Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

34100581 .. 34102623

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1254500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTTAACGGTGTTCAAGTGGATTTCTGGGCATATGTTGATTTTTCCCTATTGGACCAAAGTTTTAACTTCCGATTCTGTGAGGATTTGGTCCGTCCGTGCAACAGCAAGGGAGTGTTTGGTGGAAGGAACACTGTTGCCATTCGAAGAAGGATTCCTCTAGTTAGTGACATCCCCACAATCATCTTTGCTGCGGATGTTACCCATCCTCAACCTGGGAAGGACAGCAGTCTGTCAATTGCAGCTGTGGTGGCGTCAATAGATTGGCCACAGATAATCCAAGATCTTTATAGTGTAAACCAGGACCCTAACAATGGTCTTGTTGGAGGAGGAATGATCAGGGAGCATTTCAGAGCATTTCGACAAGAAACTGGCCGTAAACCAGAGAGAATTATCTTCTACATAGACGGAGTTAGTGAAGAACAATTTTGTCAAGTTCTGCTCTATGAAATGGATGCTATAAGAAAGGCTTGTCAATTGCTGCAGGAGGGATATCTGCCACCTCTTACTTTTGTTGTGGCACAGACTGGCACGGTTGCTGACACCCAGTTTTGTCATCCAAGGGAGTTCAACTGTTATCTCAACAGCCATGCTAGCATTCAGTTTGAATTGCTATCTTTTGTTAACATGCCTACGCATTACAATGTCCTTAATGATGAAAACAAATTTTCCCCTGATTGCTTGCGAGTGGGAACAGACAACATATGTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

239

Amino Acids

27.03

Weight (kDa)

