Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

59767286 .. 59772481

Gene Structure 5196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGTCCGGACGCGGTGGCCGGGGCCGGCATTATTCCGGCGCTCGCTCTAATCCATCCCACGGCCGAGGCGGCAGAGGAAATTTCAGAGGCGGAGGAAGTTCAGGCGCCGCAGCTCCGGCGCCGACTCAAACTAGAGCTCATTCTCCACCGGCGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGCCGACGGCCGTGGCTGCTGTGCCGCCGGCGTCGTCAAAGGCGGTAAGGTTTCCGCAGAGGCCGGGGTTCGGTACGGTGGGCAAGAAAATTCAGGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCACCATTACGATGTTACGATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTACACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCATCTTCTTCGAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTTACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACTCCACAAGAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGAGGTTTTCACCAAAGTCTACGCCCAACTCAGCTAGGACTTTCCCTTAACATTGATGTGTCAGCGAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCGAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAACGGACTATCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAGAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCGATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCTGGGCAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATAACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAGAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGCCGTGAAAAGAGTGTTTATCCCCAGATGGGGCAGTGGAACATGACAAATAAGAAAATGGTCAATGGAGGTAGATTGCAATTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTTTGAGTTTCTTGGGGCTTTGATTGATGTGTGCACCAGTAAGGGGATGGAGTTTTCTCCCCAACCCTTGCTTCCAGAACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGAAAGGACGGCAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACGGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGCGGACGAAACACTGTTTTAAATGATGCATTTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGTGATGACAGTAGCCCATCAATAGCAGCAGTCGTCGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACACAAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTACAAACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGCTTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATTTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAGGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

955

Amino Acids

107.13

Weight (kDa)

9.56

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	103 - 245	3.6e-37	N-terminal domain of argonaute
ArgoL1	PF08699	256 - 304	5.5e-18	Argonaute linker 1 domain
PAZ	PF02170	329 - 440	4.3e-25	PAZ domain
ArgoL2	PF16488	450 - 500	9.8e-10	Argonaute linker 2 domain
ArgoMid	PF16487	511 - 588	6.8e-09	Mid domain of argonaute
Piwi	PF02171	600 - 919	1.1e-107	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1418, 1998
AarI	CACCTGC	1 cut(s)	2719
Acc36I	ACCTGC	2 cut(s)	334, 2719
AccB1I	GGYRCC	2 cut(s)	104, 118
