
| BveI | ACCTGC | 1 cut(s) | 622 |
| Cac8I | GCNNGC | 8 cut(s) | 144, 162, 208, 237, 513, 1212, 1905, 2737 |
| CaiI | CAGNNNCTG | 2 cut(s) | 104, 2498 |
| CciI | TCATGA | 1 cut(s) | 1171 |
| CfoI | GCGC | 1 cut(s) | 109 |
| Cfr10I | RCCGGY | 2 cut(s) | 23, 142 |
| Cfr13I | GGNCC | 5 cut(s) | 17, 74, 611, 879, 1841 |
| Cfr42I | CCGCGG | 1 cut(s) | 49 |
| ClaI | ATCGAT | 1 cut(s) | 1572 |
| CseI | GACGC | 2 cut(s) | 181, 1397 |
| CsiI | ACCWGGT | 1 cut(s) | 2491 |
| CspAI | ACCGGT | 1 cut(s) | 23 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 871, 906 |
| EaeI | YGGCCR | 2 cut(s) | 49, 2275 |
| EagI | CGGCCG | 1 cut(s) | 49 |
| Eam1104I | CTCTTC | 4 cut(s) | 52, 497, 524, 2453 |
| EarI | CTCTTC | 4 cut(s) | 52, 497, 524, 2453 |
| EciI | GGCGGA | 1 cut(s) | 54 |
| EclXI | CGGCCG | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 1 cut(s) | 1254 |
| Eco147I | AGGCCT | 2 cut(s) | 2220, 2372 |
| Eco31I | GGTCTC | 2 cut(s) | 652, 2134 |
| Eco32I | GATATC | 2 cut(s) | 913, 1741 |
| Eco47I | GGWCC | 4 cut(s) | 17, 74, 611, 1841 |
| Eco52I | CGGCCG | 1 cut(s) | 49 |
| Eco57I | CTGAAG | 4 cut(s) | 447, 1043, 1781, 2757 |
| Eco81I | CCTNAGG | 2 cut(s) | 875, 2124 |
| Eco88I | CYCGRG | 1 cut(s) | 1679 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| EcoRI | GAATTC | 2 cut(s) | 348, 2562 |
| EcoRII | CCWGG | 4 cut(s) | 1276, 2220, 2491, 2811 |
| EcoRV | GATATC | 2 cut(s) | 913, 1741 |
| EcoT14I | CCWWGG | 1 cut(s) | 1254 |
| ErhI | CCWWGG | 1 cut(s) | 1254 |
| Esp3I | CGTCTC | 2 cut(s) | 774, 2450 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 816, 848 |
| FaqI | GGGAC | 5 cut(s) | 60, 1593, 1676, 1791, 1827 |
| FauI | CCCGC | 4 cut(s) | 85, 2062, 2687, 2783 |
| FauNDI | CATATG | 2 cut(s) | 517, 2665 |
| FbaI | TGATCA | 3 cut(s) | 1806, 2238, 2626 |
| FspBI | CTAG | 4 cut(s) | 1467, 1599, 1688, 1713 |
| GlaI | GCGC | 1 cut(s) | 108 |
| GsuI | CTGGAG | 4 cut(s) | 81, 111, 874, 1151 |
| HgaI | GACGC | 2 cut(s) | 181, 1397 |
| HhaI | GCGC | 1 cut(s) | 109 |
| Hin1I | GRCGYC | 1 cut(s) | 173 |
| Hin6I | GCGC | 1 cut(s) | 107 |
| HinP1I | GCGC | 1 cut(s) | 107 |
| HincII | GTYRAC | 2 cut(s) | 1119, 2458 |
| HindII | GTYRAC | 2 cut(s) | 1119, 2458 |
| HindIII | AAGCTT | 1 cut(s) | 1913 |
| HinfI | GANTC | 8 cut(s) | 488, 1232, 1361, 2008, 2145, 2161, 2292, 2638 |
| HphI | GGTGA | 4 cut(s) | 839, 958, 1393, 2635 |
| Hpy166II | GTNNAC | 7 cut(s) | 551, 1119, 1125, 1417, 2458, 2619, 2676 |
| Hpy8I | GTNNAC | 7 cut(s) | 551, 1119, 1125, 1417, 2458, 2619, 2676 |
| Hpy99I | CGWCG | 4 cut(s) | 175, 292, 295, 341 |
| HpyAV | CCTTC | 4 cut(s) | 120, 593, 1226, 2362 |
| HpyCH4III | ACNGT | 9 cut(s) | 337, 768, 782, 1184, 1701, 1981, 2081, 2500, 2601 |
| HpyCH4IV | ACGT | 1 cut(s) | 1121 |
