Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

34236338 .. 34240068

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTACTCGTTTGACGAGGTGCAAATCGAGGTGTTACAAATCACCTTGTCCGACATCTCATGCCAGGGTCGAGGCCGTGATCGAGCACAACCACCAAAACTTGCCATCAGGCAAAGCTCGCTTCATTCAGTTGCCTCAAACCCTAGCCGCGTTGCCGCAGCTCCCGCAACAGAGAAACCTTGGAACTCTCCTTCTGCCAAAATGGGTATCTCTCGAGATTCCATGCACAAGAGACGTGCCACTGGAGGCAAGAAGAAGGCGTGGAGGAAGAAGCGAAAGTATGAGCTCGGAAGGGTGCCTGCTAACACCAAACTGTCCAGCAACAAGACAGTGAGGAGGATCAGGGTTCGAGGTGGAAATGTGAAGTGGCGTGCTTTGAGGCTCGACACAGGAAATTTCTCTTGGGGTAGTGAGGCTGTGACCAGGAAGACCCGTCTTCTTGATGTTGTCTACAATGCATCTAACAATGAGCTGGTGCGTACTCAAACCTTGGTGAAGGGTGCCATTGTTCAGGTTGATGCAGCACCTTTCAAGCAGTGGTATTCTACCCACTATGGTGTTGAAATTGGGCGCAGGAAGAAAACTGCAGCTGCTATCAAGAAAGAAGCAGAGGACGGTGAGGCCGCTACTGCCGCTGCCGCTGCCGCTGAGGAGGTGAAGAAGAGCAAGCATGTAGCAAGGAAGCTAGAGAAGCGTCAGCAGACTCGTGTGCTTGACCAGCATATTGAGGAACAATTTGGTGGTGGTCGTCTATTGGCTTGCATCTCTTCACGACCTGGTCAATGTGGCCGTGCAGATGGATACATCTTGGAGGGCAAAGAGCTGGAGTTTTACATGAAGAAGCTCCAGAAGAAGAAGGGAAAGGGAGCAGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

292

Amino Acids

32.43

Weight (kDa)

