Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

61134257 .. 61245734

Gene Structure 111478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGTCCGGCGCTCGCTCGACTCAGACTCCTGCTTATTCTCCACCAGCGGCCTTGTCAAGTTCGGCTCCTCCGGTGGCCTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTCGAGACCGGGGTTCGGGACGGTTGGGAGGTGATGAACCAACTGGTTCGTTTGTATTCCGAGACGCATTTAGACAAGAGAATTCCTGCTTATGAAGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTTGTCAAATTACTTCTAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGGTTATTGCTCATTGCTCGAGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAATTTAAGAGTAGTTACACAATCAATGGACTATCTGCAGAACCATTGGGACAATTAAGGCCTACTTGTGAAGATGAGGACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCGATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTCATCCCCAGATGGGGCAGTGGAACATGACAAACAAGGAGTTTTCTCCCCAACCCTTGCTTCCGGTACGGTCTTCTCATTCTGGACAAATTGAGAGGGTACTCAGCGATATTCACAATTTGTCTGCTCAGAAAGGAAGACAACTTCAGTTCTTGATTGTCATTTTGCCTGATAAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTCCCCACAATTATATTTGGAGCATATGTTACTCATCCAGCAGCCGGGGATGACAGTAGCCCATCAATAGCAGCAGTCGTTGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCATTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTCTGTTACATGAGGTGGATGCTATAAGAAGGGCCTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

616

Amino Acids

69.14

Weight (kDa)

9.11

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	46 - 127	1.5e-06	N-terminal domain of argonaute
PAZ	PF02170	115 - 203	5.2e-13	PAZ domain
Piwi	PF02171	263 - 581	1.2e-106	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	987
AarI	CACCTGC	1 cut(s)	1705
Acc36I	ACCTGC	1 cut(s)	1705
AccIII	TCCGGA	1 cut(s)	1807
AciI	CCGC	2 cut(s)	47, 364
AclI	AACGTT	1 cut(s)	1394
AcoI	YGGCCR	2 cut(s)	548, 1109
AcsI	RAATTY	3 cut(s)	192, 410, 1526
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	6 cut(s)	521, 702, 735, 1407, 1492, 1661
AfiI	CCNNNNNNNGG	5 cut(s)	126, 363, 647, 648, 1058
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	5 cut(s)	312, 361, 560, 576, 1484
AjnI	CCWGG	2 cut(s)	1486, 1560
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AloI	GAACNNNNNNTCC	2 cut(s)	1558, 1590
AluBI	AGCT	5 cut(s)	299, 545, 563, 601, 1721
AluI	AGCT	5 cut(s)	299, 545, 563, 601, 1721
Alw21I	GWGCWC	3 cut(s)	1673, 1732, 1789
Alw26I	GTCTC	3 cut(s)	110, 167, 873
Alw44I	GTGCAC	2 cut(s)	1669, 1785
AlwNI	CAGNNNCTG	1 cut(s)	1493
Ama87I	CYCGRG	2 cut(s)	113, 342
Aor13HI	TCCGGA	1 cut(s)	1807
AoxI	GGCC	8 cut(s)	48, 75, 233, 467, 548, 1109, 1306, 1353
ApaLI	GTGCAC	2 cut(s)	1669, 1785
ApeKI	GCWGC	6 cut(s)	293, 296, 299, 1055, 1085, 1147
ApoI	RAATTY	3 cut(s)	192, 410, 1526
AspLEI	GCGC	2 cut(s)	11, 1147
AspS9I	GGNCC	3 cut(s)	233, 396, 1353
AsuC2I	CCSGG	2 cut(s)	121, 1060
AsuHPI	GGTGA	3 cut(s)	154, 1145, 1760
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	113, 342
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	1673, 1789
BaeI	ACNNNNGTAYC	2 cut(s)	1482, 1515
BalI	TGGCCA	2 cut(s)	550, 1111
BanII	GRGCYC	2 cut(s)	885, 1804