| HpySE526I | ACGT | 1 cut(s) | 1121 |
| Hsp92I | GRCGYC | 1 cut(s) | 173 |
| HspAI | GCGC | 1 cut(s) | 107 |
| KpnI | GGTACC | 1 cut(s) | 336 |
| KroI | GCCGGC | 1 cut(s) | 142 |
| KroNI | GCCGGC | 1 cut(s) | 144 |
| Ksp22I | TGATCA | 3 cut(s) | 1806, 2238, 2626 |
| KspI | CCGCGG | 1 cut(s) | 49 |
| LguI | GCTCTTC | 1 cut(s) | 52 |
| LmnI | GCTCC | 5 cut(s) | 130, 136, 202, 277, 1258 |
| Lsp1109I | GCAGC | 8 cut(s) | 214, 256, 748, 1797, 2108, 2710, 2788, 2799 |
| LweI | GCATC | 8 cut(s) | 239, 409, 443, 498, 1453, 1981, 2347, 2443 |
| MabI | ACCWGGT | 1 cut(s) | 2491 |
| MaeI | CTAG | 4 cut(s) | 1467, 1599, 1688, 1713 |
| MaeII | ACGT | 1 cut(s) | 1121 |
| MaeIII | GTNAC | 7 cut(s) | 946, 1048, 1093, 1315, 1892, 2053, 2407 |
| MbiI | CCGCTC | 2 cut(s) | 157, 2682 |
| MflI | RGATCY | 3 cut(s) | 394, 1832, 2185 |
| MhlI | GDGCHC | 2 cut(s) | 2678, 2737 |
| MlsI | TGGCCA | 1 cut(s) | 2277 |
| MluNI | TGGCCA | 1 cut(s) | 2277 |
| MlyI | GAGTC | 2 cut(s) | 497, 2632 |
| MmeI | TCCRAC | 4 cut(s) | 44, 212, 273, 2549 |
| Mox20I | TGGCCA | 1 cut(s) | 2277 |
| MroNI | GCCGGC | 1 cut(s) | 142 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1231, 1879, 2615 |
| MscI | TGGCCA | 1 cut(s) | 2277 |
| MslI | CAYNNNNRTG | 4 cut(s) | 405, 408, 1646, 2592 |
| Msp20I | TGGCCA | 1 cut(s) | 2277 |
| MspA1I | CMGCKG | 4 cut(s) | 48, 227, 469, 2790 |
| MspCI | CTTAAG | 1 cut(s) | 1016 |
| MspR9I | CCNGG | 6 cut(s) | 69, 1090, 1278, 2222, 2493, 2813 |
| Mva1269I | GAATGC | 2 cut(s) | 2258, 2726 |
| MvaI | CCWGG | 4 cut(s) | 1278, 2222, 2493, 2813 |
| MvnI | CGCG | 3 cut(s) | 12, 33, 48 |
| NaeI | GCCGGC | 1 cut(s) | 144 |
| NciI | CCSGG | 2 cut(s) | 69, 1090 |
| NcoI | CCATGG | 1 cut(s) | 1254 |
| NdeI | CATATG | 2 cut(s) | 517, 2665 |
| NgoMIV | GCCGGC | 1 cut(s) | 142 |
| NlaIV | GGNNCC | 6 cut(s) | 76, 138, 198, 334, 1564, 1843 |
| NmeAIII | GCCGAG | 2 cut(s) | 201, 629 |
| NmuCI | GTSAC | 3 cut(s) | 946, 1093, 2053 |
| NspI | RCATGY | 1 cut(s) | 1327 |
| PagI | TCATGA | 1 cut(s) | 1171 |
| PceI | AGGCCT | 2 cut(s) | 2220, 2372 |
| PciSI | GCTCTTC | 1 cut(s) | 52 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 443 |
| PctI | GAATGC | 2 cut(s) | 2258, 2726 |
| PdiI | GCCGGC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1231, 1879, 2615 |
| PfeI | GAWTC | 6 cut(s) | 1232, 1361, 2008, 2145, 2161, 2292 |
| PflFI | GACNNNGTC | 1 cut(s) | 1605 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 26 |
| PinAI | ACCGGT | 1 cut(s) | 23 |
| PleI | GAGTC | 2 cut(s) | 496, 2632 |
| PpsI | GAGTC | 2 cut(s) | 496, 2632 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2082 |
| PshBI | ATTAAT | 1 cut(s) | 1953 |
| Psp6I | CCWGG | 4 cut(s) | 1276, 2220, 2491, 2811 |
| PspGI | CCWGG | 4 cut(s) | 1276, 2220, 2491, 2811 |
