Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

62137146 .. 62142482

Gene Structure 5337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG368000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGTCAGGGCGCGGCGGCCGAGGCCGGCATTATTCCGGCGCTCGATCTAATCCATCGCAGGGCGGAGGCGGCGGAGGAAGTTCAGGCGCCGGGATTCAGACTCCTGCTTATTCTCCACCAGCGGCCTCGTCAAGTTCGGCTCCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGCAGACGACGACGGACTTGGCTGTCGTGCCGCCGGCGTCGTCGAAGGCGGTGAGCTTTCCGAAGAGGCCGAATTTCGGGACGGTCGGCAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTACAGGTTGCAGACAGAGACGTTCACCATTACAATGTTACCATAACCCCAGAAGTTGCATCCAAAAAGATCCACAGGGAGGTGATGGACCAACTGGTCCGTTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCCAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTACTGCAGCTGCAGGGTCTTCAACTTCTTTGAAAAGAAAGGATCGAGAGTTTAAGGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGGCAATACAAGTTCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAGTATTGGAGAGGTTTTTACCAGAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCCAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTGTCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAAAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCCGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATTACACAGATGATTAGGGAGAAAACCAACAATAGAGACGATAAAGAATCTCTTATAAGGAGGGAATTTGGATTACAAGTGAAAGAGGAAATGGCATTGGTTAAAGCTCGAGTTTTACCATCTCCATTGCTTAAATACCATGACAGTGGTCGTGAAAAGAGTGTTTATCCCCAGATGGGTCAGTGGAACATGACAAACAAGAAAATGGTCAATGGAGGTAGATTGCAAGTCTGGGCATTTGTCAATTTCTCCAGAGTATCCCAAGATATTACTTTTGAGTTTCTTGGGGCTTTGGTTGATGTGTGCAACAGTAAGGGGATGGAGTTTTTTCCCGAACCCCTGCTTCCAGTACAGTTTTCTCATCCTGGACAAATTGAGAGGGTACTCAGGGATATTCACAAGTTGTCTGCTCAGCAAGGACGACAACTTCAGTTATTGATTGTCATTTTGCCTGATCAAAGTGATTCATCTTATGGGAAGATCAAACGAACCTGTGAAACAGAATTAGGAATTGTGTCTCAGTGCTTAGAGCCCCAGAAAGTAAAAAGGTGGAATACACAATATTTGGAAAATCTTGCCCTTAAGATCAATGTGAAGGTTGGTGGACGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCACTTCCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCCGCCGGGGATGACAGTAGCCCATCAATTGCAGCAGTCGTTGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCATTGCCTTCTACAGACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTCTGTTACATGAGGTGGATGCTATAAGAAGGGCCTGTGCCTCTTTGGAGGAAGGATATATGCCAACAGTAACGTTTGTGGTGGTACAGAAAAGGCATCATACTCGCCTTTTCCCTGCTGATCATAGCAATCGTGGTCAGATGGACAGGAGTGGCAATATTCAACCAGGTACTGTTGTTGACACCGAGATTTGCCACCCTACAGAATTTGACTTTTATCTCAACAGTCATGCTGGAATCCAGGGAACGAGCCGTCCAGCACACTACCATGTTTTGTTTGACGAAAACAGATTCACTGCCGATGGTTTGCAAGTTTTAACAAACAATTTATGTTATACGTACGCAAGGTGCACCCGATCGGTTTCTATAGTGCCACCTGCTTACTATGCTCATCTGGTAGCTTTTCGAGCACGGCATTACATTGAGGGTGACTCATCCGATGGAGGTTCTACAACTGGTGGGGGTGCACAGGTTCTCCGAGCCCTTCCGGAGATCAAAGAAAATGTGAAAGAAGTGATGTTTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

936

Amino Acids

105.12

Weight (kDa)

