Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59756667 .. 59764260

Gene Structure 7594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGAGCAGAAGTTGACACTCGAGACGACGACGGCCGTGGCTGTTGTGCCGCCGGCGTCATCGAAGGCGGTGAGGTTTCCGCAGAGACCGGGGTTCGGGACGGTTACCATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGTTTGTATTCTGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTACACAGCAGGGCCATTGCCATTTTCCTCCCAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAATTTAAGGTGGCTTTCACTTTGGCAAATAAGCCAGACCTTTATCAACTACAACAGTACACTGTTGTTGGGAGGTCATTTGTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGAGGTTTTTATCAAAGTCTATGCCCAATCCAGATAGGACTTTCCCTTAATAGTGATGTGTGTGTGAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTAACCACACTGATCGCACCAAGCATTTGCCTGATCGTGATTGTATAAAGTTACATATTACCTTGTTATCAACATATCATTTGCATGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGATTGGACCAAAAACGAAGAGTATTATTTAATTTTGTCTCTTAGGCTTACTTGTGAAGATGAGAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCGATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAAATTACTAGAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATAACACAGATGATTAGGCAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGGGAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTCATCCCCAGATGGGGCGGTGGAACATGACAAACAAGAAAATGGTCAATGGTGGTAAATTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTTCGAGTTTCTTGGGGCTTTGGTCGATGAGTTTTCTCCCCAACCCTTGCTTCCAGTACAGTCTTCTCATTCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAATTTGTCTGCTCAGAAAGGACGACAACTTCAGTTATTGATAGTCATTTTGCCTGATAAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGATACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCACAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTACTATCACTGTGAAGAAGATGCCTGTTGTGACCGATCACTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGGGATGACAGTAGCCCATCAATAGCAGCAGTCGTGTACTCAACGGATTGGCCAGAGGTCACAGACTACAGAGCAATTGTGTCGGCGCAGCATCACCGCGATGAAATAATCGAAGATCTCTACAAATCACACAAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTTCAAGTTTTAAAAGGCATCATGCTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAAGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCAGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCAATTGCTCATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

737

Amino Acids

84.04

Weight (kDa)

9.4

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	35 - 133	6.6e-17	N-terminal domain of argonaute
ArgoL1	PF08699	135 - 183	1.4e-12	Argonaute linker 1 domain
PAZ	PF02170	254 - 308	1.5e-08	PAZ domain
ArgoL2	PF16488	322 - 372	7.9e-11	Argonaute linker 2 domain
Piwi	PF02171	465 - 629	1.3e-36	Piwi domain
