Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Forward (+)

30114160 .. 30119989

Gene Structure 5830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGTCCGGACGCGGCGGCCGAGGCCGGCATTATTCCGGCGGTCGCACTAATCCCTCACAAGGCGGAGGCGGCAGAGGAAGTTTCAGCGGCGGAGGAAGTTCAGGCTCCTCAGCTCCGGCGCCGACACAAACTCGAGCTTATTTTCCACCGGTGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGACGACGGCCGTGGCTGCTGTGCCGCCGGCGTCGTCGAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGTACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACATCCATCATTACGATGTTACGATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCATCTTCTTCCAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACGCCACAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGCATTATACCAACTCAGAAGACAAAATGCCTTTGCTCCAACTCTGATTCAAGTTAATATTGCAGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCAAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTATCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGGGAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCTGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAACATAACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAGAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTTATCCCCAGATGGGGCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGATTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTATGAGTTTCTTGGTGCTTTGGTTGATGTGTGCAACAGTAAGGGGATGGAGTTTTTGCCCCAACCCTTGCTTCCAGTACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGCAAGGACGACAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTAAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGGGATGATAGTAGCCCATCAATAGCAGCAGTCGTTGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACACATATCCGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTACAGACAAAAAAGATTAAAGCCATCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGCCTGTGCCTCTTTGGAGGATGGATATATGCCAACAGTAACGTTTGTGGTAGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGACGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

952

Amino Acids

106.65

Weight (kDa)

9.58

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	103 - 245	2.1e-37	N-terminal domain of argonaute
PAZ	PF02170	327 - 438	1.3e-25	PAZ domain
ArgoL2	PF16488	448 - 498	9.8e-10	Argonaute linker 2 domain
ArgoMid	PF16487	509 - 586	5.3e-10	Mid domain of argonaute
Piwi	PF02171	598 - 917	2.2e-107	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1412, 1992
AarI	CACCTGC	1 cut(s)	2713
Acc36I	ACCTGC	2 cut(s)	334, 2713
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	2 cut(s)	5, 2815
AclI	AACGTT	1 cut(s)	2402
AclWI	GGATC	2 cut(s)	403, 618
AcoI	YGGCCR	4 cut(s)	16, 231, 1196, 2114
AcsI	RAATTY	4 cut(s)	312, 471, 1421, 2534
AcuI	CTGAAG	1 cut(s)	1769
AcyI	GRCGYC	2 cut(s)	119, 254