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	2 cut(s)	5, 2821
AclI	AACGTT	1 cut(s)	2408
AclWI	GGATC	2 cut(s)	403, 618
AcoI	YGGCCR	6 cut(s)	16, 61, 231, 1202, 1510, 2120
AcsI	RAATTY	5 cut(s)	79, 312, 471, 1427, 2540
AcuI	CTGAAG	1 cut(s)	1775
AcyI	GRCGYC	4 cut(s)	105, 119, 224, 254
AfaI	GTAC	7 cut(s)	298, 758, 1175, 1746, 2421, 2506, 2675
AflII	CTTAAG	1 cut(s)	1943
AgsI	TTSAA	6 cut(s)	695, 914, 1015, 1214, 1230, 2498
AjnI	CCWGG	4 cut(s)	336, 1726, 2500, 2574
AjuI	GAANNNNNNNTTGG	2 cut(s)	1689, 1721
AloI	GAACNNNNNNTCC	2 cut(s)	2572, 2604
Alw21I	GWGCWC	5 cut(s)	139, 1670, 2687, 2746, 2803
Alw26I	GTCTC	5 cut(s)	212, 351, 446, 1392, 1884
Alw44I	GTGCAC	3 cut(s)	1666, 2683, 2799
AlwI	GGATC	2 cut(s)	403, 618
AlwNI	CAGNNNCTG	1 cut(s)	2507
Ama87I	CYCGRG	2 cut(s)	1344, 1470
Aor13HI	TCCGGA	2 cut(s)	5, 2821
ApaLI	GTGCAC	3 cut(s)	1666, 2683, 2799
ApeKI	GCWGC	8 cut(s)	110, 239, 572, 575, 578, 2066, 2096, 2158
ApoI	RAATTY	5 cut(s)	79, 312, 471, 1427, 2540
AspLEI	GCGC	4 cut(s)	41, 107, 121, 2158
AspS9I	GGNCC	4 cut(s)	22, 512, 797, 1050
AsuC2I	CCSGG	2 cut(s)	20, 288
AsuHPI	GGTGA	8 cut(s)	433, 827, 836, 937, 1012, 2084, 2156, 2774
AsuII	TTCGAA	1 cut(s)	599
AvaI	CYCGRG	2 cut(s)	1344, 1470
AvaII	GGWCC	1 cut(s)	1050
BaeGI	GKGCMC	3 cut(s)	1670, 2687, 2803
BaeI	ACNNNNGTAYC	2 cut(s)	2496, 2529
BalI	TGGCCA	2 cut(s)	1204, 2122
BanI	GGYRCC	2 cut(s)	104, 118
BanII	GRGCYC	3 cut(s)	139, 1896, 2818
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	5 cut(s)	139, 1670, 2687, 2746, 2803
BbvI	GCAGC	8 cut(s)	122, 226, 559, 565, 587, 2078, 2108, 2170
BceAI	ACGGC	8 cut(s)	76, 218, 246, 1497, 1799, 2266, 2571, 2762
BcgI	CGANNNNNNTGC	6 cut(s)	1145, 1179, 2133, 2167, 2420, 2454
BciT130I	CCWGG	4 cut(s)	338, 1728, 2502, 2576
BciVI	GTATCC	1 cut(s)	1630
BclI	TGATCA	2 cut(s)	1816, 2455
BcnI	CCSGG	2 cut(s)	20, 288
BcoDI	GTCTC	5 cut(s)	212, 351, 446, 1392, 1884
BfaI	CTAG	3 cut(s)	132, 812, 869
BfmI	CTRYAG	7 cut(s)	573, 579, 1098, 2137, 2299, 2535, 2700
BfoI	RGCGCY	3 cut(s)	42, 108, 122
BfrI	CTTAAG	1 cut(s)	1943
BfuAI	ACCTGC	2 cut(s)	334, 2719
BfuI	GTATCC	1 cut(s)	1630
BglI	GCCNNNNNGGC	1 cut(s)	69
BglII	AGATCT	2 cut(s)	902, 2185
Bme1390I	CCNGG	6 cut(s)	20, 288, 338, 1728, 2502, 2576
Bme18I	GGWCC	1 cut(s)	1050
BmeT110I	CYCGRG	2 cut(s)	1344, 1470
BmgT120I	GGNCC	4 cut(s)	22, 512, 797, 1050
BmiI	GGNNCC	4 cut(s)	23, 106, 120, 171
BmrFI	CCNGG	6 cut(s)	20, 288, 338, 1728, 2502, 2576
BmsI	GCATC	6 cut(s)	407, 1978, 1995, 2170, 2344, 2440
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	4 cut(s)	1244, 1276, 2750, 2782
BpmI	CTGGAG	3 cut(s)	236, 853, 1597
Bpu14I	TTCGAA	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	20, 288
BsaAI	YACGTR	1 cut(s)	2673
BsaHI	GRCGYC	4 cut(s)	105, 119, 224, 254
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	8 cut(s)	19, 58, 64, 234, 287, 531, 1343, 2575
