Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59705262 .. 59714736

Gene Structure 9475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGAACCAACTGGTCCGTTTGTATTCCGAGACGCATTTAAGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTACACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTCTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGGGTCTTCAACTTCTTCAAAAATAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTGCAACAGTTCTTGTGCAGCCAGCGTGTTGAAACACCTCAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTCTGGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAGTACTGGAGAGGTTTTTACCAGAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCGGCGAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACAATGATCGTTCCAAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTCAAGAGAACTTACACAATCAATGGACTATCTGCAGAACCATTGGAACAGTTAAGGTTTACTTGTGAAAATGAGAACACATCAGTTGTGCAATATTATCGGAAGAAGTACAAGATTGATCTCAAATATGTAGGTTGGCCAGCCATTCAAGCTGGCAATGATTCAAACCCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCGGGGCAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCCCGGGACAGGGAAAATAATATAACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAGTGAGGAAATGGCATGGGTTAAGGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTTATCCCCAGATGGGGCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGATTGCAAGTCTGGGCATTTGTCAATTTCTCCATAGTATCCCAAGATATTACTTTTGCATTTCTTGGGGCTTTGGTTGATGTGAGTTTTTCTCCCCAACCCTTGCTTCCAGAACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGAAAGGACGGCAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAATAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGGGATGACAGTAGCCCATCAATAGCAGCAGTCGTGGCCTCAACGGATTGGCCAGAGGTCACAAACTACAGAGCAATTGTTTCGGCGCAGCATCACCGCGATGAAATAATCAAAGATCTCTATAAATCACACAAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTCTGTTACATGAGGTGGATGCTATAAGAAGGGCTTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAATAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAGTTTATGTTATACGTACGCAAGGTGCACCAGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCGCGGCATTACATTGAGGGTGACTCATCCCATGGAGGTTCTACAACTGGTGGGGGTCCACAGGTTCTACGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

806

Amino Acids

91.63

Weight (kDa)

9.34

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	2 - 102	6.3e-19	N-terminal domain of argonaute
ArgoL1	PF08699	113 - 161	1.8e-18	Argonaute linker 1 domain
PAZ	PF02170	182 - 297	2.9e-25	PAZ domain
ArgoL2	PF16488	307 - 357	3.1e-10	Argonaute linker 2 domain
Piwi	PF02171	451 - 770	5.4e-108	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	989, 1551
AarI	CACCTGC	1 cut(s)	2272
Acc36I	ACCTGC	1 cut(s)	2272
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	2 cut(s)	1722, 2299