AfaI	GTAC	8 cut(s)	298, 758, 1169, 1707, 1740, 2415, 2500, 2669
AfiI	CCNNNNNNNGG	9 cut(s)	59, 293, 343, 418, 563, 1011, 1532, 1533, 2063
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	8 cut(s)	317, 695, 869, 908, 1009, 1208, 1224, 2492
AjnI	CCWGG	4 cut(s)	336, 1720, 2494, 2568
AjuI	GAANNNNNNNTTGG	2 cut(s)	1683, 1715
AloI	GAACNNNNNNTCC	2 cut(s)	2566, 2598
Alw21I	GWGCWC	3 cut(s)	2681, 2740, 2797
Alw26I	GTCTC	5 cut(s)	212, 351, 446, 1386, 1878
Alw44I	GTGCAC	2 cut(s)	2677, 2793
AlwI	GGATC	2 cut(s)	403, 618
AlwNI	CAGNNNCTG	1 cut(s)	2501
Ama87I	CYCGRG	3 cut(s)	132, 1338, 1464
Aor13HI	TCCGGA	2 cut(s)	5, 2815
ApaLI	GTGCAC	2 cut(s)	2677, 2793
ApeKI	GCWGC	7 cut(s)	239, 572, 575, 578, 2060, 2090, 2152
ApoI	RAATTY	4 cut(s)	312, 471, 1421, 2534
AsiGI	ACCGGT	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	121, 2152
AspS9I	GGNCC	4 cut(s)	512, 797, 1044, 2361
AsuC2I	CCSGG	2 cut(s)	288, 2065
AsuHPI	GGTGA	7 cut(s)	280, 433, 827, 931, 1006, 2150, 2768
AvaI	CYCGRG	3 cut(s)	132, 1338, 1464
AvaII	GGWCC	1 cut(s)	1044
BaeGI	GKGCMC	2 cut(s)	2681, 2797
BaeI	ACNNNNGTAYC	2 cut(s)	2490, 2523
BalI	TGGCCA	2 cut(s)	1198, 2116
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	1890, 2812
BbsI	GAAGAC	2 cut(s)	579, 844
Bbv12I	GWGCWC	3 cut(s)	2681, 2740, 2797
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	7 cut(s)	226, 559, 565, 587, 2072, 2102, 2164
BceAI	ACGGC	4 cut(s)	218, 246, 2565, 2756
BcgI	CGANNNNNNTGC	6 cut(s)	1139, 1173, 2127, 2161, 2414, 2448
BciT130I	CCWGG	4 cut(s)	338, 1722, 2496, 2570
BciVI	GTATCC	1 cut(s)	1624
BclI	TGATCA	2 cut(s)	1810, 2449
BcnI	CCSGG	2 cut(s)	288, 2065
BcoDI	GTCTC	5 cut(s)	212, 351, 446, 1386, 1878
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	8 cut(s)	573, 579, 1092, 2131, 2254, 2293, 2529, 2694
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	334, 2713
BfuI	GTATCC	1 cut(s)	1624
BglII	AGATCT	2 cut(s)	896, 2179
BlpI	GCTNAGC	1 cut(s)	1767
Bme1390I	CCNGG	6 cut(s)	288, 338, 1722, 2065, 2496, 2570
Bme18I	GGWCC	1 cut(s)	1044
BmeT110I	CYCGRG	3 cut(s)	132, 1338, 1464
BmgT120I	GGNCC	4 cut(s)	512, 797, 1044, 2361
BmiI	GGNNCC	3 cut(s)	106, 120, 171
BmrFI	CCNGG	6 cut(s)	288, 338, 1722, 2065, 2496, 2570
BmsI	GCATC	6 cut(s)	407, 1972, 1989, 2164, 2338, 2434
BoxI	GACNNNNGTC	1 cut(s)	1503
BpiI	GAAGAC	2 cut(s)	579, 844
BplI	GAGNNNNNCTC	4 cut(s)	1238, 1270, 2744, 2776
BpmI	CTGGAG	2 cut(s)	236, 1591
Bpu10I	CCTNAGC	1 cut(s)	109
Bpu1102I	GCTNAGC	1 cut(s)	1767
BpuMI	CCSGG	2 cut(s)	288, 2065
BsaAI	YACGTR	1 cut(s)	2667
BsaHI	GRCGYC	2 cut(s)	119, 254
BsaJI	CCNNGG	7 cut(s)	19, 234, 287, 531, 1337, 2064, 2569
BsaWI	WCCGGW	4 cut(s)	5, 148, 172, 2815
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 2031, 2061, 2787, 2817