| PspN4I | GGNNCC | 6 cut(s) | 76, 138, 198, 334, 1564, 1843 |
| PspPI | GGNCC | 5 cut(s) | 17, 74, 611, 879, 1841 |
| PstNI | CAGNNNCTG | 2 cut(s) | 104, 2498 |
| PsuI | RGATCY | 3 cut(s) | 394, 1832, 2185 |
| PsyI | GACNNNGTC | 1 cut(s) | 1605 |
| PvuII | CAGCTG | 2 cut(s) | 227, 469 |
| RseI | CAYNNNNRTG | 4 cut(s) | 405, 408, 1646, 2592 |
| SacII | CCGCGG | 1 cut(s) | 49 |
| SapI | GCTCTTC | 1 cut(s) | 52 |
| Sau96I | GGNCC | 5 cut(s) | 17, 74, 611, 879, 1841 |
| SchI | GAGTC | 2 cut(s) | 497, 2632 |
| ScrFI | CCNGG | 6 cut(s) | 69, 1090, 1278, 2222, 2493, 2813 |
| SduI | GDGCHC | 2 cut(s) | 2678, 2737 |
| SexAI | ACCWGGT | 1 cut(s) | 2491 |
| SfaNI | GCATC | 8 cut(s) | 239, 409, 443, 498, 1453, 1981, 2347, 2443 |
| SfcI | CTRYAG | 2 cut(s) | 165, 2302 |
| Sfr303I | CCGCGG | 1 cut(s) | 49 |
| SgrBI | CCGCGG | 1 cut(s) | 49 |
| SinI | GGWCC | 4 cut(s) | 17, 74, 611, 1841 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 405, 408, 1646, 2592 |
| SmlI | CTYRAG | 2 cut(s) | 988, 1016 |
| SmoI | CTYRAG | 2 cut(s) | 988, 1016 |
| SseBI | AGGCCT | 2 cut(s) | 2220, 2372 |
| SspI | AATATT | 2 cut(s) | 1166, 1369 |
| SspMI | CTAG | 4 cut(s) | 1467, 1599, 1688, 1713 |
| StuI | AGGCCT | 2 cut(s) | 2220, 2372 |
| StyD4I | CCNGG | 6 cut(s) | 67, 1088, 1276, 2220, 2491, 2811 |
| StyI | CCWWGG | 1 cut(s) | 1254 |
| TaaI | ACNGT | 9 cut(s) | 337, 768, 782, 1184, 1701, 1981, 2081, 2500, 2601 |
| TaiI | ACGT | 1 cut(s) | 1124 |
| TaqI | TCGA | 4 cut(s) | 437, 1081, 1572, 2270 |
| TatI | WGTACW | 2 cut(s) | 1696, 2596 |
| TauI | GCSGC | 8 cut(s) | 15, 36, 39, 48, 51, 160, 325, 1656 |
| TfiI | GAWTC | 6 cut(s) | 1232, 1361, 2008, 2145, 2161, 2292 |
| TscAI | CASTG | 9 cut(s) | 157, 906, 1059, 1066, 1461, 1892, 1984, 2026, 2626 |
| TseFI | GTSAC | 3 cut(s) | 946, 1093, 2053 |
| TseI | GCWGC | 8 cut(s) | 227, 269, 761, 1785, 2096, 2723, 2787, 2801 |
| Tsp45I | GTSAC | 3 cut(s) | 946, 1093, 2053 |
| TspDTI | ATGAA | 6 cut(s) | 542, 1437, 1458, 2216, 2223, 2242 |
| TspGWI | ACGGA | 3 cut(s) | 276, 1416, 2380 |
| TspRI | CASTG | 9 cut(s) | 157, 906, 1059, 1066, 1461, 1892, 1984, 2026, 2626 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1605 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 26 |
| Vha464I | CTTAAG | 1 cut(s) | 1016 |
| VneI | GTGCAC | 1 cut(s) | 2674 |
| VpaK11BI | GGWCC | 4 cut(s) | 17, 74, 611, 1841 |
| VspI | ATTAAT | 1 cut(s) | 1953 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1196 |
| XapI | RAATTY | 4 cut(s) | 348, 1424, 2531, 2562 |
| XbaI | TCTAGA | 1 cut(s) | 1598 |
| XceI | RCATGY | 1 cut(s) | 1327 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 370, 1153 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1231, 1879, 2615 |
| XspI | CTAG | 4 cut(s) | 1467, 1599, 1688, 1713 |