Piwi	PF02171	632 - 734	2e-38	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1034
AarI	CACCTGC	1 cut(s)	2188
Acc36I	ACCTGC	1 cut(s)	2188
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccII	CGCG	1 cut(s)	1722
AciI	CCGC	6 cut(s)	50, 68, 80, 691, 1159, 1720
AclWI	GGATC	2 cut(s)	130, 339
AcoI	YGGCCR	3 cut(s)	33, 842, 1673
AcsI	RAATTY	4 cut(s)	198, 338, 1043, 2009
AcuI	CTGAAG	1 cut(s)	1370
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	7 cut(s)	395, 815, 1308, 1341, 1661, 1975, 2144
AfiI	CCNNNNNNNGG	7 cut(s)	95, 145, 290, 690, 1154, 1155, 1622
AgsI	TTSAA	7 cut(s)	312, 551, 688, 854, 870, 1887, 1967
AjnI	CCWGG	3 cut(s)	258, 1969, 2043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1284, 1316
AloI	GAACNNNNNNTCC	2 cut(s)	2041, 2073
AluBI	AGCT	4 cut(s)	430, 839, 857, 1085
AluI	AGCT	4 cut(s)	430, 839, 857, 1085
Alw21I	GWGCWC	1 cut(s)	2156
Alw26I	GTCTC	7 cut(s)	17, 79, 173, 424, 759, 1008, 1479
Alw44I	GTGCAC	1 cut(s)	2152
AlwI	GGATC	2 cut(s)	130, 339
AlwNI	CAGNNNCTG	1 cut(s)	1976
Ama87I	CYCGRG	3 cut(s)	20, 960, 1086
AoxI	GGCC	6 cut(s)	33, 239, 434, 842, 1673, 1873
ApaLI	GTGCAC	1 cut(s)	2152
ApeKI	GCWGC	4 cut(s)	299, 1619, 1649, 1711
ApoI	RAATTY	4 cut(s)	198, 338, 1043, 2009
AspLEI	GCGC	1 cut(s)	1711
AspS9I	GGNCC	3 cut(s)	239, 434, 723
AsuC2I	CCSGG	2 cut(s)	90, 1624
AsuHPI	GGTGA	5 cut(s)	82, 160, 464, 574, 1709
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	3 cut(s)	20, 960, 1086
AvaII	GGWCC	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	2156
BaeI	ACNNNNGTAYC	2 cut(s)	1965, 1998
BalI	TGGCCA	2 cut(s)	844, 1675
BanII	GRGCYC	1 cut(s)	1491
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	2 cut(s)	300, 1305
Bbv12I	GWGCWC	1 cut(s)	2156
BbvI	GCAGC	4 cut(s)	286, 1631, 1661, 1723
BccI	CCATC	8 cut(s)	206, 284, 1105, 1147, 1648, 1853, 1939, 2099
BceAI	ACGGC	4 cut(s)	20, 48, 1819, 2040
BcgI	CGANNNNNNTGC	6 cut(s)	785, 819, 1686, 1720, 1889, 1923
BciT130I	CCWGG	3 cut(s)	260, 1971, 2045
BciVI	GTATCC	1 cut(s)	1246
BclI	TGATCA	1 cut(s)	1924
BcnI	CCSGG	2 cut(s)	90, 1624
BcoDI	GTCTC	7 cut(s)	17, 79, 173, 424, 759, 1008, 1479
BfaI	CTAG	2 cut(s)	449, 938
BfmI	CTRYAG	7 cut(s)	300, 1690, 1813, 1852, 2004, 2100, 2169
BfuAI	ACCTGC	1 cut(s)	2188
BfuI	GTATCC	1 cut(s)	1246
BglII	AGATCT	2 cut(s)	539, 1738
BisI	GCNGC	5 cut(s)	50, 300, 1620, 1650, 1712
BlsI	GCNGC	5 cut(s)	51, 301, 1621, 1651, 1713
Bme1390I	CCNGG	5 cut(s)	90, 260, 1624, 1971, 2045
Bme18I	GGWCC	1 cut(s)	723
BmeT110I	CYCGRG	3 cut(s)	20, 960, 1086
BmgT120I	GGNCC	3 cut(s)	239, 434, 723
BmrFI	CCNGG	5 cut(s)	90, 260, 1624, 1971, 2045
BmsI	GCATC	4 cut(s)	134, 1548, 1723, 1909