Bsc4I	CCNNNNNNNGG	9 cut(s)	59, 293, 343, 418, 563, 1011, 1532, 1533, 2063
Bse118I	RCCGGY	3 cut(s)	24, 148, 250
Bse1I	ACTGG	6 cut(s)	219, 438, 1046, 1703, 2317, 2788
Bse3DI	GCAATG	3 cut(s)	515, 1222, 1481
BseAI	TCCGGA	2 cut(s)	5, 2815
BseBI	CCWGG	4 cut(s)	338, 1722, 2496, 2570
BseDI	CCNNGG	7 cut(s)	19, 234, 287, 531, 1337, 2064, 2569
BseGI	GGATG	8 cut(s)	360, 1680, 1717, 2053, 2074, 2353, 2386, 2762
BseLI	CCNNNNNNNGG	9 cut(s)	59, 293, 343, 418, 563, 1011, 1532, 1533, 2063
BseMI	GCAATG	3 cut(s)	515, 1222, 1481
BseMII	CTCAG	8 cut(s)	123, 176, 780, 847, 915, 1756, 1781, 1889
BseNI	ACTGG	6 cut(s)	219, 438, 1046, 1703, 2317, 2788
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	2 cut(s)	2681, 2797
BseX3I	CGGCCG	2 cut(s)	16, 231
BseXI	GCAGC	7 cut(s)	226, 559, 565, 587, 2072, 2102, 2164
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	6 cut(s)	19, 43, 234, 303, 2017, 2687
BshNI	GGYRCC	1 cut(s)	118
BshTI	ACCGGT	1 cut(s)	148
BsiEI	CGRYCG	6 cut(s)	19, 43, 234, 303, 2017, 2687
BsiHKAI	GWGCWC	3 cut(s)	2681, 2740, 2797
BsiHKCI	CYCGRG	3 cut(s)	132, 1338, 1464
BsiWI	CGTACG	1 cut(s)	2667
BslFI	GGGAC	3 cut(s)	1052, 1119, 1355
BslI	CCNNNNNNNGG	9 cut(s)	59, 293, 343, 418, 563, 1011, 1532, 1533, 2063
BsmAI	GTCTC	5 cut(s)	212, 351, 446, 1386, 1878
BsmBI	CGTCTC	3 cut(s)	212, 446, 1386
BsmFI	GGGAC	3 cut(s)	1052, 1119, 1355
BsoBI	CYCGRG	3 cut(s)	132, 1338, 1464
Bsp1286I	GDGCHC	5 cut(s)	1890, 2681, 2740, 2797, 2812
Bsp13I	TCCGGA	2 cut(s)	5, 2815
Bsp1720I	GCTNAGC	1 cut(s)	1767
BspCNI	CTCAG	8 cut(s)	122, 177, 781, 846, 916, 1755, 1780, 1888
BspEI	TCCGGA	2 cut(s)	5, 2815
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	106, 120, 171
BspMAI	CTGCAG	3 cut(s)	577, 583, 1096
BspMI	ACCTGC	2 cut(s)	334, 2713
BspPI	GGATC	2 cut(s)	403, 618
BspQI	GCTCTTC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	3 cut(s)	515, 1222, 1481
BsrFI	RCCGGY	3 cut(s)	24, 148, 250
BsrI	ACTGG	6 cut(s)	219, 438, 1046, 1703, 2317, 2788
BssAI	RCCGGY	3 cut(s)	24, 148, 250
BssECI	CCNNGG	7 cut(s)	19, 234, 287, 531, 1337, 2064, 2569
BssNI	GRCGYC	2 cut(s)	119, 254
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	4 cut(s)	338, 1722, 2496, 2570
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	2 cut(s)	119, 254
BstAPI	GCANNNNNTGC	1 cut(s)	2099
BstBAI	YACGTR	1 cut(s)	2667
BstC8I	GCNNGC	6 cut(s)	26, 252, 686, 1200, 1213, 2021
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	8 cut(s)	360, 1680, 1717, 2053, 2074, 2353, 2386, 2762
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 2152
BstMAI	GTCTC	5 cut(s)	212, 351, 446, 1386, 1878
BstMCI	CGRYCG	6 cut(s)	19, 43, 234, 303, 2017, 2687
BstNI	CCWGG	4 cut(s)	338, 1722, 2496, 2570