AccIII	TCCGGA	1 cut(s)	2374
AciI	CCGC	4 cut(s)	589, 842, 1720, 2299
AclI	AACGTT	1 cut(s)	1961
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	773, 1673
AcsI	RAATTY	3 cut(s)	48, 998, 2093
AcuI	CTGAAG	1 cut(s)	1328
AfaI	GTAC	7 cut(s)	329, 401, 746, 1299, 1974, 2059, 2228
AfiI	CCNNNNNNNGG	7 cut(s)	140, 588, 921, 922, 1109, 1110, 1622
AflII	CTTAAG	1 cut(s)	1496
AgsI	TTSAA	8 cut(s)	162, 171, 266, 485, 586, 785, 801, 2051
AjnI	CCWGG	3 cut(s)	1279, 2053, 2127
AjuI	GAANNNNNNNTTGG	2 cut(s)	1242, 1274
AloI	GAACNNNNNNTCC	2 cut(s)	2125, 2157
AluBI	AGCT	6 cut(s)	311, 364, 439, 788, 826, 2288
AluI	AGCT	6 cut(s)	311, 364, 439, 788, 826, 2288
Alw21I	GWGCWC	1 cut(s)	2240
Alw26I	GTCTC	3 cut(s)	23, 963, 1437
Alw44I	GTGCAC	1 cut(s)	2236
AlwI	GGATC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	2060
Ama87I	CYCGRG	2 cut(s)	915, 1041
Aor13HI	TCCGGA	1 cut(s)	2374
AoxI	GGCC	6 cut(s)	89, 368, 773, 1659, 1673, 1873
ApaLI	GTGCAC	1 cut(s)	2236
ApeKI	GCWGC	5 cut(s)	149, 252, 1619, 1649, 1711
ApoI	RAATTY	3 cut(s)	48, 998, 2093
AspLEI	GCGC	2 cut(s)	1711, 2299
AspS9I	GGNCC	5 cut(s)	13, 89, 368, 621, 2351
AsuC2I	CCSGG	3 cut(s)	916, 917, 1624
AsuHPI	GGTGA	5 cut(s)	398, 508, 583, 1709, 2327
AvaI	CYCGRG	2 cut(s)	915, 1041
AvaII	GGWCC	3 cut(s)	13, 621, 2351
BaeGI	GKGCMC	1 cut(s)	2240
BaeI	ACNNNNGTAYC	2 cut(s)	2049, 2082
BalI	TGGCCA	2 cut(s)	775, 1675
BanII	GRGCYC	2 cut(s)	1449, 2371
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	2240
BbvI	GCAGC	5 cut(s)	136, 264, 1631, 1661, 1723
BccI	CCATC	9 cut(s)	56, 134, 325, 1060, 1102, 1648, 1853, 2023, 2183
BceAI	ACGGC	3 cut(s)	1352, 1819, 2124
BcgI	CGANNNNNNTGC	6 cut(s)	716, 750, 1686, 1720, 1973, 2007
BciT130I	CCWGG	3 cut(s)	1281, 2055, 2129
BciVI	GTATCC	1 cut(s)	1201
BclI	TGATCA	2 cut(s)	1369, 2008
BcnI	CCSGG	3 cut(s)	916, 917, 1624
BcoDI	GTCTC	3 cut(s)	23, 963, 1437
BfaI	CTAG	2 cut(s)	383, 440
BfmI	CTRYAG	7 cut(s)	150, 669, 1690, 1813, 1852, 2088, 2253
BfrI	CTTAAG	1 cut(s)	1496
BfuAI	ACCTGC	1 cut(s)	2272
BfuI	GTATCC	1 cut(s)	1201
BglII	AGATCT	2 cut(s)	473, 1738
BisI	GCNGC	6 cut(s)	150, 253, 1620, 1650, 1712, 2300
BlsI	GCNGC	6 cut(s)	151, 254, 1621, 1651, 1713, 2301
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	6 cut(s)	916, 917, 1281, 1624, 2055, 2129
Bme18I	GGWCC	3 cut(s)	13, 621, 2351
BmeT110I	CYCGRG	2 cut(s)	915, 1041
BmgT120I	GGNCC	5 cut(s)	13, 89, 368, 621, 2351
BmiI	GGNNCC	1 cut(s)	2352
BmrFI	CCNGG	6 cut(s)	916, 917, 1281, 1624, 2055, 2129
BmsI	GCATC	5 cut(s)	1531, 1548, 1723, 1897, 1993
BoxI	GACNNNNGTC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	6 cut(s)	815, 847, 1228, 1260, 2303, 2335
