Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59492216 .. 59497381

Gene Structure 5166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2832 bp

ATGTCAGGGCGCGGCGGCCGAGGCCGGCATTATTCCGGCGCTCGATCTAATCCATCGCAGGGCGGAGGCGGCGGAGGAAGTTCAGGCGCCGGGACTCAGACTCCTGCTTATTCTCCACCAGCGGCCTCGTCAAGTTCGGCTCCTCCGGTGCCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGCAGACGACGACGGACGTGGCTGTCGTGCAGCCGGCGTCGTCGAAGGCGGTGAGCTTTCCGAAGAGGCCGAATTTCGGGACGGTCGGCAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTACAGGTTGCAGACAGAGACGTTCACCATTACAATGTTACCATAACCCCAGAAGTTGCATCCAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTCCGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCCAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTACTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACGCCACAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGGGGGTTTTACCAAAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCCAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTGTCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAAAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCCGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATTACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAAAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTATTTATCCCCAGATGGGTCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGATTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTTTGAGTTTCTTGGGGCTTTGGTTGATGTGTGCAACAGTAAGGGGATGGAGTTTTTTCCCGAACCCCTGCTTCCAGTACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCAGCTCAGCAAGGACGACAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCCTAGAGCCCCAGAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCACTTCCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCCGCCGGGGATGACAGTAGCCCATCAATTGCAGCAGTCGTTGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCATTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGCCTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

943

Amino Acids

105.98

Weight (kDa)

9.42

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	93 - 235	1.3e-36	N-terminal domain of argonaute
ArgoL1	PF08699	246 - 294	2.6e-18	Argonaute linker 1 domain
PAZ	PF02170	319 - 430	3.9e-25	PAZ domain
ArgoL2	PF16488	440 - 490	4.1e-10	Argonaute linker 2 domain
ArgoMid	PF16487	501 - 578	1.9e-09	Mid domain of argonaute
Piwi	PF02171	590 - 908	1e-107	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1388, 1968
AarI	CACCTGC	1 cut(s)	2686
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	2686
AccB1I	GGYRCC	2 cut(s)	86, 148
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	2788
AciI	CCGC	9 cut(s)	12, 15, 63, 69, 72, 122, 236, 988, 2037
AclI	AACGTT	1 cut(s)	2375
AclWI	GGATC	2 cut(s)	373, 588
AcoI	YGGCCR	3 cut(s)	16, 1172, 2090
AcsI	RAATTY	5 cut(s)	259, 282, 441, 1397, 2507
AcuI	CTGAAG	1 cut(s)	1745
AcyI	GRCGYC	2 cut(s)	87, 224