BsaWI	WCCGGW	3 cut(s)	5, 172, 2821
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 2037, 2067, 2793, 2823
Bse118I	RCCGGY	4 cut(s)	24, 148, 250, 2069
Bse1I	ACTGG	7 cut(s)	219, 438, 836, 1052, 1671, 2323, 2794
Bse3DI	GCAATG	3 cut(s)	515, 1228, 1487
BseAI	TCCGGA	2 cut(s)	5, 2821
BseBI	CCWGG	4 cut(s)	338, 1728, 2502, 2576
BseDI	CCNNGG	8 cut(s)	19, 58, 64, 234, 287, 531, 1343, 2575
BseGI	GGATG	6 cut(s)	53, 1686, 1723, 2059, 2359, 2768
BseMI	GCAATG	3 cut(s)	515, 1228, 1487
BseMII	CTCAG	8 cut(s)	176, 780, 878, 921, 1762, 1787, 1895, 2199
BseNI	ACTGG	7 cut(s)	219, 438, 836, 1052, 1671, 2323, 2794
BseSI	GKGCMC	3 cut(s)	1670, 2687, 2803
BseX3I	CGGCCG	2 cut(s)	61, 231
BseXI	GCAGC	8 cut(s)	122, 226, 559, 565, 587, 2078, 2108, 2170
BseYI	CCCAGC	1 cut(s)	1271
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	4 cut(s)	64, 234, 2023, 2693
BshNI	GGYRCC	2 cut(s)	104, 118
BsiEI	CGRYCG	4 cut(s)	64, 234, 2023, 2693
BsiHKAI	GWGCWC	5 cut(s)	139, 1670, 2687, 2746, 2803
BsiHKCI	CYCGRG	2 cut(s)	1344, 1470
BsiWI	CGTACG	1 cut(s)	2673
BslFI	GGGAC	3 cut(s)	1058, 1125, 1361
BsmAI	GTCTC	5 cut(s)	212, 351, 446, 1392, 1884
BsmBI	CGTCTC	3 cut(s)	212, 446, 1392
BsmFI	GGGAC	3 cut(s)	1058, 1125, 1361
Bso31I	GGTCTC	1 cut(s)	351
BsoBI	CYCGRG	2 cut(s)	1344, 1470
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	7 cut(s)	139, 1670, 1896, 2687, 2746, 2803, 2818
Bsp13I	TCCGGA	2 cut(s)	5, 2821
BspCNI	CTCAG	8 cut(s)	177, 781, 877, 922, 1761, 1786, 1894, 2200
BspEI	TCCGGA	2 cut(s)	5, 2821
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	23, 106, 120, 171
BspMAI	CTGCAG	3 cut(s)	577, 583, 1102
BspMI	ACCTGC	2 cut(s)	334, 2719
BspPI	GGATC	2 cut(s)	403, 618
BspQI	GCTCTTC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	104, 118
BspTI	CTTAAG	1 cut(s)	1943
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	3 cut(s)	515, 1228, 1487
BsrFI	RCCGGY	4 cut(s)	24, 148, 250, 2069
BsrI	ACTGG	7 cut(s)	219, 438, 836, 1052, 1671, 2323, 2794
BssAI	RCCGGY	4 cut(s)	24, 148, 250, 2069
BssECI	CCNNGG	8 cut(s)	19, 58, 64, 234, 287, 531, 1343, 2575
BssNI	GRCGYC	4 cut(s)	105, 119, 224, 254
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	4 cut(s)	338, 1728, 2502, 2576
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	4 cut(s)	105, 119, 224, 254
BstAFI	CTTAAG	1 cut(s)	1943
BstBAI	YACGTR	1 cut(s)	2673
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	7 cut(s)	26, 43, 252, 686, 1206, 1219, 2027
BstDSI	CCRYGG	2 cut(s)	58, 234
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	6 cut(s)	53, 1686, 1723, 2059, 2359, 2768
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	3 cut(s)	42, 108, 122
BstHHI	GCGC	4 cut(s)	41, 107, 121, 2158
BstMAI	GTCTC	5 cut(s)	212, 351, 446, 1392, 1884
BstMCI	CGRYCG	4 cut(s)	64, 234, 2023, 2693
BstNI	CCWGG	4 cut(s)	338, 1728, 2502, 2576