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	3 cut(s)	916, 917, 1624
BsaAI	YACGTR	1 cut(s)	2226
BsaJI	CCNNGG	6 cut(s)	108, 914, 915, 1623, 2128, 2326
BsaWI	WCCGGW	1 cut(s)	2374
BsaXI	ACNNNNNCTCC	2 cut(s)	1590, 1620
Bsc4I	CCNNNNNNNGG	7 cut(s)	140, 588, 921, 922, 1109, 1110, 1622
Bse1I	ACTGG	5 cut(s)	15, 407, 623, 1876, 2347
Bse3DI	GCAATG	3 cut(s)	92, 799, 1058
BseAI	TCCGGA	1 cut(s)	2374
BseBI	CCWGG	3 cut(s)	1281, 2055, 2129
BseDI	CCNNGG	6 cut(s)	108, 914, 915, 1623, 2128, 2326
BseGI	GGATG	5 cut(s)	1276, 1612, 1633, 1912, 2321
BseLI	CCNNNNNNNGG	7 cut(s)	140, 588, 921, 922, 1109, 1110, 1622
BseMI	GCAATG	3 cut(s)	92, 799, 1058
BseMII	CTCAG	6 cut(s)	351, 492, 1315, 1340, 1448, 1752
BseNI	ACTGG	5 cut(s)	15, 407, 623, 1876, 2347
BseSI	GKGCMC	1 cut(s)	2240
BseXI	GCAGC	5 cut(s)	136, 264, 1631, 1661, 1723
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	271
Bsh1236I	CGCG	2 cut(s)	1722, 2299
Bsh1285I	CGRYCG	1 cut(s)	1576
BshFI	GGCC	6 cut(s)	91, 370, 775, 1661, 1675, 1875
BsiEI	CGRYCG	1 cut(s)	1576
BsiHKAI	GWGCWC	1 cut(s)	2240
BsiHKCI	CYCGRG	2 cut(s)	915, 1041
BsiSI	CCGG	3 cut(s)	916, 1623, 2375
BsiWI	CGTACG	1 cut(s)	2226
BslFI	GGGAC	3 cut(s)	629, 897, 932
BslI	CCNNNNNNNGG	7 cut(s)	140, 588, 921, 922, 1109, 1110, 1622
BsmAI	GTCTC	3 cut(s)	23, 963, 1437
BsmBI	CGTCTC	2 cut(s)	23, 963
BsmFI	GGGAC	3 cut(s)	629, 897, 932
BsnI	GGCC	6 cut(s)	91, 370, 775, 1661, 1675, 1875
BsoBI	CYCGRG	2 cut(s)	915, 1041
Bsp1286I	GDGCHC	3 cut(s)	1449, 2240, 2371
Bsp13I	TCCGGA	1 cut(s)	2374
Bsp19I	CCATGG	1 cut(s)	2326
BspACI	CCGC	4 cut(s)	589, 842, 1720, 2299
BspANI	GGCC	6 cut(s)	91, 370, 775, 1661, 1675, 1875
BspCNI	CTCAG	6 cut(s)	352, 493, 1314, 1339, 1447, 1753
BspEI	TCCGGA	1 cut(s)	2374
BspFNI	CGCG	2 cut(s)	1722, 2299
BspLI	GGNNCC	1 cut(s)	2352
BspMAI	CTGCAG	2 cut(s)	154, 673
BspMI	ACCTGC	1 cut(s)	2272
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	1496
BsrDI	GCAATG	3 cut(s)	92, 799, 1058
BsrI	ACTGG	5 cut(s)	15, 407, 623, 1876, 2347
BssECI	CCNNGG	6 cut(s)	108, 914, 915, 1623, 2128, 2326
BssT1I	CCWWGG	2 cut(s)	108, 2326
Bst2UI	CCWGG	3 cut(s)	1281, 2055, 2129
Bst4CI	ACNGT	9 cut(s)	243, 687, 1079, 1269, 1531, 1634, 1957, 2062, 2213
Bst6I	CTCTTC	1 cut(s)	65
BstAFI	CTTAAG	1 cut(s)	1496
BstBAI	YACGTR	1 cut(s)	2226
BstC8I	GCNNGC	4 cut(s)	257, 777, 790, 1580
BstDEI	CTNAG	8 cut(s)	305, 360, 501, 1301, 1326, 1434, 1441, 1761
BstDSI	CCRYGG	1 cut(s)	2326
BstF5I	GGATG	5 cut(s)	1276, 1612, 1633, 1912, 2321
BstFNI	CGCG	2 cut(s)	1722, 2299
BstHHI	GCGC	2 cut(s)	1711, 2299
BstMAI	GTCTC	3 cut(s)	23, 963, 1437
BstMCI	CGRYCG	1 cut(s)	1576
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 785, 823, 1658, 2273, 2294
BstNI	CCWGG	3 cut(s)	1281, 2055, 2129