BoxI	GACNNNNGTC	1 cut(s)	1125
BpiI	GAAGAC	2 cut(s)	300, 1305
BpmI	CTGGAG	2 cut(s)	490, 1213
Bpu14I	TTCGAA	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	90, 1624
BsaAI	YACGTR	1 cut(s)	2142
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	6 cut(s)	36, 89, 258, 959, 1623, 2044
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 1590, 1620
Bsc4I	CCNNNNNNNGG	7 cut(s)	95, 145, 290, 690, 1154, 1155, 1622
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	4 cut(s)	165, 473, 1304, 1876
Bse3DI	GCAATG	3 cut(s)	242, 868, 1103
BseBI	CCWGG	3 cut(s)	260, 1971, 2045
BseDI	CCNNGG	6 cut(s)	36, 89, 258, 959, 1623, 2044
BseGI	GGATG	3 cut(s)	1144, 1612, 1633
BseLI	CCNNNNNNNGG	7 cut(s)	95, 145, 290, 690, 1154, 1155, 1622
BseMI	GCAATG	3 cut(s)	242, 868, 1103
BseMII	CTCAG	7 cut(s)	168, 417, 558, 1357, 1382, 1490, 1752
BseNI	ACTGG	4 cut(s)	165, 473, 1304, 1876
BseSI	GKGCMC	1 cut(s)	2156
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	286, 1631, 1661, 1723
Bsh1236I	CGCG	1 cut(s)	1722
Bsh1285I	CGRYCG	2 cut(s)	36, 2162
BshFI	GGCC	6 cut(s)	35, 241, 436, 844, 1675, 1875
BsiEI	CGRYCG	2 cut(s)	36, 2162
BsiHKAI	GWGCWC	1 cut(s)	2156
BsiHKCI	CYCGRG	3 cut(s)	20, 960, 1086
BsiSI	CCGG	3 cut(s)	53, 89, 1623
BsiWI	CGTACG	1 cut(s)	2142
BslFI	GGGAC	2 cut(s)	112, 977
BslI	CCNNNNNNNGG	7 cut(s)	95, 145, 290, 690, 1154, 1155, 1622
BsmAI	GTCTC	7 cut(s)	17, 79, 173, 424, 759, 1008, 1479
BsmBI	CGTCTC	3 cut(s)	17, 173, 1008
BsmFI	GGGAC	2 cut(s)	112, 977
BsnI	GGCC	6 cut(s)	35, 241, 436, 844, 1675, 1875
Bso31I	GGTCTC	1 cut(s)	79
BsoBI	CYCGRG	3 cut(s)	20, 960, 1086
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	1491, 2156
BspACI	CCGC	6 cut(s)	50, 68, 80, 691, 1159, 1720
BspANI	GGCC	6 cut(s)	35, 241, 436, 844, 1675, 1875
BspCNI	CTCAG	7 cut(s)	169, 418, 559, 1356, 1381, 1489, 1753
BspFNI	CGCG	1 cut(s)	1722
BspMAI	CTGCAG	2 cut(s)	304, 2104
BspMI	ACCTGC	1 cut(s)	2188
BspPI	GGATC	2 cut(s)	130, 339
BspQI	GCTCTTC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	3 cut(s)	242, 868, 1103
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	4 cut(s)	165, 473, 1304, 1876
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	6 cut(s)	36, 89, 258, 959, 1623, 2044
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	3 cut(s)	260, 1971, 2045
Bst4CI	ACNGT	9 cut(s)	103, 393, 400, 1124, 1311, 1549, 1634, 1978, 2030
Bst6I	CTCTTC	2 cut(s)	215, 729
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	2142
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	54, 846, 859, 1909
BstDEI	CTNAG	9 cut(s)	177, 426, 567, 758, 1343, 1368, 1476, 1483, 1761