BstSCI	CCNGG	6 cut(s)	18, 286, 336, 1726, 2500, 2574
BstSFI	CTRYAG	7 cut(s)	573, 579, 1098, 2137, 2299, 2535, 2700
BstSLI	GKGCMC	3 cut(s)	1670, 2687, 2803
BstSNI	TACGTA	1 cut(s)	2673
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	8 cut(s)	122, 226, 559, 565, 587, 2078, 2108, 2170
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	3 cut(s)	408, 902, 2185
BstXI	CCANNNNNNTGG	1 cut(s)	1508
BstYI	RGATCY	3 cut(s)	408, 902, 2185
BstZI	CGGCCG	2 cut(s)	61, 231
BsuI	GTATCC	1 cut(s)	1630
BtgI	CCRYGG	2 cut(s)	58, 234
BtsCI	GGATG	6 cut(s)	53, 1686, 1723, 2059, 2359, 2768
BtsI	GCAGTG	2 cut(s)	1550, 2628
BtsIMutI	CAGTG	9 cut(s)	212, 759, 957, 1513, 1550, 1889, 1974, 2320, 2628
BveI	ACCTGC	2 cut(s)	334, 2719
Cac8I	GCNNGC	7 cut(s)	26, 43, 252, 686, 1206, 1219, 2027
CaiI	CAGNNNCTG	1 cut(s)	2507
CfoI	GCGC	4 cut(s)	41, 107, 121, 2158
Cfr10I	RCCGGY	4 cut(s)	24, 148, 250, 2069
Cfr13I	GGNCC	4 cut(s)	22, 512, 797, 1050
CseI	GACGC	4 cut(s)	18, 232, 243, 463
CsiI	ACCWGGT	1 cut(s)	2500
Csp6I	GTAC	7 cut(s)	297, 757, 1174, 1745, 2420, 2505, 2674
CviAII	CATG	7 cut(s)	490, 1502, 1552, 2225, 2345, 2564, 2603
CviQI	GTAC	7 cut(s)	297, 757, 1174, 1745, 2420, 2505, 2674
DinI	GGCGCC	2 cut(s)	106, 120
DraI	TTTAAA	1 cut(s)	1983
EaeI	YGGCCR	6 cut(s)	16, 61, 231, 1202, 1510, 2120
EagI	CGGCCG	2 cut(s)	61, 231
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
EciI	GGCGGA	2 cut(s)	105, 1980
Ecl136II	GAGCTC	1 cut(s)	137
EclXI	CGGCCG	2 cut(s)	61, 231
Eco105I	TACGTA	1 cut(s)	2673
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	3 cut(s)	139, 1896, 2818
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	1050
Eco52I	CGGCCG	2 cut(s)	61, 231
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	1775
Eco88I	CYCGRG	2 cut(s)	1344, 1470
EcoICRI	GAGCTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	4 cut(s)	336, 1726, 2500, 2574
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	1993
EcoT38I	GRGCYC	3 cut(s)	139, 1896, 2818
EgeI	GGCGCC	2 cut(s)	106, 120
EheI	GGCGCC	2 cut(s)	106, 120
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	3 cut(s)	212, 446, 1392
FaeI	CATG	7 cut(s)	493, 1505, 1555, 2228, 2348, 2567, 2606
FalI	AAGNNNNNCTT	8 cut(s)	995, 1027, 1111, 1143, 1398, 1430, 2353, 2385
FaqI	GGGAC	3 cut(s)	1058, 1125, 1361
FatI	CATG	7 cut(s)	489, 1501, 1551, 2224, 2344, 2563, 2602
FauI	CCCGC	1 cut(s)	1011
FbaI	TGATCA	2 cut(s)	1816, 2455
FblI	GTMKAC	1 cut(s)	853
FokI	GGATG	6 cut(s)	40, 1693, 1710, 2046, 2366, 2755
FriOI	GRGCYC	3 cut(s)	139, 1896, 2818
FspBI	CTAG	3 cut(s)	132, 812, 869
GlaI	GCGC	4 cut(s)	40, 106, 120, 2157
GsaI	CCCAGC	1 cut(s)	1275
GsuI	CTGGAG	3 cut(s)	236, 853, 1597
HaeII	RGCGCY	3 cut(s)	42, 108, 122
HgaI	GACGC	4 cut(s)	18, 232, 243, 463
HhaI	GCGC	4 cut(s)	41, 107, 121, 2158
Hin1I	GRCGYC	4 cut(s)	105, 119, 224, 254