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstSCI	CCNGG	6 cut(s)	914, 915, 1279, 1622, 2053, 2127
BstSFI	CTRYAG	7 cut(s)	150, 669, 1690, 1813, 1852, 2088, 2253
BstSLI	GKGCMC	1 cut(s)	2240
BstSNI	TACGTA	1 cut(s)	2226
BstUI	CGCG	2 cut(s)	1722, 2299
BstV1I	GCAGC	5 cut(s)	136, 264, 1631, 1661, 1723
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	473, 1738
BstXI	CCANNNNNNTGG	1 cut(s)	1079
BstYI	RGATCY	2 cut(s)	473, 1738
BsuI	GTATCC	1 cut(s)	1201
BsuRI	GGCC	6 cut(s)	91, 370, 775, 1661, 1675, 1875
BtgI	CCRYGG	1 cut(s)	2326
BtgZI	GCGATG	1 cut(s)	1737
BtsCI	GGATG	5 cut(s)	1276, 1612, 1633, 1912, 2321
BtsI	GCAGTG	2 cut(s)	1121, 2181
BtsIMutI	CAGTG	6 cut(s)	1084, 1121, 1442, 1527, 1873, 2181
BveI	ACCTGC	1 cut(s)	2272
Cac8I	GCNNGC	4 cut(s)	257, 777, 790, 1580
CaiI	CAGNNNCTG	1 cut(s)	2060
CfoI	GCGC	2 cut(s)	1711, 2299
Cfr13I	GGNCC	5 cut(s)	13, 89, 368, 621, 2351
Cfr9I	CCCGGG	1 cut(s)	915
CseI	GACGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	2053
Csp6I	GTAC	7 cut(s)	328, 400, 745, 1298, 1973, 2058, 2227
CviAII	CATG	9 cut(s)	67, 1029, 1073, 1123, 1778, 1898, 2117, 2156, 2327
CviQI	GTAC	7 cut(s)	328, 400, 745, 1298, 1973, 2058, 2227
DdeI	CTNAG	8 cut(s)	305, 360, 501, 1301, 1326, 1434, 1441, 1761
DraI	TTTAAA	1 cut(s)	1536
EaeI	YGGCCR	2 cut(s)	773, 1673
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco105I	TACGTA	1 cut(s)	2226
Eco130I	CCWWGG	2 cut(s)	108, 2326
Eco24I	GRGCYC	2 cut(s)	1449, 2371
Eco47I	GGWCC	3 cut(s)	13, 621, 2351
Eco57I	CTGAAG	1 cut(s)	1328
Eco88I	CYCGRG	2 cut(s)	915, 1041
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	3 cut(s)	1279, 2053, 2127
EcoT14I	CCWWGG	2 cut(s)	108, 2326
EcoT38I	GRGCYC	2 cut(s)	1449, 2371
ErhI	CCWWGG	2 cut(s)	108, 2326
Esp3I	CGTCTC	2 cut(s)	23, 963
FaeI	CATG	9 cut(s)	70, 1032, 1076, 1126, 1781, 1901, 2120, 2159, 2330
FalI	AAGNNNNNCTT	8 cut(s)	566, 598, 682, 714, 969, 1001, 1906, 1938
FaqI	GGGAC	3 cut(s)	629, 897, 932
FatI	CATG	9 cut(s)	66, 1028, 1072, 1122, 1777, 1897, 2116, 2155, 2326
FauI	CCCGC	2 cut(s)	582, 835
FbaI	TGATCA	2 cut(s)	1369, 2008
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	6 cut(s)	150, 253, 1620, 1650, 1712, 2300
FokI	GGATG	5 cut(s)	1263, 1599, 1640, 1919, 2308
FriOI	GRGCYC	2 cut(s)	1449, 2371
Fsp4HI	GCNGC	6 cut(s)	150, 253, 1620, 1650, 1712, 2300
FspBI	CTAG	2 cut(s)	383, 440
GlaI	GCGC	2 cut(s)	1710, 2298
GluI	GCNGC	6 cut(s)	150, 253, 1620, 1650, 1712, 2300
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	6 cut(s)	91, 370, 775, 1661, 1675, 1875
HapII	CCGG	3 cut(s)	916, 1623, 2375
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	1711, 2299
Hin1II	CATG	9 cut(s)	70, 1032, 1076, 1126, 1781, 1901, 2120, 2159, 2330