BbsI	GAAGAC	3 cut(s)	300, 699, 778
Bbv12I	GWGCWC	3 cut(s)	1673, 1732, 1789
BbvI	GCAGC	6 cut(s)	280, 286, 308, 1067, 1097, 1159
BccI	CCATC	8 cut(s)	88, 278, 640, 1084, 1286, 1456, 1616, 1754
BceAI	ACGGC	3 cut(s)	1252, 1557, 1748
BcgI	CGANNNNNNTGC	6 cut(s)	491, 525, 1122, 1156, 1406, 1440
BciT130I	CCWGG	2 cut(s)	1488, 1562
BclI	TGATCA	1 cut(s)	1441
BcnI	CCSGG	2 cut(s)	121, 1060
BcoDI	GTCTC	3 cut(s)	110, 167, 873
BfmI	CTRYAG	8 cut(s)	294, 300, 444, 1126, 1246, 1285, 1521, 1686
BfoI	RGCGCY	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	1705
BglII	AGATCT	1 cut(s)	1174
BisI	GCNGC	7 cut(s)	48, 294, 297, 300, 1056, 1086, 1148
BlsI	GCNGC	7 cut(s)	49, 295, 298, 301, 1057, 1087, 1149
Bme1390I	CCNGG	4 cut(s)	121, 1060, 1488, 1562
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	2 cut(s)	113, 342
BmgT120I	GGNCC	3 cut(s)	233, 396, 1353
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	4 cut(s)	121, 1060, 1488, 1562
BmsI	GCATC	5 cut(s)	967, 984, 1159, 1330, 1426
BoxI	GACNNNNGTC	1 cut(s)	618
BpiI	GAAGAC	3 cut(s)	300, 699, 778
BplI	GAGNNNNNCTC	2 cut(s)	1736, 1768
Bpu14I	TTCGAA	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	121, 1060
BsaAI	YACGTR	1 cut(s)	1659
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	120, 252, 1059, 1561
BsaWI	WCCGGW	3 cut(s)	70, 697, 1807
BsaXI	ACNNNNNCTCC	8 cut(s)	10, 40, 89, 119, 1026, 1056, 1779, 1809
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 363, 647, 648, 1058
Bse1I	ACTGG	4 cut(s)	159, 398, 1309, 1780
Bse3DI	GCAATG	4 cut(s)	236, 336, 574, 1236
BseAI	TCCGGA	1 cut(s)	1807
BseBI	CCWGG	2 cut(s)	1488, 1562
BseDI	CCNNGG	4 cut(s)	120, 252, 1059, 1561
BseGI	GGATG	5 cut(s)	637, 1048, 1069, 1345, 1754
BseLI	CCNNNNNNNGG	5 cut(s)	126, 363, 647, 648, 1058
BseMI	GCAATG	4 cut(s)	236, 336, 574, 1236
BseMII	CTCAG	6 cut(s)	35, 74, 751, 776, 884, 1185
BseNI	ACTGG	4 cut(s)	159, 398, 1309, 1780
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	2 cut(s)	1673, 1789
BseXI	GCAGC	6 cut(s)	280, 286, 308, 1067, 1097, 1159
Bsh1285I	CGRYCG	2 cut(s)	1012, 1679
BshFI	GGCC	8 cut(s)	50, 77, 235, 469, 550, 1111, 1308, 1355
BsiEI	CGRYCG	2 cut(s)	1012, 1679
BsiHKAI	GWGCWC	3 cut(s)	1673, 1732, 1789
BsiHKCI	CYCGRG	2 cut(s)	113, 342
BsiSI	CCGG	6 cut(s)	6, 71, 120, 698, 1059, 1808
BsiWI	CGTACG	1 cut(s)	1659
BslFI	GGGAC	3 cut(s)	143, 404, 471
BslI	CCNNNNNNNGG	5 cut(s)	126, 363, 647, 648, 1058
BsmAI	GTCTC	3 cut(s)	110, 167, 873
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	3 cut(s)	143, 404, 471
BsnI	GGCC	8 cut(s)	50, 77, 235, 469, 550, 1111, 1308, 1355
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	2 cut(s)	113, 342
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	5 cut(s)	885, 1673, 1732, 1789, 1804
Bsp13I	TCCGGA	1 cut(s)	1807
Bsp143I	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
BspACI	CCGC	2 cut(s)	47, 364
BspANI	GGCC	8 cut(s)	50, 77, 235, 469, 550, 1111, 1308, 1355
BspCNI	CTCAG	6 cut(s)	34, 75, 750, 775, 883, 1186
BspEI	TCCGGA	1 cut(s)	1807