BstPAI	GACNNNNGTC	1 cut(s)	1503
BstSCI	CCNGG	6 cut(s)	286, 336, 1720, 2063, 2494, 2568
BstSFI	CTRYAG	8 cut(s)	573, 579, 1092, 2131, 2254, 2293, 2529, 2694
BstSLI	GKGCMC	2 cut(s)	2681, 2797
BstSNI	TACGTA	1 cut(s)	2667
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	7 cut(s)	226, 559, 565, 587, 2072, 2102, 2164
BstV2I	GAAGAC	2 cut(s)	579, 844
BstX2I	RGATCY	3 cut(s)	408, 896, 2179
BstXI	CCANNNNNNTGG	1 cut(s)	1502
BstYI	RGATCY	3 cut(s)	408, 896, 2179
BstZI	CGGCCG	2 cut(s)	16, 231
BsuI	GTATCC	1 cut(s)	1624
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	8 cut(s)	360, 1680, 1717, 2053, 2074, 2353, 2386, 2762
BtsI	GCAGTG	2 cut(s)	1544, 2622
BtsIMutI	CAGTG	9 cut(s)	212, 759, 951, 1507, 1544, 1883, 1968, 2314, 2622
BveI	ACCTGC	2 cut(s)	334, 2713
Cac8I	GCNNGC	6 cut(s)	26, 252, 686, 1200, 1213, 2021
CaiI	CAGNNNCTG	1 cut(s)	2501
CfoI	GCGC	2 cut(s)	121, 2152
Cfr10I	RCCGGY	3 cut(s)	24, 148, 250
Cfr13I	GGNCC	4 cut(s)	512, 797, 1044, 2361
CseI	GACGC	3 cut(s)	18, 243, 463
CsiI	ACCWGGT	1 cut(s)	2494
Csp6I	GTAC	8 cut(s)	297, 757, 1168, 1706, 1739, 2414, 2499, 2668
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	7 cut(s)	490, 1496, 1546, 2219, 2339, 2558, 2597
CviQI	GTAC	8 cut(s)	297, 757, 1168, 1706, 1739, 2414, 2499, 2668
DinI	GGCGCC	1 cut(s)	120
DraI	TTTAAA	1 cut(s)	1977
EaeI	YGGCCR	4 cut(s)	16, 231, 1196, 2114
EagI	CGGCCG	2 cut(s)	16, 231
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
EciI	GGCGGA	2 cut(s)	78, 105
EclXI	CGGCCG	2 cut(s)	16, 231
Eco105I	TACGTA	1 cut(s)	2667
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	1890, 2812
Eco47I	GGWCC	1 cut(s)	1044
Eco52I	CGGCCG	2 cut(s)	16, 231
Eco57I	CTGAAG	1 cut(s)	1769
Eco88I	CYCGRG	3 cut(s)	132, 1338, 1464
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	2361
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	4 cut(s)	336, 1720, 2494, 2568
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	1890, 2812
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	3 cut(s)	212, 446, 1386
FaeI	CATG	7 cut(s)	493, 1499, 1549, 2222, 2342, 2561, 2600
FalI	AAGNNNNNCTT	6 cut(s)	989, 1021, 1105, 1137, 1392, 1424
FaqI	GGGAC	3 cut(s)	1052, 1119, 1355
FatI	CATG	7 cut(s)	489, 1495, 1545, 2218, 2338, 2557, 2596
FauI	CCCGC	1 cut(s)	1005
FbaI	TGATCA	2 cut(s)	1810, 2449
FokI	GGATG	8 cut(s)	347, 1687, 1704, 2040, 2081, 2360, 2393, 2749
FriOI	GRGCYC	2 cut(s)	1890, 2812
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	2 cut(s)	120, 2151
GsuI	CTGGAG	2 cut(s)	236, 1591
HaeII	RGCGCY	1 cut(s)	122
HgaI	GACGC	3 cut(s)	18, 243, 463
HhaI	GCGC	2 cut(s)	121, 2152
Hin1I	GRCGYC	2 cut(s)	119, 254
Hin1II	CATG	7 cut(s)	493, 1499, 1549, 2222, 2342, 2561, 2600
Hin6I	GCGC	2 cut(s)	119, 2150