Hin6I	GCGC	2 cut(s)	1709, 2297
HinP1I	GCGC	2 cut(s)	1709, 2297
HincII	GTYRAC	2 cut(s)	908, 2068
HindII	GTYRAC	2 cut(s)	908, 2068
HinfI	GANTC	7 cut(s)	421, 797, 980, 1379, 2124, 2178, 2318
HpaII	CCGG	3 cut(s)	916, 1623, 2375
HphI	GGTGA	5 cut(s)	398, 508, 583, 1709, 2327
Hpy166II	GTNNAC	9 cut(s)	330, 425, 696, 811, 908, 1520, 2068, 2238, 2354
Hpy188I	TCNGA	6 cut(s)	28, 322, 738, 1329, 1762, 2028
Hpy188III	TCNNGA	9 cut(s)	185, 275, 293, 557, 640, 1085, 1262, 1839, 2375
Hpy8I	GTNNAC	9 cut(s)	330, 425, 696, 811, 908, 1520, 2068, 2238, 2354
Hpy99I	CGWCG	1 cut(s)	1840
HpyAV	CCTTC	8 cut(s)	383, 1504, 1759, 1819, 1865, 1911, 1934, 2381
HpyCH4III	ACNGT	9 cut(s)	243, 687, 1079, 1269, 1531, 1634, 1957, 2062, 2213
HpyCH4IV	ACGT	3 cut(s)	910, 1961, 2225
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 785, 823, 1658, 2273, 2294
HpyF3I	CTNAG	8 cut(s)	305, 360, 501, 1301, 1326, 1434, 1441, 1761
HpySE526I	ACGT	3 cut(s)	910, 1961, 2225
Hsp92II	CATG	9 cut(s)	70, 1032, 1076, 1126, 1781, 1901, 2120, 2159, 2330
HspAI	GCGC	2 cut(s)	1709, 2297
Kpn2I	TCCGGA	1 cut(s)	2374
Ksp22I	TGATCA	2 cut(s)	1369, 2008
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	823, 1598
Lsp1109I	GCAGC	5 cut(s)	136, 264, 1631, 1661, 1723
LweI	GCATC	5 cut(s)	1531, 1548, 1723, 1897, 1993
MabI	ACCWGGT	1 cut(s)	2053
MaeI	CTAG	2 cut(s)	383, 440
MaeII	ACGT	3 cut(s)	910, 1961, 2225
MaeIII	GTNAC	8 cut(s)	496, 880, 1567, 1606, 1681, 1893, 1957, 2315
MboII	GAAGA	8 cut(s)	82, 150, 159, 586, 644, 751, 1405, 1567
MfeI	CAATTG	2 cut(s)	834, 1698
MflI	RGATCY	2 cut(s)	473, 1738
MhlI	GDGCHC	3 cut(s)	1449, 2240, 2371
MlsI	TGGCCA	2 cut(s)	775, 1675
MluNI	TGGCCA	2 cut(s)	775, 1675
MlyI	GAGTC	2 cut(s)	430, 2312
Mox20I	TGGCCA	2 cut(s)	775, 1675
MroI	TCCGGA	1 cut(s)	2374
MscI	TGGCCA	2 cut(s)	775, 1675
MslI	CAYNNNNRTG	4 cut(s)	494, 1077, 1722, 2154
Msp20I	TGGCCA	2 cut(s)	775, 1675
MspCI	CTTAAG	1 cut(s)	1496
MspI	CCGG	3 cut(s)	916, 1623, 2375
MspR9I	CCNGG	6 cut(s)	916, 917, 1281, 1624, 2055, 2129
MunI	CAATTG	2 cut(s)	834, 1698
MvaI	CCWGG	3 cut(s)	1281, 2055, 2129
MvnI	CGCG	2 cut(s)	1722, 2299
MwoI	GCNNNNNNNGC	6 cut(s)	72, 785, 823, 1658, 2273, 2294
NciI	CCSGG	3 cut(s)	916, 917, 1624
NcoI	CCATGG	1 cut(s)	2326
NlaIII	CATG	9 cut(s)	70, 1032, 1076, 1126, 1781, 1901, 2120, 2159, 2330
NlaIV	GGNNCC	1 cut(s)	2352
NmuCI	GTSAC	5 cut(s)	496, 880, 1567, 1681, 2315
PaeR7I	CTCGAG	1 cut(s)	1041
PaqCI	CACCTGC	1 cut(s)	2272
PciSI	GCTCTTC	1 cut(s)	65
PfeI	GAWTC	5 cut(s)	797, 980, 1379, 2124, 2178
Pfl23II	CGTACG	1 cut(s)	2226
PflMI	CCANNNNNTGG	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	1279
PkrI	GCNGC	6 cut(s)	151, 254, 1621, 1651, 1713, 2301