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	3 cut(s)	298, 304, 448
BspMI	ACCTGC	1 cut(s)	1705
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	4 cut(s)	236, 336, 574, 1236
BsrI	ACTGG	4 cut(s)	159, 398, 1309, 1780
BssECI	CCNNGG	4 cut(s)	120, 252, 1059, 1561
BssMI	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	1488, 1562
Bst4CI	ACNGT	9 cut(s)	134, 617, 705, 967, 1070, 1157, 1390, 1495, 1547
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstBAI	YACGTR	1 cut(s)	1659
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	13, 552, 565
BstDEI	CTNAG	7 cut(s)	21, 83, 737, 762, 870, 877, 1194
BstF5I	GGATG	5 cut(s)	637, 1048, 1069, 1345, 1754
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 1147
BstKTI	GATC	8 cut(s)	532, 834, 939, 1012, 1177, 1444, 1679, 1815
BstMAI	GTCTC	3 cut(s)	110, 167, 873
BstMBI	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
BstMCI	CGRYCG	2 cut(s)	1012, 1679
BstMWI	GCNNNNNNNGC	8 cut(s)	216, 299, 551, 560, 598, 1094, 1706, 1727
BstNI	CCWGG	2 cut(s)	1488, 1562
BstPAI	GACNNNNGTC	1 cut(s)	618
BstSCI	CCNGG	4 cut(s)	119, 1058, 1486, 1560
BstSFI	CTRYAG	8 cut(s)	294, 300, 444, 1126, 1246, 1285, 1521, 1686
BstSLI	GKGCMC	2 cut(s)	1673, 1789
BstSNI	TACGTA	1 cut(s)	1659
BstV1I	GCAGC	6 cut(s)	280, 286, 308, 1067, 1097, 1159
BstV2I	GAAGAC	3 cut(s)	300, 699, 778
BstX2I	RGATCY	1 cut(s)	1174
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	1174
BsuRI	GGCC	8 cut(s)	50, 77, 235, 469, 550, 1111, 1308, 1355
BtsCI	GGATG	5 cut(s)	637, 1048, 1069, 1345, 1754
BtsI	GCAGTG	2 cut(s)	659, 1614
BtsIMutI	CAGTG	6 cut(s)	622, 659, 878, 963, 1306, 1614
BveI	ACCTGC	1 cut(s)	1705
Cac8I	GCNNGC	3 cut(s)	13, 552, 565
CaiI	CAGNNNCTG	1 cut(s)	1493
CfoI	GCGC	2 cut(s)	11, 1147
Cfr13I	GGNCC	3 cut(s)	233, 396, 1353
CseI	GACGC	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	1486
Csp6I	GTAC	6 cut(s)	520, 701, 734, 1406, 1491, 1660
CviAII	CATG	7 cut(s)	211, 611, 661, 1211, 1331, 1550, 1589
CviQI	GTAC	6 cut(s)	520, 701, 734, 1406, 1491, 1660
DdeI	CTNAG	7 cut(s)	21, 83, 737, 762, 870, 877, 1194
DpnI	GATC	8 cut(s)	531, 833, 938, 1011, 1176, 1443, 1678, 1814
DpnII	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
DraI	TTTAAA	1 cut(s)	972
EaeI	YGGCCR	2 cut(s)	548, 1109
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco105I	TACGTA	1 cut(s)	1659
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	885, 1804
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	764
Eco88I	CYCGRG	2 cut(s)	113, 342
EcoO109I	RGGNCCY	1 cut(s)	1353
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	1486, 1560
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	885, 1804
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	7 cut(s)	214, 614, 664, 1214, 1334, 1553, 1592
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 457, 489
FaqI	GGGAC	3 cut(s)	143, 404, 471
FatI	CATG	7 cut(s)	210, 610, 660, 1210, 1330, 1549, 1588
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	1039
FbaI	TGATCA	1 cut(s)	1441
Fnu4HI	GCNGC	7 cut(s)	48, 294, 297, 300, 1056, 1086, 1148