HinP1I	GCGC	2 cut(s)	119, 2150
HincII	GTYRAC	3 cut(s)	210, 1331, 2509
HindII	GTYRAC	3 cut(s)	210, 1331, 2509
HinfI	GANTC	7 cut(s)	865, 1220, 1403, 1820, 2565, 2619, 2759
HphI	GGTGA	7 cut(s)	280, 433, 827, 931, 1006, 2150, 2768
Hpy166II	GTNNAC	9 cut(s)	210, 759, 1119, 1234, 1331, 1961, 2509, 2679, 2795
Hpy188I	TCNGA	9 cut(s)	323, 451, 751, 836, 864, 2203, 2469, 2767, 2807
Hpy188III	TCNNGA	9 cut(s)	6, 614, 722, 980, 1340, 1508, 1608, 2280, 2816
Hpy8I	GTNNAC	9 cut(s)	210, 759, 1119, 1234, 1331, 1961, 2509, 2679, 2795
Hpy99I	CGWCG	6 cut(s)	226, 229, 232, 259, 262, 2771
HpyAV	CCTTC	7 cut(s)	256, 1945, 2200, 2260, 2306, 2352, 2822
HpyCH4IV	ACGT	3 cut(s)	1333, 2402, 2666
HpySE526I	ACGT	3 cut(s)	1333, 2402, 2666
Hsp92I	GRCGYC	2 cut(s)	119, 254
Hsp92II	CATG	7 cut(s)	493, 1499, 1549, 2222, 2342, 2561, 2600
HspAI	GCGC	2 cut(s)	119, 2150
KasI	GGCGCC	1 cut(s)	118
Kpn2I	TCCGGA	2 cut(s)	5, 2815
KroI	GCCGGC	2 cut(s)	24, 250
KroNI	GCCGGC	2 cut(s)	26, 252
Ksp22I	TGATCA	2 cut(s)	1810, 2449
LguI	GCTCTTC	1 cut(s)	488
LmnI	GCTCC	7 cut(s)	110, 118, 175, 199, 859, 1246, 2039
Lsp1109I	GCAGC	7 cut(s)	226, 559, 565, 587, 2072, 2102, 2164
LweI	GCATC	6 cut(s)	407, 1972, 1989, 2164, 2338, 2434
MabI	ACCWGGT	1 cut(s)	2494
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	3 cut(s)	1333, 2402, 2666
MaeIII	GTNAC	9 cut(s)	376, 919, 1303, 2008, 2047, 2122, 2334, 2398, 2756
MfeI	CAATTG	2 cut(s)	1257, 2139
MflI	RGATCY	3 cut(s)	408, 896, 2179
MhlI	GDGCHC	5 cut(s)	1890, 2681, 2740, 2797, 2812
MlsI	TGGCCA	2 cut(s)	1198, 2116
MluNI	TGGCCA	2 cut(s)	1198, 2116
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	2753
MmeI	TCCRAC	2 cut(s)	881, 2790
Mox20I	TGGCCA	2 cut(s)	1198, 2116
MreI	CGCCGGCG	1 cut(s)	250
MroI	TCCGGA	2 cut(s)	5, 2815
MroNI	GCCGGC	2 cut(s)	24, 250
MscI	TGGCCA	2 cut(s)	1198, 2116
MslI	CAYNNNNRTG	6 cut(s)	372, 917, 1500, 2160, 2163, 2595
Msp20I	TGGCCA	2 cut(s)	1198, 2116
MspA1I	CMGCKG	2 cut(s)	87, 578
MspR9I	CCNGG	6 cut(s)	288, 338, 1722, 2065, 2496, 2570
MunI	CAATTG	2 cut(s)	1257, 2139
MvaI	CCWGG	4 cut(s)	338, 1722, 2496, 2570
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	2 cut(s)	26, 252
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	2 cut(s)	288, 2065
NgoMIV	GCCGGC	2 cut(s)	24, 250
NlaIII	CATG	7 cut(s)	493, 1499, 1549, 2222, 2342, 2561, 2600
NlaIV	GGNNCC	3 cut(s)	106, 120, 171
NmeAIII	GCCGAG	2 cut(s)	44, 146
NmuCI	GTSAC	5 cut(s)	919, 1303, 2008, 2122, 2756
PaeR7I	CTCGAG	2 cut(s)	132, 1464
PaqCI	CACCTGC	1 cut(s)	2713
PciSI	GCTCTTC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdiI	GCCGGC	2 cut(s)	26, 252
PfeI	GAWTC	6 cut(s)	865, 1220, 1403, 1820, 2565, 2619
Pfl23II	CGTACG	1 cut(s)	2667
PflMI	CCANNNNNTGG	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	1720