10.38

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	72 - 270	4.6e-52	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	295, 500
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	150
AciI	CCGC	7 cut(s)	148, 156, 165, 624, 633, 639, 645
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	2 cut(s)	5, 481
AgsI	TTSAA	2 cut(s)	532, 563
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	3 cut(s)	63, 422, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	9 cut(s)	117, 161, 286, 472, 590, 685, 823, 844, 872
AluI	AGCT	9 cut(s)	117, 161, 286, 472, 590, 685, 823, 844, 872
Alw21I	GWGCWC	2 cut(s)	88, 288
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	3 cut(s)	73, 621, 787
ApeKI	GCWGC	8 cut(s)	158, 521, 587, 590, 635, 641, 869, 872
ApoI	RAATTY	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	573
AsuHPI	GGTGA	4 cut(s)	34, 505, 629, 667
AvaI	CYCGRG	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	295, 500
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	428, 434
Bbv12I	GWGCWC	2 cut(s)	88, 288
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	7 cut(s)	170, 533, 577, 599, 622, 628, 859
BccI	CCATC	2 cut(s)	113, 791
BceAI	ACGGC	2 cut(s)	60, 774
BciT130I	CCWGG	3 cut(s)	65, 424, 777
BciVI	GTATCC	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	144, 686
BfmI	CTRYAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	794
Bme1390I	CCNGG	3 cut(s)	65, 424, 777
BmeT110I	CYCGRG	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	297, 502
BmrFI	CCNGG	3 cut(s)	65, 424, 777
BmsI	GCATC	3 cut(s)	467, 508, 771
BpiI	GAAGAC	2 cut(s)	428, 434
BpmI	CTGGAG	3 cut(s)	264, 830, 845
Bpu10I	CCTNAGC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	64, 179, 489
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	65, 424, 777
BseDI	CCNNGG	3 cut(s)	64, 179, 489
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	349, 665
BseXI	GCAGC	7 cut(s)	170, 533, 577, 599, 622, 628, 859
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	75, 623, 789
BshNI	GGYRCC	2 cut(s)	295, 500
BsiHKAI	GWGCWC	2 cut(s)	88, 288
BsiHKCI	CYCGRG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	75, 623, 789
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	88, 288
Bsp143I	GATC	2 cut(s)	79, 339
BspACI	CCGC	7 cut(s)	148, 156, 165, 624, 633, 639, 645
BspANI	GGCC	3 cut(s)	75, 623, 789
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	297, 502
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	656
BspT107I	GGYRCC	2 cut(s)	295, 500
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	64, 179, 489
BssMI	GATC	2 cut(s)	79, 339
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	179, 489
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	3 cut(s)	65, 424, 777
Bst4CI	ACNGT	3 cut(s)	315, 331, 617
Bst6I	CTCTTC	2 cut(s)	656, 772
BstC8I	GCNNGC	5 cut(s)	119, 300, 372, 668, 760
BstDEI	CTNAG	1 cut(s)	648
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	2 cut(s)	82, 342
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	79, 339
BstMWI	GCNNNNNNNGC	9 cut(s)	118, 164, 629, 632, 638, 641, 644, 691, 718
BstNI	CCWGG	3 cut(s)	65, 424, 777
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	63, 422, 775
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	7 cut(s)	170, 533, 577, 599, 622, 628, 859
BstV2I	GAAGAC	2 cut(s)	428, 434
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	75, 623, 789
BtrI	CACGTC	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	240, 336, 542
Cac8I	GCNNGC	5 cut(s)	119, 300, 372, 668, 760
CfoI	GCGC	1 cut(s)	573
CseI	GACGC	1 cut(s)	683
CsiI	ACCWGGT	1 cut(s)	775
Csp6I	GTAC	2 cut(s)	4, 480
CviAII	CATG	4 cut(s)	60, 223, 671, 835
CviQI	GTAC	2 cut(s)	4, 480
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	2 cut(s)	81, 341
DpnII	GATC	2 cut(s)	79, 339
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	2 cut(s)	656, 772
EarI	CTCTTC	2 cut(s)	656, 772
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	179, 489
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	63, 422, 775
EcoT14I	CCWWGG	2 cut(s)	179, 489
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	179, 489
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	4 cut(s)	63, 226, 674, 838
FaiI	YATR	7 cut(s)	61, 224, 282, 555, 672, 723, 836
FatI	CATG	4 cut(s)	59, 222, 670, 834
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	144, 686
GlaI	GCGC	1 cut(s)	572
GsuI	CTGGAG	3 cut(s)	264, 830, 845
HaeIII	GGCC	3 cut(s)	75, 623, 789
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	63, 226, 674, 838
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	2 cut(s)	218, 703
HphI	GGTGA	4 cut(s)	34, 505, 629, 667
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	52, 290
Hpy188III	TCNNGA	6 cut(s)	213, 215, 440, 598, 771, 847
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	5 cut(s)	201, 250, 285, 490, 850
HpyCH4III	ACNGT	3 cut(s)	315, 331, 617
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	7 cut(s)	22, 226, 458, 521, 587, 762, 794
HpyF10VI	GCNNNNNNNGC	9 cut(s)	118, 164, 629, 632, 638, 641, 644, 691, 718
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	4 cut(s)	63, 226, 674, 838
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	79, 339
LguI	GCTCTTC	1 cut(s)	656
LmnI	GCTCC	3 cut(s)	166, 849, 866
Lsp1109I	GCAGC	7 cut(s)	170, 533, 577, 599, 622, 628, 859
LweI	GCATC	3 cut(s)	467, 508, 771
MabI	ACCWGGT	1 cut(s)	775
MaeI	CTAG	2 cut(s)	144, 686
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	33, 418
MalI	GATC	2 cut(s)	81, 341
MboI	GATC	2 cut(s)	79, 339
MhlI	GDGCHC	2 cut(s)	88, 288
MluCI	AATT	3 cut(s)	394, 564, 734
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	5 cut(s)	590, 635, 641, 647, 872
MspR9I	CCNGG	3 cut(s)	65, 424, 777
MvaI	CCWGG	3 cut(s)	65, 424, 777
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	9 cut(s)	118, 164, 629, 632, 638, 641, 644, 691, 718
NdeII	GATC	2 cut(s)	79, 339
NlaIII	CATG	4 cut(s)	63, 226, 674, 838
NlaIV	GGNNCC	2 cut(s)	297, 502
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	674
OliI	CACNNNNGTG	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	777
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	63, 422, 775
PspGI	CCWGG	3 cut(s)	63, 422, 775
PspN4I	GGNNCC	2 cut(s)	297, 502
PstI	CTGCAG	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	777
PvuII	CAGCTG	2 cut(s)	590, 872
RsaI	GTAC	2 cut(s)	5, 481
RsaNI	GTAC	2 cut(s)	4, 480
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	656
Sau3AI	GATC	2 cut(s)	79, 339
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	65, 424, 777
SduI	GDGCHC	2 cut(s)	88, 288
SexAI	ACCWGGT	1 cut(s)	775
SfaNI	GCATC	3 cut(s)	467, 508, 771
SfcI	CTRYAG	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	394, 564, 734
SsiI	CCGC	7 cut(s)	148, 156, 165, 624, 633, 639, 645
SspMI	CTAG	2 cut(s)	144, 686
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	63, 422, 775
StyI	CCWWGG	2 cut(s)	179, 489
TaaI	ACNGT	3 cut(s)	315, 331, 617
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	6 cut(s)	27, 70, 82, 214, 349, 384
TasI	AATT	3 cut(s)	394, 564, 734
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	6 cut(s)	150, 158, 626, 635, 641, 647
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	3 cut(s)	247, 336, 542
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	8 cut(s)	158, 521, 587, 590, 635, 641, 869, 872
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	113, 851
TspRI	CASTG	3 cut(s)	247, 336, 542
Tth111I	GACNNNGTC	1 cut(s)	777
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	2 cut(s)	144, 686
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.