AfaI	GTAC	9 cut(s)	312, 541, 728, 1145, 1683, 1716, 2388, 2473, 2642
AfiI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 987, 1508, 2039
AflII	CTTAAG	1 cut(s)	1913
AgsI	TTSAA	8 cut(s)	287, 561, 665, 884, 985, 1184, 1200, 2465
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	5 cut(s)	306, 501, 1696, 2467, 2541
AloI	GAACNNNNNNTCC	2 cut(s)	2539, 2571
Alw21I	GWGCWC	3 cut(s)	2654, 2713, 2770
Alw26I	GTCTC	4 cut(s)	321, 416, 1362, 1854
Alw44I	GTGCAC	2 cut(s)	2650, 2766
AlwI	GGATC	2 cut(s)	373, 588
AlwNI	CAGNNNCTG	1 cut(s)	2474
Ama87I	CYCGRG	2 cut(s)	1314, 1440
Aor13HI	TCCGGA	1 cut(s)	2788
ApaLI	GTGCAC	2 cut(s)	2650, 2766
ApeKI	GCWGC	5 cut(s)	217, 545, 548, 2066, 2128
ApoI	RAATTY	5 cut(s)	259, 282, 441, 1397, 2507
AspLEI	GCGC	4 cut(s)	12, 41, 89, 2128
AspS9I	GGNCC	5 cut(s)	406, 482, 767, 1020, 2334
AsuC2I	CCSGG	2 cut(s)	91, 2041
AsuHPI	GGTGA	8 cut(s)	250, 326, 403, 797, 907, 982, 2126, 2741
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	1314, 1440
AvaII	GGWCC	2 cut(s)	406, 1020
BaeGI	GKGCMC	2 cut(s)	2654, 2770
BaeI	ACNNNNGTAYC	2 cut(s)	2463, 2496
BalI	TGGCCA	2 cut(s)	1174, 2092
BanI	GGYRCC	2 cut(s)	86, 148
BanII	GRGCYC	2 cut(s)	1866, 2785
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	3 cut(s)	2654, 2713, 2770
BbvI	GCAGC	5 cut(s)	229, 535, 557, 2078, 2140
BceAI	ACGGC	3 cut(s)	2233, 2538, 2729
BcgI	CGANNNNNNTGC	6 cut(s)	1115, 1149, 2103, 2137, 2387, 2421
BciT130I	CCWGG	5 cut(s)	308, 503, 1698, 2469, 2543
BciVI	GTATCC	1 cut(s)	1600
BclI	TGATCA	2 cut(s)	1786, 2422
BcnI	CCSGG	2 cut(s)	91, 2041
BcoDI	GTCTC	4 cut(s)	321, 416, 1362, 1854
BfaI	CTAG	3 cut(s)	782, 839, 1859
BfmI	CTRYAG	9 cut(s)	188, 543, 549, 1068, 2107, 2227, 2266, 2502, 2667
BfoI	RGCGCY	2 cut(s)	42, 90
BfrI	CTTAAG	1 cut(s)	1913
BfuAI	ACCTGC	1 cut(s)	2686
BfuI	GTATCC	1 cut(s)	1600
BglII	AGATCT	2 cut(s)	872, 2155
BlpI	GCTNAGC	1 cut(s)	1743
Bme1390I	CCNGG	7 cut(s)	91, 308, 503, 1698, 2041, 2469, 2543
Bme18I	GGWCC	2 cut(s)	406, 1020
BmeT110I	CYCGRG	2 cut(s)	1314, 1440
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	5 cut(s)	406, 482, 767, 1020, 2334
BmiI	GGNNCC	3 cut(s)	88, 141, 150
BmrFI	CCNGG	7 cut(s)	91, 308, 503, 1698, 2041, 2469, 2543
BmsI	GCATC	6 cut(s)	377, 1948, 1965, 2140, 2311, 2407
BoxI	GACNNNNGTC	1 cut(s)	1479
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	4 cut(s)	1214, 1246, 2717, 2749
BpmI	CTGGAG	2 cut(s)	823, 1567
Bpu1102I	GCTNAGC	1 cut(s)	1743
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	2 cut(s)	91, 2041
BsaAI	YACGTR	1 cut(s)	2640
BsaHI	GRCGYC	2 cut(s)	87, 224
BsaJI	CCNNGG	5 cut(s)	19, 501, 1313, 2040, 2542
BsaWI	WCCGGW	2 cut(s)	145, 2788
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 115, 164, 194, 2007, 2037, 2760, 2790
Bsc4I	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 987, 1508, 2039
Bse118I	RCCGGY	2 cut(s)	24, 220
Bse1I	ACTGG	6 cut(s)	408, 806, 1022, 1679, 2290, 2761