Ple19I	CGATCG	1 cut(s)	1576
PleI	GAGTC	2 cut(s)	429, 2312
PpsI	GAGTC	2 cut(s)	429, 2312
Ppu21I	YACGTR	1 cut(s)	2226
PshAI	GACNNNNGTC	1 cut(s)	1080
PsiI	TTATAA	2 cut(s)	989, 1551
Psp1406I	AACGTT	1 cut(s)	1961
Psp6I	CCWGG	3 cut(s)	1279, 2053, 2127
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	3 cut(s)	1279, 2053, 2127
PspLI	CGTACG	1 cut(s)	2226
PspN4I	GGNNCC	1 cut(s)	2352
PspPI	GGNCC	5 cut(s)	13, 89, 368, 621, 2351
PspXI	VCTCGAGB	1 cut(s)	1041
PstI	CTGCAG	2 cut(s)	154, 673
PstNI	CAGNNNCTG	1 cut(s)	2060
PsuI	RGATCY	2 cut(s)	473, 1738
PvuI	CGATCG	1 cut(s)	1576
RsaI	GTAC	7 cut(s)	329, 401, 746, 1299, 1974, 2059, 2228
RsaNI	GTAC	7 cut(s)	328, 400, 745, 1298, 1973, 2058, 2227
RseI	CAYNNNNRTG	4 cut(s)	494, 1077, 1722, 2154
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	6 cut(s)	150, 253, 1620, 1650, 1712, 2300
Sau96I	GGNCC	5 cut(s)	13, 89, 368, 621, 2351
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	430, 2312
ScrFI	CCNGG	6 cut(s)	916, 917, 1281, 1624, 2055, 2129
SduI	GDGCHC	3 cut(s)	1449, 2240, 2371
SexAI	ACCWGGT	1 cut(s)	2053
SfaNI	GCATC	5 cut(s)	1531, 1548, 1723, 1897, 1993
SfcI	CTRYAG	7 cut(s)	150, 669, 1690, 1813, 1852, 2088, 2253
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	3 cut(s)	13, 621, 2351
SlaI	CTCGAG	1 cut(s)	1041
SmaI	CCCGGG	1 cut(s)	917
SmiMI	CAYNNNNRTG	4 cut(s)	494, 1077, 1722, 2154
SmlI	CTYRAG	3 cut(s)	273, 1041, 1496
SmoI	CTYRAG	3 cut(s)	273, 1041, 1496
SnaBI	TACGTA	1 cut(s)	2226
SsiI	CCGC	4 cut(s)	589, 842, 1720, 2299
SspI	AATATT	4 cut(s)	457, 731, 1478, 2047
SspMI	CTAG	2 cut(s)	383, 440
StyD4I	CCNGG	6 cut(s)	914, 915, 1279, 1622, 2053, 2127
StyI	CCWWGG	2 cut(s)	108, 2326
TaaI	ACNGT	9 cut(s)	243, 687, 1079, 1269, 1531, 1634, 1957, 2062, 2213
TaiI	ACGT	3 cut(s)	913, 1964, 2228
TaqI	TCGA	4 cut(s)	184, 1042, 1838, 2293
TaqII	GACCGA	1 cut(s)	1586
TatI	WGTACW	3 cut(s)	327, 399, 744
TauI	GCSGC	1 cut(s)	2302
TfiI	GAWTC	5 cut(s)	797, 980, 1379, 2124, 2178
TscAI	CASTG	6 cut(s)	1084, 1121, 1442, 1534, 1873, 2188
TseFI	GTSAC	5 cut(s)	496, 880, 1567, 1681, 2315
TseI	GCWGC	5 cut(s)	149, 252, 1619, 1649, 1711
Tsp45I	GTSAC	5 cut(s)	496, 880, 1567, 1681, 2315
TspDTI	ATGAA	5 cut(s)	17, 83, 1371, 1740, 1766
TspGWI	ACGGA	2 cut(s)	5, 1682
TspMI	CCCGGG	1 cut(s)	915
TspRI	CASTG	6 cut(s)	1084, 1121, 1442, 1534, 1873, 2188
Van91I	CCANNNNNTGG	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	1496
VneI	GTGCAC	1 cut(s)	2236
VpaK11BI	GGWCC	3 cut(s)	13, 621, 2351
XapI	RAATTY	3 cut(s)	48, 998, 2093
XhoI	CTCGAG	1 cut(s)	1041
XmaI	CCCGGG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	2 cut(s)	383, 440
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.