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	1144, 1612, 1633
BstFNI	CGCG	1 cut(s)	1722
BstHHI	GCGC	1 cut(s)	1711
BstMAI	GTCTC	7 cut(s)	17, 79, 173, 424, 759, 1008, 1479
BstMCI	CGRYCG	2 cut(s)	36, 2162
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 845, 854, 2189
BstNI	CCWGG	3 cut(s)	260, 1971, 2045
BstNSI	RCATGY	1 cut(s)	674
BstPAI	GACNNNNGTC	1 cut(s)	1125
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	5 cut(s)	88, 258, 1622, 1969, 2043
BstSFI	CTRYAG	7 cut(s)	300, 1690, 1813, 1852, 2004, 2100, 2169
BstSLI	GKGCMC	1 cut(s)	2156
BstSNI	TACGTA	1 cut(s)	2142
BstUI	CGCG	1 cut(s)	1722
BstV1I	GCAGC	4 cut(s)	286, 1631, 1661, 1723
BstV2I	GAAGAC	2 cut(s)	300, 1305
BstX2I	RGATCY	3 cut(s)	135, 539, 1738
BstXI	CCANNNNNNTGG	1 cut(s)	1124
BstYI	RGATCY	3 cut(s)	135, 539, 1738
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	1246
BsuRI	GGCC	6 cut(s)	35, 241, 436, 844, 1675, 1875
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	1737
BtsCI	GGATG	3 cut(s)	1144, 1612, 1633
BtsI	GCAGTG	1 cut(s)	2097
BtsIMutI	CAGTG	7 cut(s)	396, 594, 1129, 1484, 1545, 1873, 2097
BveI	ACCTGC	1 cut(s)	2188
Cac8I	GCNNGC	4 cut(s)	54, 846, 859, 1909
CaiI	CAGNNNCTG	1 cut(s)	1976
CfoI	GCGC	1 cut(s)	1711
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	239, 434, 723
CseI	GACGC	2 cut(s)	45, 190
CsiI	ACCWGGT	1 cut(s)	1969
Csp6I	GTAC	7 cut(s)	394, 814, 1307, 1340, 1660, 1974, 2143
CviAII	CATG	8 cut(s)	217, 671, 1118, 1168, 1778, 1904, 2033, 2072
CviQI	GTAC	7 cut(s)	394, 814, 1307, 1340, 1660, 1974, 2143
DdeI	CTNAG	9 cut(s)	177, 426, 567, 758, 1343, 1368, 1476, 1483, 1761
DraI	TTTAAA	1 cut(s)	1894
EaeI	YGGCCR	3 cut(s)	33, 842, 1673
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	215, 729
EarI	CTCTTC	2 cut(s)	215, 729
EclXI	CGGCCG	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	2142
Eco24I	GRGCYC	1 cut(s)	1491
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	723
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	1370
Eco88I	CYCGRG	3 cut(s)	20, 960, 1086
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	3 cut(s)	258, 1969, 2043
EcoT38I	GRGCYC	1 cut(s)	1491
Esp3I	CGTCTC	3 cut(s)	17, 173, 1008
FaeI	CATG	8 cut(s)	220, 674, 1121, 1171, 1781, 1907, 2036, 2075
FalI	AAGNNNNNCTT	4 cut(s)	668, 700, 1014, 1046
FaqI	GGGAC	2 cut(s)	112, 977
FatI	CATG	8 cut(s)	216, 670, 1117, 1167, 1777, 1903, 2032, 2071
FauI	CCCGC	1 cut(s)	684
FbaI	TGATCA	1 cut(s)	1924
Fnu4HI	GCNGC	5 cut(s)	50, 300, 1620, 1650, 1712
FokI	GGATG	3 cut(s)	1131, 1599, 1640
FriOI	GRGCYC	1 cut(s)	1491
Fsp4HI	GCNGC	5 cut(s)	50, 300, 1620, 1650, 1712
FspBI	CTAG	2 cut(s)	449, 938