5.2

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Piwi	PF02171	27 - 175	3.4e-26	Piwi domain
Piwi	PF02171	176 - 237	1.3e-06	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	2 cut(s)	266, 373
AcsI	RAATTY	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	215, 314
AgsI	TTSAA	3 cut(s)	17, 571, 608
AjnI	CCWGG	2 cut(s)	214, 300
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AoxI	GGCC	2 cut(s)	266, 373
ApeKI	GCWGC	3 cut(s)	191, 242, 481
ApoI	RAATTY	1 cut(s)	665
AspS9I	GGNCC	3 cut(s)	55, 91, 304
AsuII	TTCGAA	1 cut(s)	145
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	3 cut(s)	55, 91, 304
BalI	TGGCCA	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	178, 254, 468
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	2 cut(s)	216, 302
BclI	TGATCA	1 cut(s)	336
BfaI	CTAG	2 cut(s)	161, 594
BfmI	CTRYAG	1 cut(s)	482
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	192, 243, 482
BlsI	GCNGC	3 cut(s)	193, 244, 483
Bme1390I	CCNGG	2 cut(s)	216, 302
Bme18I	GGWCC	3 cut(s)	55, 91, 304
BmgT120I	GGNCC	3 cut(s)	55, 91, 304
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	216, 302
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	215, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 314
Bse1I	ACTGG	3 cut(s)	376, 532, 547
BseBI	CCWGG	2 cut(s)	216, 302
BseDI	CCNNGG	2 cut(s)	215, 560
BseGI	GGATG	5 cut(s)	171, 202, 205, 460, 556
BseLI	CCNNNNNNNGG	2 cut(s)	215, 314
BseNI	ACTGG	3 cut(s)	376, 532, 547
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	178, 254, 468
BshFI	GGCC	2 cut(s)	268, 375
BslI	CCNNNNNNNGG	2 cut(s)	215, 314
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	268, 375
Bsp119I	TTCGAA	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	283, 336
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	268, 375
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	486
BspOI	GCTAGC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	376, 532, 547
BssECI	CCNNGG	2 cut(s)	215, 560
BssMI	GATC	2 cut(s)	283, 336
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	560
Bst2UI	CCWGG	2 cut(s)	216, 302
Bst4CI	ACNGT	4 cut(s)	11, 136, 535, 575
BstACI	GRCGYC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	595, 683
BstF5I	GGATG	5 cut(s)	171, 202, 205, 460, 556
BstKTI	GATC	2 cut(s)	286, 339
BstMBI	GATC	2 cut(s)	283, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 594
BstNI	CCWGG	2 cut(s)	216, 302
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	214, 300
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	3 cut(s)	178, 254, 468
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	268, 375
BtsCI	GGATG	5 cut(s)	171, 202, 205, 460, 556
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	595, 683
Cfr13I	GGNCC	3 cut(s)	55, 91, 304
CseI	GACGC	1 cut(s)	243
CviAII	CATG	2 cut(s)	590, 628
CviJI	RGCY	5 cut(s)	245, 268, 375, 470, 588
CviKI_1	RGCY	5 cut(s)	245, 268, 375, 470, 588
DpnI	GATC	2 cut(s)	285, 338
DpnII	GATC	2 cut(s)	283, 336
EaeI	YGGCCR	2 cut(s)	266, 373
Eco130I	CCWWGG	1 cut(s)	560
Eco32I	GATATC	1 cut(s)	494
Eco47I	GGWCC	3 cut(s)	55, 91, 304
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	214, 300
EcoRV	GATATC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	2 cut(s)	593, 631
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FatI	CATG	2 cut(s)	589, 627
FauNDI	CATATG	2 cut(s)	34, 704
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	192, 243, 482
FokI	GGATG	5 cut(s)	158, 192, 209, 467, 543
Fsp4HI	GCNGC	3 cut(s)	192, 243, 482
FspBI	CTAG	2 cut(s)	161, 594
GluI	GCNGC	3 cut(s)	192, 243, 482
HaeIII	GGCC	2 cut(s)	268, 375
HgaI	GACGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	593, 631
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	2 cut(s)	75, 154
HpaI	GTTAAC	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	298, 380, 625
Hpy188I	TCNGA	2 cut(s)	74, 353
Hpy8I	GTNNAC	3 cut(s)	298, 380, 625
HpyAV	CCTTC	3 cut(s)	120, 144, 214
HpyCH4III	ACNGT	4 cut(s)	11, 136, 535, 575
HpyCH4V	TGCA	3 cut(s)	102, 242, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 594
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	593, 631
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	283, 336
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	3 cut(s)	178, 254, 468
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	161, 594
MaeIII	GTNAC	3 cut(s)	167, 199, 707
MalI	GATC	2 cut(s)	285, 338
MboI	GATC	2 cut(s)	283, 336
MboII	GAAGA	3 cut(s)	159, 388, 431
MfeI	CAATTG	2 cut(s)	237, 476
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	6 cut(s)	237, 390, 425, 476, 608, 665
MluNI	TGGCCA	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	7 cut(s)	76, 168, 219, 320, 323, 481, 513
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	4 cut(s)	6, 66, 624, 651
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	216, 302
MunI	CAATTG	2 cut(s)	237, 476
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	216, 302
MwoI	GCNNNNNNNGC	2 cut(s)	251, 594
NdeI	CATATG	2 cut(s)	34, 704
NdeII	GATC	2 cut(s)	283, 336
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	2 cut(s)	593, 631
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	631
NspV	TTCGAA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	75, 154
PkrI	GCNGC	3 cut(s)	193, 244, 483
PpuMI	RGGWCCY	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	214, 300
PspGI	CCWGG	2 cut(s)	214, 300
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	3 cut(s)	55, 91, 304
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	4 cut(s)	6, 66, 624, 651
SatI	GCNGC	3 cut(s)	192, 243, 482
Sau3AI	GATC	2 cut(s)	283, 336
Sau96I	GGNCC	3 cut(s)	55, 91, 304
ScrFI	CCNGG	2 cut(s)	216, 302
SetI	ASST	3 cut(s)	217, 247, 505
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	482
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	3 cut(s)	55, 91, 304
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	237, 390, 425, 476, 608, 665
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	161, 594
StyD4I	CCNGG	2 cut(s)	214, 300
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	4 cut(s)	11, 136, 535, 575
TaqI	TCGA	2 cut(s)	145, 361
TasI	AATT	6 cut(s)	237, 390, 425, 476, 608, 665
TfiI	GAWTC	2 cut(s)	75, 154
Tru1I	TTAA	4 cut(s)	6, 66, 624, 651
Tru9I	TTAA	4 cut(s)	6, 66, 624, 651
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	191, 242, 481
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	462, 672
TspGWI	ACGGA	3 cut(s)	83, 87, 423
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	55, 91, 304
XapI	RAATTY	1 cut(s)	665
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	2 cut(s)	161, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.