Bse3DI	GCAATG	4 cut(s)	485, 1198, 1457, 2217
BseAI	TCCGGA	1 cut(s)	2788
BseBI	CCWGG	5 cut(s)	308, 503, 1698, 2469, 2543
BseDI	CCNNGG	5 cut(s)	19, 501, 1313, 2040, 2542
BseGI	GGATG	7 cut(s)	368, 1656, 1693, 2029, 2050, 2326, 2735
BseLI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 987, 1508, 2039
BseMI	GCAATG	4 cut(s)	485, 1198, 1457, 2217
BseMII	CTCAG	8 cut(s)	110, 149, 750, 891, 1732, 1757, 1865, 2166
BseNI	ACTGG	6 cut(s)	408, 806, 1022, 1679, 2290, 2761
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	2 cut(s)	2654, 2770
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	5 cut(s)	229, 535, 557, 2078, 2140
BseYI	CCCAGC	2 cut(s)	834, 939
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	3 cut(s)	19, 273, 2660
BshNI	GGYRCC	2 cut(s)	86, 148
BsiEI	CGRYCG	3 cut(s)	19, 273, 2660
BsiHKAI	GWGCWC	3 cut(s)	2654, 2713, 2770
BsiHKCI	CYCGRG	2 cut(s)	1314, 1440
BsiSI	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1242, 2040, 2789
BsiWI	CGTACG	1 cut(s)	2640
BslFI	GGGAC	5 cut(s)	106, 280, 1028, 1095, 1331
BslI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 987, 1508, 2039
BsmAI	GTCTC	4 cut(s)	321, 416, 1362, 1854
BsmBI	CGTCTC	3 cut(s)	321, 416, 1362
BsmFI	GGGAC	5 cut(s)	106, 280, 1028, 1095, 1331
BsoBI	CYCGRG	2 cut(s)	1314, 1440
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	5 cut(s)	1866, 2654, 2713, 2770, 2785
Bsp13I	TCCGGA	1 cut(s)	2788
Bsp1720I	GCTNAGC	1 cut(s)	1743
BspACI	CCGC	9 cut(s)	12, 15, 63, 69, 72, 122, 236, 988, 2037
BspCNI	CTCAG	8 cut(s)	109, 150, 751, 892, 1731, 1756, 1864, 2167
BspEI	TCCGGA	1 cut(s)	2788
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	88, 141, 150
BspMAI	CTGCAG	4 cut(s)	192, 547, 553, 1072
BspMI	ACCTGC	1 cut(s)	2686
BspPI	GGATC	2 cut(s)	373, 588
BspQI	GCTCTTC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	2 cut(s)	86, 148
BspTI	CTTAAG	1 cut(s)	1913
BsrDI	GCAATG	4 cut(s)	485, 1198, 1457, 2217
BsrFI	RCCGGY	2 cut(s)	24, 220
BsrI	ACTGG	6 cut(s)	408, 806, 1022, 1679, 2290, 2761
BssAI	RCCGGY	2 cut(s)	24, 220
BssECI	CCNNGG	5 cut(s)	19, 501, 1313, 2040, 2542
BssNI	GRCGYC	2 cut(s)	87, 224
Bst2UI	CCWGG	5 cut(s)	308, 503, 1698, 2469, 2543
Bst6I	CTCTTC	2 cut(s)	245, 458
BstACI	GRCGYC	2 cut(s)	87, 224
BstAFI	CTTAAG	1 cut(s)	1913
BstAPI	GCANNNNNTGC	1 cut(s)	2075
BstBAI	YACGTR	1 cut(s)	2640
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	5 cut(s)	26, 222, 656, 1176, 1189
BstDEI	CTNAG	9 cut(s)	96, 158, 704, 759, 900, 1718, 1743, 1851, 2175
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	7 cut(s)	368, 1656, 1693, 2029, 2050, 2326, 2735
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	42, 90
BstHHI	GCGC	4 cut(s)	12, 41, 89, 2128
BstMAI	GTCTC	4 cut(s)	321, 416, 1362, 1854
BstMCI	CGRYCG	3 cut(s)	19, 273, 2660
BstNI	CCWGG	5 cut(s)	308, 503, 1698, 2469, 2543
BstPAI	GACNNNNGTC	1 cut(s)	1479