Hin1II	CATG	7 cut(s)	493, 1505, 1555, 2228, 2348, 2567, 2606
Hin6I	GCGC	4 cut(s)	39, 105, 119, 2156
HinP1I	GCGC	4 cut(s)	39, 105, 119, 2156
HincII	GTYRAC	3 cut(s)	210, 1337, 2515
HindII	GTYRAC	3 cut(s)	210, 1337, 2515
HinfI	GANTC	8 cut(s)	124, 1210, 1226, 1409, 1826, 2571, 2625, 2765
HphI	GGTGA	8 cut(s)	433, 827, 836, 937, 1012, 2084, 2156, 2774
Hpy188III	TCNNGA	9 cut(s)	6, 614, 722, 986, 1346, 1614, 1709, 2286, 2822
Hpy99I	CGWCG	5 cut(s)	226, 232, 259, 2108, 2287
HpyAV	CCTTC	8 cut(s)	812, 1951, 2206, 2266, 2312, 2358, 2381, 2828
HpyCH4IV	ACGT	3 cut(s)	1339, 2408, 2672
HpySE526I	ACGT	3 cut(s)	1339, 2408, 2672
Hsp92I	GRCGYC	4 cut(s)	105, 119, 224, 254
Hsp92II	CATG	7 cut(s)	493, 1505, 1555, 2228, 2348, 2567, 2606
HspAI	GCGC	4 cut(s)	39, 105, 119, 2156
KasI	GGCGCC	2 cut(s)	104, 118
Kpn2I	TCCGGA	2 cut(s)	5, 2821
KroI	GCCGGC	2 cut(s)	24, 250
KroNI	GCCGGC	2 cut(s)	26, 252
Ksp22I	TGATCA	2 cut(s)	1816, 2455
LguI	GCTCTTC	1 cut(s)	488
LmnI	GCTCC	5 cut(s)	118, 175, 199, 1252, 2045
Lsp1109I	GCAGC	8 cut(s)	122, 226, 559, 565, 587, 2078, 2108, 2170
LweI	GCATC	6 cut(s)	407, 1978, 1995, 2170, 2344, 2440
MabI	ACCWGGT	1 cut(s)	2500
MaeI	CTAG	3 cut(s)	132, 812, 869
MaeII	ACGT	3 cut(s)	1339, 2408, 2672
MaeIII	GTNAC	9 cut(s)	376, 925, 1309, 2014, 2053, 2128, 2340, 2404, 2762
MboII	GAAGA	9 cut(s)	505, 579, 585, 588, 1015, 1073, 1145, 1852, 2014
MfeI	CAATTG	2 cut(s)	1263, 2145
MflI	RGATCY	3 cut(s)	408, 902, 2185
MhlI	GDGCHC	7 cut(s)	139, 1670, 1896, 2687, 2746, 2803, 2818
MlsI	TGGCCA	2 cut(s)	1204, 2122
MluNI	TGGCCA	2 cut(s)	1204, 2122
Mly113I	GGCGCC	2 cut(s)	105, 119
MlyI	GAGTC	2 cut(s)	118, 2759
Mox20I	TGGCCA	2 cut(s)	1204, 2122
Mph1103I	ATGCAT	1 cut(s)	1993
MreI	CGCCGGCG	1 cut(s)	250
MroI	TCCGGA	2 cut(s)	5, 2821
MroNI	GCCGGC	2 cut(s)	24, 250
MscI	TGGCCA	2 cut(s)	1204, 2122
MslI	CAYNNNNRTG	7 cut(s)	372, 890, 923, 1506, 2166, 2169, 2601
Msp20I	TGGCCA	2 cut(s)	1204, 2122
MspA1I	CMGCKG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	1943
MspR9I	CCNGG	6 cut(s)	20, 288, 338, 1728, 2502, 2576
MunI	CAATTG	2 cut(s)	1263, 2145
MvaI	CCWGG	4 cut(s)	338, 1728, 2502, 2576
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	2 cut(s)	26, 252
NarI	GGCGCC	2 cut(s)	105, 119
NciI	CCSGG	2 cut(s)	20, 288
NgoMIV	GCCGGC	2 cut(s)	24, 250
NlaIII	CATG	7 cut(s)	493, 1505, 1555, 2228, 2348, 2567, 2606
NlaIV	GGNNCC	4 cut(s)	23, 106, 120, 171
NmeAIII	GCCGAG	2 cut(s)	89, 146
NmuCI	GTSAC	5 cut(s)	925, 1309, 2014, 2128, 2762
NsiI	ATGCAT	1 cut(s)	1993
NspV	TTCGAA	1 cut(s)	599
PaeR7I	CTCGAG	1 cut(s)	1470
PaqCI	CACCTGC	1 cut(s)	2719
PciSI	GCTCTTC	1 cut(s)	488
PdiI	GCCGGC	2 cut(s)	26, 252
PfeI	GAWTC	6 cut(s)	1210, 1226, 1409, 1826, 2571, 2625
Pfl23II	CGTACG	1 cut(s)	2673
PflMI	CCANNNNNTGG	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	1726
Ple19I	CGATCG	2 cut(s)	2023, 2693
PleI	GAGTC	2 cut(s)	118, 2759