GlaI	GCGC	1 cut(s)	1710
GluI	GCNGC	5 cut(s)	50, 300, 1620, 1650, 1712
GsuI	CTGGAG	2 cut(s)	490, 1213
HaeIII	GGCC	6 cut(s)	35, 241, 436, 844, 1675, 1875
HapII	CCGG	3 cut(s)	53, 89, 1623
HgaI	GACGC	2 cut(s)	45, 190
HhaI	GCGC	1 cut(s)	1711
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	8 cut(s)	220, 674, 1121, 1171, 1781, 1907, 2036, 2075
Hin6I	GCGC	1 cut(s)	1709
HinP1I	GCGC	1 cut(s)	1709
HincII	GTYRAC	3 cut(s)	15, 953, 1984
HindII	GTYRAC	3 cut(s)	15, 953, 1984
HinfI	GANTC	6 cut(s)	850, 866, 1025, 1421, 2040, 2094
HpaII	CCGG	3 cut(s)	53, 89, 1623
HphI	GGTGA	5 cut(s)	82, 160, 464, 574, 1709
Hpy166II	GTNNAC	7 cut(s)	15, 396, 880, 953, 1660, 1984, 2154
Hpy188I	TCNGA	4 cut(s)	178, 1371, 1762, 1944
Hpy8I	GTNNAC	7 cut(s)	15, 396, 880, 953, 1660, 1984, 2154
Hpy99I	CGWCG	3 cut(s)	31, 34, 1840
HpyAV	CCTTC	5 cut(s)	58, 449, 1759, 1819, 1865
HpyCH4III	ACNGT	9 cut(s)	103, 393, 400, 1124, 1311, 1549, 1634, 1978, 2030
HpyCH4IV	ACGT	2 cut(s)	955, 2141
HpyCH4V	TGCA	7 cut(s)	302, 670, 796, 1204, 2102, 2113, 2154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 845, 854, 2189
HpyF3I	CTNAG	9 cut(s)	177, 426, 567, 758, 1343, 1368, 1476, 1483, 1761
HpySE526I	ACGT	2 cut(s)	955, 2141
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	8 cut(s)	220, 674, 1121, 1171, 1781, 1907, 2036, 2075
HspAI	GCGC	1 cut(s)	1709
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	1924
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	4, 1598
Lsp1109I	GCAGC	4 cut(s)	286, 1631, 1661, 1723
LweI	GCATC	4 cut(s)	134, 1548, 1723, 1909
MabI	ACCWGGT	1 cut(s)	1969
MaeI	CTAG	2 cut(s)	449, 938
MaeII	ACGT	2 cut(s)	955, 2141
MaeIII	GTNAC	7 cut(s)	103, 562, 636, 925, 1567, 1606, 1681
MfeI	CAATTG	2 cut(s)	1698, 2195
MflI	RGATCY	3 cut(s)	135, 539, 1738
MhlI	GDGCHC	2 cut(s)	1491, 2156
MlsI	TGGCCA	2 cut(s)	844, 1675
MluNI	TGGCCA	2 cut(s)	844, 1675
Mox20I	TGGCCA	2 cut(s)	844, 1675
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	52
MscI	TGGCCA	2 cut(s)	844, 1675
MslI	CAYNNNNRTG	5 cut(s)	560, 669, 1122, 1722, 2070
Msp20I	TGGCCA	2 cut(s)	844, 1675
MspI	CCGG	3 cut(s)	53, 89, 1623
MspR9I	CCNGG	5 cut(s)	90, 260, 1624, 1971, 2045
MunI	CAATTG	2 cut(s)	1698, 2195
MvaI	CCWGG	3 cut(s)	260, 1971, 2045
MvnI	CGCG	1 cut(s)	1722
MwoI	GCNNNNNNNGC	4 cut(s)	222, 845, 854, 2189
NaeI	GCCGGC	1 cut(s)	54
NciI	CCSGG	2 cut(s)	90, 1624
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	8 cut(s)	220, 674, 1121, 1171, 1781, 1907, 2036, 2075
NmuCI	GTSAC	4 cut(s)	562, 925, 1567, 1681
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	2 cut(s)	20, 1086
PaqCI	CACCTGC	1 cut(s)	2188
