pycom01g05040

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
4551201 .. 4551691
491 bp
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UTR
Exon/CDS
Intron
pycom01g05040.4

Sequence Viewer

Length: 285 bp
ATGTTCACTAAGTACCGAGGAATTGTTTTTGCACAGGCTCACTGTGAAGAACTAATCCAAGATCTTTATAGTGTTGAGCAGGACGTTAACAGAGGTTCGATTACTGGAGGAATGATCAGTGTATTTTCTTACCATGATTATTTTCATTATGTTAGGGAGCATTTCAGAGCATTTCTACAAGCAACTGGCCTTAAACCAGAGAGAATTATCTTCTTCAGACTTAGTGAAAGGCAATTTAGTCAAGTTCTGCTGTATGAAATGGATGCTATAAGAAAGGTATGTTAA

Protein Analysis

95

Amino Acids

11.19

Weight (kDa)

6.9

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 1 cut(s) 14
AoxI GGCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 114
BglII AGATCT 1 cut(s) 61
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 109, 190
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 109, 190
BshFI GGCC 1 cut(s) 189
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 61, 114
BspANI GGCC 1 cut(s) 189
BsrI ACTGG 2 cut(s) 109, 190
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 61, 114
Bst4CI ACNGT 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 9, 221
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 64, 117
BstMBI GATC 2 cut(s) 61, 114
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 40, 124
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 134
CviJI RGCY 2 cut(s) 38, 189
CviKI_1 RGCY 2 cut(s) 38, 189
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 9, 221
DpnI GATC 2 cut(s) 63, 116
DpnII GATC 2 cut(s) 61, 114
Eco57I CTGAAG 1 cut(s) 199
FaeI CATG 1 cut(s) 137
FaiI YATR 6 cut(s) 69, 135, 150, 255, 269, 280
FatI CATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 114
FokI GGATG 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HpaI GTTAAC 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 6, 88
Hpy188I TCNGA 2 cut(s) 167, 218
Hpy8I GTNNAC 2 cut(s) 6, 88
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 9, 221
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 61, 114
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 20, 65, 90, 171, 210
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 63, 116
MboI GATC 2 cut(s) 61, 114
MboII GAAGA 3 cut(s) 59, 202, 205
MflI RGATCY 1 cut(s) 61
MluCI AATT 3 cut(s) 21, 204, 233
MnlI CCTC 3 cut(s) 11, 86, 101
MseI TTAA 3 cut(s) 87, 192, 283
NdeII GATC 2 cut(s) 61, 114
NlaIII CATG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 87, 192, 283
Sau3AI GATC 2 cut(s) 61, 114
SetI ASST 3 cut(s) 87, 97, 279
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 3 cut(s) 21, 204, 233
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 98
TasI AATT 3 cut(s) 21, 204, 233
Tru1I TTAA 3 cut(s) 87, 192, 283
Tru9I TTAA 3 cut(s) 87, 192, 283
TscAI CASTG 2 cut(s) 47, 124
TspDTI ATGAA 2 cut(s) 134, 270
TspRI CASTG 2 cut(s) 47, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.