PluTI	GGCGCC	2 cut(s)	108, 122
PpsI	GAGTC	2 cut(s)	118, 2759
Ppu21I	YACGTR	1 cut(s)	2673
PsiI	TTATAA	2 cut(s)	1418, 1998
Psp124BI	GAGCTC	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	2408
Psp6I	CCWGG	4 cut(s)	336, 1726, 2500, 2574
PspFI	CCCAGC	1 cut(s)	1271
PspGI	CCWGG	4 cut(s)	336, 1726, 2500, 2574
PspLI	CGTACG	1 cut(s)	2673
PspN4I	GGNNCC	4 cut(s)	23, 106, 120, 171
PspPI	GGNCC	4 cut(s)	22, 512, 797, 1050
PspXI	VCTCGAGB	1 cut(s)	1470
PstI	CTGCAG	3 cut(s)	577, 583, 1102
PstNI	CAGNNNCTG	1 cut(s)	2507
PsuI	RGATCY	3 cut(s)	408, 902, 2185
PvuI	CGATCG	2 cut(s)	2023, 2693
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	7 cut(s)	298, 758, 1175, 1746, 2421, 2506, 2675
RsaNI	GTAC	7 cut(s)	297, 757, 1174, 1745, 2420, 2505, 2674
RseI	CAYNNNNRTG	7 cut(s)	372, 890, 923, 1506, 2166, 2169, 2601
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	488
Sau96I	GGNCC	4 cut(s)	22, 512, 797, 1050
SchI	GAGTC	2 cut(s)	118, 2759
ScrFI	CCNGG	6 cut(s)	20, 288, 338, 1728, 2502, 2576
SduI	GDGCHC	7 cut(s)	139, 1670, 1896, 2687, 2746, 2803, 2818
SexAI	ACCWGGT	1 cut(s)	2500
SfaNI	GCATC	6 cut(s)	407, 1978, 1995, 2170, 2344, 2440
SfcI	CTRYAG	7 cut(s)	573, 579, 1098, 2137, 2299, 2535, 2700
SfoI	GGCGCC	2 cut(s)	106, 120
Sfr274I	CTCGAG	1 cut(s)	1470
SfuI	TTCGAA	1 cut(s)	599
SgrAI	CRCCGGYG	2 cut(s)	148, 250
SinI	GGWCC	1 cut(s)	1050
SlaI	CTCGAG	1 cut(s)	1470
SmiMI	CAYNNNNRTG	7 cut(s)	372, 890, 923, 1506, 2166, 2169, 2601
SmlI	CTYRAG	2 cut(s)	1470, 1943
SmoI	CTYRAG	2 cut(s)	1470, 1943
SnaBI	TACGTA	1 cut(s)	2673
SspDI	GGCGCC	2 cut(s)	104, 118
SspI	AATATT	3 cut(s)	1160, 1925, 2494
SspMI	CTAG	3 cut(s)	132, 812, 869
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	6 cut(s)	18, 286, 336, 1726, 2500, 2574
StyI	CCWWGG	1 cut(s)	531
TaiI	ACGT	3 cut(s)	1342, 2411, 2675
TaqI	TCGA	5 cut(s)	599, 613, 1471, 2285, 2740
TaqII	GACCGA	1 cut(s)	2033
TatI	WGTACW	2 cut(s)	756, 1173
TauI	GCSGC	4 cut(s)	72, 110, 155, 250
TfiI	GAWTC	6 cut(s)	1210, 1226, 1409, 1826, 2571, 2625
TscAI	CASTG	9 cut(s)	219, 766, 964, 1513, 1550, 1889, 1981, 2320, 2635
TseFI	GTSAC	5 cut(s)	925, 1309, 2014, 2128, 2762
TseI	GCWGC	8 cut(s)	110, 239, 572, 575, 578, 2066, 2096, 2158
Tsp45I	GTSAC	5 cut(s)	925, 1309, 2014, 2128, 2762
TspDTI	ATGAA	6 cut(s)	440, 506, 579, 1818, 2187, 2213
TspGWI	ACGGA	3 cut(s)	1104, 1877, 2129
TspRI	CASTG	9 cut(s)	219, 766, 964, 1513, 1550, 1889, 1981, 2320, 2635
Van91I	CCANNNNNTGG	1 cut(s)	563
Vha464I	CTTAAG	1 cut(s)	1943
VneI	GTGCAC	3 cut(s)	1666, 2683, 2799
VpaK11BI	GGWCC	1 cut(s)	1050
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	5 cut(s)	79, 312, 471, 1427, 2540
XcmI	CCANNNNNNNNNTGG	2 cut(s)	334, 1678
XhoI	CTCGAG	1 cut(s)	1470
XmiI	GTMKAC	1 cut(s)	853
XspI	CTAG	3 cut(s)	132, 812, 869
Zsp2I	ATGCAT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.