PciSI	GCTCTTC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	6 cut(s)	850, 866, 1025, 1421, 2040, 2094
Pfl23II	CGTACG	1 cut(s)	2142
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	51, 301, 1621, 1651, 1713
Ple19I	CGATCG	1 cut(s)	2162
Ppu21I	YACGTR	1 cut(s)	2142
PshAI	GACNNNNGTC	1 cut(s)	1125
PsiI	TTATAA	1 cut(s)	1034
Psp6I	CCWGG	3 cut(s)	258, 1969, 2043
PspEI	GGTNACC	1 cut(s)	103
PspGI	CCWGG	3 cut(s)	258, 1969, 2043
PspLI	CGTACG	1 cut(s)	2142
PspPI	GGNCC	3 cut(s)	239, 434, 723
PspXI	VCTCGAGB	1 cut(s)	1086
PsrI	GAACNNNNNNTAC	2 cut(s)	1438, 1470
PstI	CTGCAG	2 cut(s)	304, 2104
PstNI	CAGNNNCTG	1 cut(s)	1976
PsuI	RGATCY	3 cut(s)	135, 539, 1738
PvuI	CGATCG	1 cut(s)	2162
RsaI	GTAC	7 cut(s)	395, 815, 1308, 1341, 1661, 1975, 2144
RsaNI	GTAC	7 cut(s)	394, 814, 1307, 1340, 1660, 1974, 2143
RseI	CAYNNNNRTG	5 cut(s)	560, 669, 1122, 1722, 2070
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	5 cut(s)	50, 300, 1620, 1650, 1712
Sau96I	GGNCC	3 cut(s)	239, 434, 723
ScrFI	CCNGG	5 cut(s)	90, 260, 1624, 1971, 2045
SduI	GDGCHC	2 cut(s)	1491, 2156
SexAI	ACCWGGT	1 cut(s)	1969
SfaNI	GCATC	4 cut(s)	134, 1548, 1723, 1909
SfcI	CTRYAG	7 cut(s)	300, 1690, 1813, 1852, 2004, 2100, 2169
Sfr274I	CTCGAG	2 cut(s)	20, 1086
SfuI	TTCGAA	1 cut(s)	320
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	723
SlaI	CTCGAG	2 cut(s)	20, 1086
SmiMI	CAYNNNNRTG	5 cut(s)	560, 669, 1122, 1722, 2070
SmlI	CTYRAG	2 cut(s)	20, 1086
SmoI	CTYRAG	2 cut(s)	20, 1086
SnaBI	TACGTA	1 cut(s)	2142
SsiI	CCGC	6 cut(s)	50, 68, 80, 691, 1159, 1720
SspI	AATATT	3 cut(s)	800, 1520, 1963
SspMI	CTAG	2 cut(s)	449, 938
StyD4I	CCNGG	5 cut(s)	88, 258, 1622, 1969, 2043
TaaI	ACNGT	9 cut(s)	103, 393, 400, 1124, 1311, 1549, 1634, 1978, 2030
TaiI	ACGT	2 cut(s)	958, 2144
TaqI	TCGA	9 cut(s)	21, 62, 320, 334, 1087, 1254, 1275, 1734, 1838
TaqII	GACCGA	1 cut(s)	1586
TatI	WGTACW	4 cut(s)	393, 813, 1306, 1659
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	6 cut(s)	850, 866, 1025, 1421, 2040, 2094
TscAI	CASTG	7 cut(s)	403, 601, 1129, 1484, 1552, 1873, 2104
TseFI	GTSAC	4 cut(s)	562, 925, 1567, 1681
TseI	GCWGC	4 cut(s)	299, 1619, 1649, 1711
Tsp45I	GTSAC	4 cut(s)	562, 925, 1567, 1681
TspDTI	ATGAA	6 cut(s)	167, 233, 1133, 1413, 1740, 1766
TspGWI	ACGGA	1 cut(s)	1682
TspRI	CASTG	7 cut(s)	403, 601, 1129, 1484, 1552, 1873, 2104
Van91I	CCANNNNNTGG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	2152
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	4 cut(s)	198, 338, 1043, 2009
XceI	RCATGY	1 cut(s)	674
XhoI	CTCGAG	2 cut(s)	20, 1086
XspI	CTAG	2 cut(s)	449, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.