BstSCI	CCNGG	7 cut(s)	89, 306, 501, 1696, 2039, 2467, 2541
BstSFI	CTRYAG	9 cut(s)	188, 543, 549, 1068, 2107, 2227, 2266, 2502, 2667
BstSLI	GKGCMC	2 cut(s)	2654, 2770
BstSNI	TACGTA	1 cut(s)	2640
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	229, 535, 557, 2078, 2140
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	3 cut(s)	378, 872, 2155
BstXI	CCANNNNNNTGG	1 cut(s)	1478
BstYI	RGATCY	3 cut(s)	378, 872, 2155
BstZI	CGGCCG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	1600
BtgZI	GCGATG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	7 cut(s)	368, 1656, 1693, 2029, 2050, 2326, 2735
BtsI	GCAGTG	2 cut(s)	185, 2595
BtsIMutI	CAGTG	9 cut(s)	185, 729, 927, 1483, 1520, 1859, 1944, 2287, 2595
BveI	ACCTGC	1 cut(s)	2686
Cac8I	GCNNGC	5 cut(s)	26, 222, 656, 1176, 1189
CaiI	CAGNNNCTG	1 cut(s)	2474
CfoI	GCGC	4 cut(s)	12, 41, 89, 2128
Cfr10I	RCCGGY	2 cut(s)	24, 220
Cfr13I	GGNCC	5 cut(s)	406, 482, 767, 1020, 2334
CseI	GACGC	2 cut(s)	213, 433
CsiI	ACCWGGT	1 cut(s)	2467
Csp6I	GTAC	9 cut(s)	311, 540, 727, 1144, 1682, 1715, 2387, 2472, 2641
CviAII	CATG	7 cut(s)	460, 1472, 1522, 2192, 2312, 2531, 2570
CviQI	GTAC	9 cut(s)	311, 540, 727, 1144, 1682, 1715, 2387, 2472, 2641
DdeI	CTNAG	9 cut(s)	96, 158, 704, 759, 900, 1718, 1743, 1851, 2175
DinI	GGCGCC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	1953
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	3 cut(s)	16, 1172, 2090
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	245, 458
EarI	CTCTTC	2 cut(s)	245, 458
EciI	GGCGGA	2 cut(s)	78, 87
EclXI	CGGCCG	1 cut(s)	16
Eco105I	TACGTA	1 cut(s)	2640
Eco24I	GRGCYC	2 cut(s)	1866, 2785
Eco47I	GGWCC	2 cut(s)	406, 1020
Eco52I	CGGCCG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	1745
Eco88I	CYCGRG	2 cut(s)	1314, 1440
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	2334
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	5 cut(s)	306, 501, 1696, 2467, 2541
EcoT38I	GRGCYC	2 cut(s)	1866, 2785
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	3 cut(s)	321, 416, 1362
FaeI	CATG	7 cut(s)	463, 1475, 1525, 2195, 2315, 2534, 2573
FalI	AAGNNNNNCTT	6 cut(s)	965, 997, 1081, 1113, 1368, 1400
FaqI	GGGAC	5 cut(s)	106, 280, 1028, 1095, 1331
FatI	CATG	7 cut(s)	459, 1471, 1521, 2191, 2311, 2530, 2569
FauI	CCCGC	1 cut(s)	981
FbaI	TGATCA	2 cut(s)	1786, 2422
FblI	GTMKAC	1 cut(s)	823
FokI	GGATG	7 cut(s)	355, 1663, 1680, 2016, 2057, 2333, 2722
FriOI	GRGCYC	2 cut(s)	1866, 2785
FspBI	CTAG	3 cut(s)	782, 839, 1859
GlaI	GCGC	4 cut(s)	11, 40, 88, 2127
GsaI	CCCAGC	2 cut(s)	838, 943
GsuI	CTGGAG	2 cut(s)	823, 1567
HaeII	RGCGCY	2 cut(s)	42, 90
HapII	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1242, 2040, 2789
HgaI	GACGC	2 cut(s)	213, 433
HhaI	GCGC	4 cut(s)	12, 41, 89, 2128
Hin1I	GRCGYC	2 cut(s)	87, 224
Hin1II	CATG	7 cut(s)	463, 1475, 1525, 2195, 2315, 2534, 2573
Hin6I	GCGC	4 cut(s)	10, 39, 87, 2126