PinAI	ACCGGT	1 cut(s)	148
Ple19I	CGATCG	2 cut(s)	2017, 2687
PleI	GAGTC	1 cut(s)	2753
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	2753
Ppu21I	YACGTR	1 cut(s)	2667
PshAI	GACNNNNGTC	1 cut(s)	1503
PsiI	TTATAA	2 cut(s)	1412, 1992
Psp1406I	AACGTT	1 cut(s)	2402
Psp6I	CCWGG	4 cut(s)	336, 1720, 2494, 2568
PspGI	CCWGG	4 cut(s)	336, 1720, 2494, 2568
PspLI	CGTACG	1 cut(s)	2667
PspN4I	GGNNCC	3 cut(s)	106, 120, 171
PspPI	GGNCC	4 cut(s)	512, 797, 1044, 2361
PspXI	VCTCGAGB	2 cut(s)	132, 1464
PstI	CTGCAG	3 cut(s)	577, 583, 1096
PstNI	CAGNNNCTG	1 cut(s)	2501
PsuI	RGATCY	3 cut(s)	408, 896, 2179
PvuI	CGATCG	2 cut(s)	2017, 2687
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	8 cut(s)	298, 758, 1169, 1707, 1740, 2415, 2500, 2669
RsaNI	GTAC	8 cut(s)	297, 757, 1168, 1706, 1739, 2414, 2499, 2668
RseI	CAYNNNNRTG	6 cut(s)	372, 917, 1500, 2160, 2163, 2595
SapI	GCTCTTC	1 cut(s)	488
Sau96I	GGNCC	4 cut(s)	512, 797, 1044, 2361
SchI	GAGTC	1 cut(s)	2753
ScrFI	CCNGG	6 cut(s)	288, 338, 1722, 2065, 2496, 2570
SduI	GDGCHC	5 cut(s)	1890, 2681, 2740, 2797, 2812
SexAI	ACCWGGT	1 cut(s)	2494
SfaNI	GCATC	6 cut(s)	407, 1972, 1989, 2164, 2338, 2434
SfcI	CTRYAG	8 cut(s)	573, 579, 1092, 2131, 2254, 2293, 2529, 2694
SfoI	GGCGCC	1 cut(s)	120
Sfr274I	CTCGAG	2 cut(s)	132, 1464
SgrAI	CRCCGGYG	2 cut(s)	148, 250
SinI	GGWCC	1 cut(s)	1044
SlaI	CTCGAG	2 cut(s)	132, 1464
SmiMI	CAYNNNNRTG	6 cut(s)	372, 917, 1500, 2160, 2163, 2595
SmlI	CTYRAG	2 cut(s)	132, 1464
SmoI	CTYRAG	2 cut(s)	132, 1464
SnaBI	TACGTA	1 cut(s)	2667
SspDI	GGCGCC	1 cut(s)	118
SspI	AATATT	4 cut(s)	877, 1154, 1919, 2488
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	6 cut(s)	286, 336, 1720, 2063, 2494, 2568
StyI	CCWWGG	1 cut(s)	531
TaiI	ACGT	3 cut(s)	1336, 2405, 2669
TaqI	TCGA	6 cut(s)	133, 260, 613, 1465, 2279, 2734
TaqII	GACCGA	1 cut(s)	2027
TatI	WGTACW	4 cut(s)	756, 1167, 1705, 2413
TauI	GCSGC	5 cut(s)	15, 18, 72, 90, 250
TfiI	GAWTC	6 cut(s)	865, 1220, 1403, 1820, 2565, 2619
TscAI	CASTG	9 cut(s)	219, 766, 958, 1507, 1544, 1883, 1975, 2314, 2629
TseFI	GTSAC	5 cut(s)	919, 1303, 2008, 2122, 2756
TseI	GCWGC	7 cut(s)	239, 572, 575, 578, 2060, 2090, 2152
Tsp45I	GTSAC	5 cut(s)	919, 1303, 2008, 2122, 2756
TspDTI	ATGAA	6 cut(s)	440, 506, 579, 1812, 2181, 2207
TspGWI	ACGGA	2 cut(s)	2123, 2784
TspRI	CASTG	9 cut(s)	219, 766, 958, 1507, 1544, 1883, 1975, 2314, 2629
Van91I	CCANNNNNTGG	1 cut(s)	563
VneI	GTGCAC	2 cut(s)	2677, 2793
VpaK11BI	GGWCC	1 cut(s)	1044
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	4 cut(s)	312, 471, 1421, 2534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	2 cut(s)	132, 1464
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.