FokI	GGATG	5 cut(s)	624, 1035, 1076, 1352, 1741
FriOI	GRGCYC	2 cut(s)	885, 1804
Fsp4HI	GCNGC	7 cut(s)	48, 294, 297, 300, 1056, 1086, 1148
GlaI	GCGC	2 cut(s)	10, 1146
GluI	GCNGC	7 cut(s)	48, 294, 297, 300, 1056, 1086, 1148
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	8 cut(s)	50, 77, 235, 469, 550, 1111, 1308, 1355
HapII	CCGG	6 cut(s)	6, 71, 120, 698, 1059, 1808
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	11, 1147
Hin1II	CATG	7 cut(s)	214, 614, 664, 1214, 1334, 1553, 1592
Hin6I	GCGC	2 cut(s)	9, 1145
HinP1I	GCGC	2 cut(s)	9, 1145
HincII	GTYRAC	2 cut(s)	108, 1501
HindII	GTYRAC	2 cut(s)	108, 1501
HinfI	GANTC	8 cut(s)	19, 25, 556, 572, 815, 1557, 1611, 1751
HpaII	CCGG	6 cut(s)	6, 71, 120, 698, 1059, 1808
HphI	GGTGA	3 cut(s)	154, 1145, 1760
Hpy166II	GTNNAC	6 cut(s)	108, 586, 956, 1501, 1671, 1787
Hpy188I	TCNGA	7 cut(s)	24, 172, 765, 1195, 1461, 1759, 1799
Hpy188III	TCNNGA	7 cut(s)	115, 128, 623, 717, 787, 1272, 1808
Hpy8I	GTNNAC	6 cut(s)	108, 586, 956, 1501, 1671, 1787
Hpy99I	CGWCG	1 cut(s)	1273
HpyAV	CCTTC	8 cut(s)	200, 940, 1192, 1252, 1298, 1344, 1367, 1814
HpyCH4III	ACNGT	9 cut(s)	134, 617, 705, 967, 1070, 1157, 1390, 1495, 1547
HpyCH4IV	ACGT	2 cut(s)	1394, 1658
HpyCH4V	TGCA	8 cut(s)	296, 302, 446, 502, 980, 1630, 1671, 1787
HpyF10VI	GCNNNNNNNGC	8 cut(s)	216, 299, 551, 560, 598, 1094, 1706, 1727
HpyF3I	CTNAG	7 cut(s)	21, 83, 737, 762, 870, 877, 1194
HpySE526I	ACGT	2 cut(s)	1394, 1658
Hsp92II	CATG	7 cut(s)	214, 614, 664, 1214, 1334, 1553, 1592
HspAI	GCGC	2 cut(s)	9, 1145
Kpn2I	TCCGGA	1 cut(s)	1807
Ksp22I	TGATCA	1 cut(s)	1441
Kzo9I	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	4 cut(s)	70, 97, 598, 1034
Lsp1109I	GCAGC	6 cut(s)	280, 286, 308, 1067, 1097, 1159
LweI	GCATC	5 cut(s)	967, 984, 1159, 1330, 1426
MabI	ACCWGGT	1 cut(s)	1486
MaeII	ACGT	2 cut(s)	1394, 1658
MaeIII	GTNAC	7 cut(s)	422, 1003, 1042, 1117, 1326, 1390, 1748
MalI	GATC	8 cut(s)	531, 833, 938, 1011, 1176, 1443, 1678, 1814
MboI	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	1 cut(s)	1174
MhlI	GDGCHC	5 cut(s)	885, 1673, 1732, 1789, 1804
MlsI	TGGCCA	2 cut(s)	550, 1111
MluNI	TGGCCA	2 cut(s)	550, 1111
MlyI	GAGTC	3 cut(s)	13, 19, 1745
Mox20I	TGGCCA	2 cut(s)	550, 1111
MroI	TCCGGA	1 cut(s)	1807
MscI	TGGCCA	2 cut(s)	550, 1111
MseI	TTAA	8 cut(s)	386, 414, 464, 603, 933, 971, 1262, 1637
MslI	CAYNNNNRTG	4 cut(s)	615, 1155, 1158, 1587
Msp20I	TGGCCA	2 cut(s)	550, 1111
MspA1I	CMGCKG	2 cut(s)	47, 299
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	6 cut(s)	6, 71, 120, 698, 1059, 1808
MspR9I	CCNGG	4 cut(s)	121, 1060, 1488, 1562
MunI	CAATTG	1 cut(s)	1134
MvaI	CCWGG	2 cut(s)	1488, 1562
MwoI	GCNNNNNNNGC	8 cut(s)	216, 299, 551, 560, 598, 1094, 1706, 1727
NciI	CCSGG	2 cut(s)	121, 1060
NdeI	CATATG	1 cut(s)	1039
NdeII	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
NlaIII	CATG	7 cut(s)	214, 614, 664, 1214, 1334, 1553, 1592
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	1003, 1117, 1748