HinP1I	GCGC	4 cut(s)	10, 39, 87, 2126
HincII	GTYRAC	3 cut(s)	183, 1307, 2482
HindII	GTYRAC	3 cut(s)	183, 1307, 2482
HinfI	GANTC	8 cut(s)	94, 100, 1196, 1379, 1796, 2538, 2592, 2732
HpaII	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1242, 2040, 2789
HphI	GGTGA	8 cut(s)	250, 326, 403, 797, 907, 982, 2126, 2741
Hpy188I	TCNGA	9 cut(s)	99, 249, 293, 421, 721, 2176, 2442, 2740, 2780
Hpy99I	CGWCG	5 cut(s)	199, 202, 229, 232, 2254
HpyCH4IV	ACGT	5 cut(s)	204, 330, 1309, 2375, 2639
HpyF3I	CTNAG	9 cut(s)	96, 158, 704, 759, 900, 1718, 1743, 1851, 2175
HpySE526I	ACGT	5 cut(s)	204, 330, 1309, 2375, 2639
Hsp92I	GRCGYC	2 cut(s)	87, 224
Hsp92II	CATG	7 cut(s)	463, 1475, 1525, 2195, 2315, 2534, 2573
HspAI	GCGC	4 cut(s)	10, 39, 87, 2126
KasI	GGCGCC	1 cut(s)	86
Kpn2I	TCCGGA	1 cut(s)	2788
KroI	GCCGGC	2 cut(s)	24, 220
KroNI	GCCGGC	2 cut(s)	26, 222
Ksp22I	TGATCA	2 cut(s)	1786, 2422
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	4 cut(s)	145, 172, 1222, 2015
Lsp1109I	GCAGC	5 cut(s)	229, 535, 557, 2078, 2140
LweI	GCATC	6 cut(s)	377, 1948, 1965, 2140, 2311, 2407
MabI	ACCWGGT	1 cut(s)	2467
MaeI	CTAG	3 cut(s)	782, 839, 1859
MaeII	ACGT	5 cut(s)	204, 330, 1309, 2375, 2639
MaeIII	GTNAC	9 cut(s)	346, 895, 1279, 1984, 2023, 2098, 2307, 2371, 2729
MboII	GAAGA	9 cut(s)	262, 475, 549, 558, 985, 1043, 1115, 1822, 1984
MfeI	CAATTG	3 cut(s)	1233, 2061, 2115
MflI	RGATCY	3 cut(s)	378, 872, 2155
MhlI	GDGCHC	5 cut(s)	1866, 2654, 2713, 2770, 2785
MlsI	TGGCCA	2 cut(s)	1174, 2092
MluNI	TGGCCA	2 cut(s)	1174, 2092
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	3 cut(s)	88, 94, 2726
Mox20I	TGGCCA	2 cut(s)	1174, 2092
MroI	TCCGGA	1 cut(s)	2788
MroNI	GCCGGC	2 cut(s)	24, 220
MscI	TGGCCA	2 cut(s)	1174, 2092
MslI	CAYNNNNRTG	6 cut(s)	342, 893, 1476, 2136, 2139, 2568
Msp20I	TGGCCA	2 cut(s)	1174, 2092
MspA1I	CMGCKG	2 cut(s)	122, 548
MspCI	CTTAAG	1 cut(s)	1913
MspI	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1242, 2040, 2789
MspR9I	CCNGG	7 cut(s)	91, 308, 503, 1698, 2041, 2469, 2543
MunI	CAATTG	3 cut(s)	1233, 2061, 2115
MvaI	CCWGG	5 cut(s)	308, 503, 1698, 2469, 2543
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	2 cut(s)	26, 222
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	2 cut(s)	91, 2041
NgoMIV	GCCGGC	2 cut(s)	24, 220
NlaIII	CATG	7 cut(s)	463, 1475, 1525, 2195, 2315, 2534, 2573
NlaIV	GGNNCC	3 cut(s)	88, 141, 150
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	5 cut(s)	895, 1279, 1984, 2098, 2729
NspV	TTCGAA	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	1440
PaqCI	CACCTGC	1 cut(s)	2686
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdiI	GCCGGC	2 cut(s)	26, 222
PfeI	GAWTC	5 cut(s)	1196, 1379, 1796, 2538, 2592
Pfl23II	CGTACG	1 cut(s)	2640
PflMI	CCANNNNNTGG	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	1696
Ple19I	CGATCG	1 cut(s)	2660
PleI	GAGTC	3 cut(s)	88, 94, 2726
