Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59466883 .. 59467974

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAATTGAAACGTCAGGGACTGAAACGTCGAGACCCTATAAGTATAGGGAGTAAACAGTATTTTGTCCTTGAATTTAATATCTTTTCAATTACGGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGTACGTGCAGCCAGCGTGTTGAAACACCTCAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCAGCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAGTACTGGAGAGGTTTTTACCAGAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCGAGATCTTTTTTTGAAGCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCAAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTATCTGCAGAACCATTGGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

204

Amino Acids

23.76

Weight (kDa)

9.54

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoL1	PF08699	88 - 136	3e-19	Argonaute linker 1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	2 cut(s)	245, 514
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	3 cut(s)	172, 254, 326
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	10, 74, 90, 191, 410, 511
AluBI	AGCT	3 cut(s)	236, 289, 364
AluI	AGCT	3 cut(s)	236, 289, 364
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	293, 546
AsuHPI	GGTGA	3 cut(s)	323, 433, 508
AvaII	GGWCC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	308, 365
BfmI	CTRYAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmcAI	AGTACT	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	293, 546
BpmI	CTGGAG	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	332, 548
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	276, 417
BseNI	ACTGG	2 cut(s)	332, 548
BseXI	GCAGC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	33, 554
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	33, 554
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	102, 398, 457, 478
BspACI	CCGC	2 cut(s)	245, 514
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	277, 418
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	332, 548
BssMI	GATC	4 cut(s)	102, 398, 457, 478
Bst4CI	ACNGT	4 cut(s)	60, 164, 259, 612
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	230, 285, 426
BstKTI	GATC	4 cut(s)	105, 401, 460, 481
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	4 cut(s)	102, 398, 457, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	255, 453
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	293, 546
Csp6I	GTAC	3 cut(s)	171, 253, 325
CviJI	RGCY	9 cut(s)	121, 133, 141, 180, 236, 289, 295, 364, 413
CviKI_1	RGCY	9 cut(s)	121, 133, 141, 180, 236, 289, 295, 364, 413
CviQI	GTAC	3 cut(s)	171, 253, 325
DdeI	CTNAG	3 cut(s)	230, 285, 426
DpnI	GATC	4 cut(s)	104, 400, 459, 480
DpnII	GATC	4 cut(s)	102, 398, 457, 478
DrdI	GACNNNNNNGTC	1 cut(s)	27
DseDI	GACNNNNNNGTC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	546
FaiI	YATR	3 cut(s)	41, 47, 491
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	2 cut(s)	33, 554
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	308, 365
GluI	GCNGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	3 cut(s)	323, 433, 508
Hpy166II	GTNNAC	3 cut(s)	56, 255, 350
Hpy188III	TCNNGA	5 cut(s)	32, 106, 200, 218, 482
Hpy8I	GTNNAC	3 cut(s)	56, 255, 350
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	4 cut(s)	60, 164, 259, 612
HpyCH4IV	ACGT	3 cut(s)	13, 28, 173
HpyCH4V	TGCA	2 cut(s)	177, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	230, 285, 426
HpySE526I	ACGT	3 cut(s)	13, 28, 173
Kzo9I	GATC	4 cut(s)	102, 398, 457, 478
LpnPI	CCDG	9 cut(s)	2, 155, 194, 255, 313, 356, 374, 489, 529
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	308, 365
MaeII	ACGT	3 cut(s)	13, 28, 173
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	104, 400, 459, 480
MboI	GATC	4 cut(s)	102, 398, 457, 478
MboII	GAAGA	2 cut(s)	511, 569
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	3 cut(s)	5, 74, 90
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	196, 207, 261, 326
MseI	TTAA	5 cut(s)	78, 113, 378, 536, 564
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	4 cut(s)	102, 398, 457, 478
NmuCI	GTSAC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Ppu21I	YACGTR	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	293, 546
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	3 cut(s)	172, 254, 326
RsaNI	GTAC	3 cut(s)	171, 253, 325
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	5 cut(s)	78, 113, 378, 536, 564
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	102, 398, 457, 478
Sau96I	GGNCC	2 cut(s)	293, 546
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	5, 74, 90
SsiI	CCGC	2 cut(s)	245, 514
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	2 cut(s)	308, 365
TaaI	ACNGT	4 cut(s)	60, 164, 259, 612
TaiI	ACGT	3 cut(s)	16, 31, 176
TaqI	TCGA	2 cut(s)	31, 105
TasI	AATT	3 cut(s)	5, 74, 90
TatI	WGTACW	2 cut(s)	252, 324
Tru1I	TTAA	5 cut(s)	78, 113, 378, 536, 564
Tru9I	TTAA	5 cut(s)	78, 113, 378, 536, 564
TscAI	CASTG	2 cut(s)	262, 460
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	262, 460
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	2 cut(s)	308, 365
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.