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	2 cut(s)	113, 342
PaqCI	CACCTGC	1 cut(s)	1705
PceI	AGGCCT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	209
PfeI	GAWTC	5 cut(s)	556, 572, 815, 1557, 1611
Pfl23II	CGTACG	1 cut(s)	1659
PkrI	GCNGC	7 cut(s)	49, 295, 298, 301, 1057, 1087, 1149
Ple19I	CGATCG	2 cut(s)	1012, 1679
PleI	GAGTC	3 cut(s)	13, 19, 1745
PpsI	GAGTC	3 cut(s)	13, 19, 1745
Ppu21I	YACGTR	1 cut(s)	1659
PshAI	GACNNNNGTC	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	1394
Psp6I	CCWGG	2 cut(s)	1486, 1560
PspGI	CCWGG	2 cut(s)	1486, 1560
PspLI	CGTACG	1 cut(s)	1659
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	3 cut(s)	233, 396, 1353
PspXI	VCTCGAGB	1 cut(s)	342
PstI	CTGCAG	3 cut(s)	298, 304, 448
PstNI	CAGNNNCTG	1 cut(s)	1493
PsuI	RGATCY	1 cut(s)	1174
PvuI	CGATCG	2 cut(s)	1012, 1679
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	6 cut(s)	521, 702, 735, 1407, 1492, 1661
RsaNI	GTAC	6 cut(s)	520, 701, 734, 1406, 1491, 1660
RseI	CAYNNNNRTG	4 cut(s)	615, 1155, 1158, 1587
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	8 cut(s)	386, 414, 464, 603, 933, 971, 1262, 1637
SatI	GCNGC	7 cut(s)	48, 294, 297, 300, 1056, 1086, 1148
Sau3AI	GATC	8 cut(s)	529, 831, 936, 1009, 1174, 1441, 1676, 1812
Sau96I	GGNCC	3 cut(s)	233, 396, 1353
SchI	GAGTC	3 cut(s)	13, 19, 1745
ScrFI	CCNGG	4 cut(s)	121, 1060, 1488, 1562
SduI	GDGCHC	5 cut(s)	885, 1673, 1732, 1789, 1804
SexAI	ACCWGGT	1 cut(s)	1486
SfaNI	GCATC	5 cut(s)	967, 984, 1159, 1330, 1426
SfcI	CTRYAG	8 cut(s)	294, 300, 444, 1126, 1246, 1285, 1521, 1686
Sfr274I	CTCGAG	2 cut(s)	113, 342
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	396
SlaI	CTCGAG	2 cut(s)	113, 342
SmiMI	CAYNNNNRTG	4 cut(s)	615, 1155, 1158, 1587
SmlI	CTYRAG	3 cut(s)	113, 342, 932
SmoI	CTYRAG	3 cut(s)	113, 342, 932
SnaBI	TACGTA	1 cut(s)	1659
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	2 cut(s)	47, 364
SspI	AATATT	3 cut(s)	506, 914, 1480
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	119, 1058, 1486, 1560
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	9 cut(s)	134, 617, 705, 967, 1070, 1157, 1390, 1495, 1547
TaiI	ACGT	2 cut(s)	1397, 1661
TaqI	TCGA	6 cut(s)	17, 114, 320, 343, 1271, 1726
TaqII	GACCGA	1 cut(s)	1022
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	556, 572, 815, 1557, 1611
Tru1I	TTAA	8 cut(s)	386, 414, 464, 603, 933, 971, 1262, 1637
Tru9I	TTAA	8 cut(s)	386, 414, 464, 603, 933, 971, 1262, 1637
TscAI	CASTG	6 cut(s)	622, 659, 878, 970, 1306, 1621
TseFI	GTSAC	3 cut(s)	1003, 1117, 1748
TseI	GCWGC	6 cut(s)	293, 296, 299, 1055, 1085, 1147
Tsp45I	GTSAC	3 cut(s)	1003, 1117, 1748
TspDTI	ATGAA	7 cut(s)	161, 219, 227, 626, 807, 1176, 1199
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	6 cut(s)	622, 659, 878, 970, 1306, 1621
Vha464I	CTTAAG	1 cut(s)	932
VneI	GTGCAC	2 cut(s)	1669, 1785
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	3 cut(s)	192, 410, 1526
XhoI	CTCGAG	2 cut(s)	113, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.