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	3 cut(s)	88, 94, 2726
Ppu21I	YACGTR	1 cut(s)	2640
PshAI	GACNNNNGTC	1 cut(s)	1479
PsiI	TTATAA	2 cut(s)	1388, 1968
Psp1406I	AACGTT	1 cut(s)	2375
Psp6I	CCWGG	5 cut(s)	306, 501, 1696, 2467, 2541
PspFI	CCCAGC	2 cut(s)	834, 939
PspGI	CCWGG	5 cut(s)	306, 501, 1696, 2467, 2541
PspLI	CGTACG	1 cut(s)	2640
PspN4I	GGNNCC	3 cut(s)	88, 141, 150
PspPI	GGNCC	5 cut(s)	406, 482, 767, 1020, 2334
PspXI	VCTCGAGB	1 cut(s)	1440
PstI	CTGCAG	4 cut(s)	192, 547, 553, 1072
PstNI	CAGNNNCTG	1 cut(s)	2474
PsuI	RGATCY	3 cut(s)	378, 872, 2155
PvuI	CGATCG	1 cut(s)	2660
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	9 cut(s)	312, 541, 728, 1145, 1683, 1716, 2388, 2473, 2642
RsaNI	GTAC	9 cut(s)	311, 540, 727, 1144, 1682, 1715, 2387, 2472, 2641
RseI	CAYNNNNRTG	6 cut(s)	342, 893, 1476, 2136, 2139, 2568
SapI	GCTCTTC	1 cut(s)	458
Sau96I	GGNCC	5 cut(s)	406, 482, 767, 1020, 2334
SchI	GAGTC	3 cut(s)	88, 94, 2726
ScrFI	CCNGG	7 cut(s)	91, 308, 503, 1698, 2041, 2469, 2543
SduI	GDGCHC	5 cut(s)	1866, 2654, 2713, 2770, 2785
SexAI	ACCWGGT	1 cut(s)	2467
SfaNI	GCATC	6 cut(s)	377, 1948, 1965, 2140, 2311, 2407
SfcI	CTRYAG	9 cut(s)	188, 543, 549, 1068, 2107, 2227, 2266, 2502, 2667
SfoI	GGCGCC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	1440
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	2 cut(s)	406, 1020
SlaI	CTCGAG	1 cut(s)	1440
SmiMI	CAYNNNNRTG	6 cut(s)	342, 893, 1476, 2136, 2139, 2568
SmlI	CTYRAG	2 cut(s)	1440, 1913
SmoI	CTYRAG	2 cut(s)	1440, 1913
SnaBI	TACGTA	1 cut(s)	2640
SsiI	CCGC	9 cut(s)	12, 15, 63, 69, 72, 122, 236, 988, 2037
SspDI	GGCGCC	1 cut(s)	86
SspI	AATATT	5 cut(s)	856, 1130, 1333, 1895, 2461
SspMI	CTAG	3 cut(s)	782, 839, 1859
StyD4I	CCNGG	7 cut(s)	89, 306, 501, 1696, 2039, 2467, 2541
TaiI	ACGT	5 cut(s)	207, 333, 1312, 2378, 2642
TaqI	TCGA	7 cut(s)	43, 230, 569, 583, 1441, 2252, 2707
TaqII	GACCGA	1 cut(s)	2003
TatI	WGTACW	3 cut(s)	726, 1143, 1681
TauI	GCSGC	5 cut(s)	15, 18, 72, 125, 2039
TfiI	GAWTC	5 cut(s)	1196, 1379, 1796, 2538, 2592
TscAI	CASTG	9 cut(s)	192, 736, 934, 1483, 1520, 1859, 1951, 2287, 2602
TseFI	GTSAC	5 cut(s)	895, 1279, 1984, 2098, 2729
TseI	GCWGC	5 cut(s)	217, 545, 548, 2066, 2128
Tsp45I	GTSAC	5 cut(s)	895, 1279, 1984, 2098, 2729
TspDTI	ATGAA	6 cut(s)	410, 476, 1122, 1788, 2157, 2180
TspGWI	ACGGA	3 cut(s)	215, 398, 2099
TspRI	CASTG	9 cut(s)	192, 736, 934, 1483, 1520, 1859, 1951, 2287, 2602
Van91I	CCANNNNNTGG	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	1913
VneI	GTGCAC	2 cut(s)	2650, 2766
VpaK11BI	GGWCC	2 cut(s)	406, 1020
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	5 cut(s)	259, 282, 441, 1397, 2507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	1440
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	3 cut(s)	782, 839, 1859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.