9.42

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	93 - 228	1.2e-32	N-terminal domain of argonaute
ArgoL1	PF08699	239 - 287	2.6e-18	Argonaute linker 1 domain
PAZ	PF02170	312 - 423	3.9e-25	PAZ domain
ArgoL2	PF16488	433 - 483	4e-10	Argonaute linker 2 domain
ArgoMid	PF16487	494 - 571	1.9e-09	Mid domain of argonaute
Piwi	PF02171	583 - 901	1e-107	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1367, 1947
AarI	CACCTGC	1 cut(s)	2665
AasI	GACNNNNNNGTC	2 cut(s)	209, 404
Acc36I	ACCTGC	1 cut(s)	2665
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	2767
AclI	AACGTT	1 cut(s)	2354
AclWI	GGATC	2 cut(s)	373, 588
AcoI	YGGCCR	3 cut(s)	16, 1151, 2069
AcsI	RAATTY	5 cut(s)	259, 282, 441, 1376, 2486
AcuI	CTGAAG	1 cut(s)	1724
AcyI	GRCGYC	2 cut(s)	87, 224
AfaI	GTAC	9 cut(s)	312, 541, 707, 1124, 1662, 1695, 2367, 2452, 2621
AfiI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 966, 1487, 2018
AflII	CTTAAG	1 cut(s)	1892
AgsI	TTSAA	8 cut(s)	287, 561, 571, 863, 964, 1163, 1179, 2444
AjnI	CCWGG	6 cut(s)	306, 501, 654, 1675, 2446, 2520
AloI	GAACNNNNNNTCC	2 cut(s)	2518, 2550
Alw21I	GWGCWC	3 cut(s)	2633, 2692, 2749
Alw26I	GTCTC	4 cut(s)	321, 416, 1341, 1833
Alw44I	GTGCAC	2 cut(s)	2629, 2745
AlwI	GGATC	2 cut(s)	373, 588
AlwNI	CAGNNNCTG	1 cut(s)	2453
Ama87I	CYCGRG	2 cut(s)	1293, 1419
Aor13HI	TCCGGA	1 cut(s)	2767
ApaLI	GTGCAC	2 cut(s)	2629, 2745
ApeKI	GCWGC	4 cut(s)	545, 548, 2045, 2107
ApoI	RAATTY	5 cut(s)	259, 282, 441, 1376, 2486
AspLEI	GCGC	4 cut(s)	12, 41, 89, 2107
AspS9I	GGNCC	6 cut(s)	397, 406, 482, 746, 999, 2313
AsuC2I	CCSGG	2 cut(s)	91, 2020
AsuHPI	GGTGA	8 cut(s)	250, 326, 403, 776, 886, 961, 2105, 2720
AvaI	CYCGRG	2 cut(s)	1293, 1419
AvaII	GGWCC	3 cut(s)	397, 406, 999
BaeGI	GKGCMC	2 cut(s)	2633, 2749
BaeI	ACNNNNGTAYC	2 cut(s)	2442, 2475
BalI	TGGCCA	2 cut(s)	1153, 2071
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	2 cut(s)	1845, 2764
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	3 cut(s)	2633, 2692, 2749
BbvI	GCAGC	4 cut(s)	535, 557, 2057, 2119
BceAI	ACGGC	3 cut(s)	2212, 2517, 2708
BcgI	CGANNNNNNTGC	6 cut(s)	1094, 1128, 2082, 2116, 2366, 2400
BciT130I	CCWGG	6 cut(s)	308, 503, 656, 1677, 2448, 2522
BciVI	GTATCC	1 cut(s)	1579
BclI	TGATCA	2 cut(s)	1765, 2401
BcnI	CCSGG	2 cut(s)	91, 2020
BcoDI	GTCTC	4 cut(s)	321, 416, 1341, 1833
BfaI	CTAG	2 cut(s)	761, 818
BfmI	CTRYAG	9 cut(s)	188, 543, 549, 1047, 2086, 2206, 2245, 2481, 2646
BfoI	RGCGCY	2 cut(s)	42, 90
BfrI	CTTAAG	1 cut(s)	1892
BfuAI	ACCTGC	1 cut(s)	2665
BfuI	GTATCC	1 cut(s)	1579
BglII	AGATCT	2 cut(s)	851, 2134
BlpI	GCTNAGC	1 cut(s)	1722
Bme1390I	CCNGG	8 cut(s)	91, 308, 503, 656, 1677, 2020, 2448, 2522
Bme18I	GGWCC	3 cut(s)	397, 406, 999
BmeT110I	CYCGRG	2 cut(s)	1293, 1419
BmgT120I	GGNCC	6 cut(s)	397, 406, 482, 746, 999, 2313
BmiI	GGNNCC	2 cut(s)	88, 141
BmrFI	CCNGG	8 cut(s)	91, 308, 503, 656, 1677, 2020, 2448, 2522
BmsI	GCATC	6 cut(s)	377, 1927, 1944, 2119, 2290, 2386
BoxI	GACNNNNGTC	1 cut(s)	1458
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	4 cut(s)	1193, 1225, 2696, 2728
BpmI	CTGGAG	1 cut(s)	1546
Bpu1102I	GCTNAGC	1 cut(s)	1722
BpuMI	CCSGG	2 cut(s)	91, 2020
BsaAI	YACGTR	1 cut(s)	2619
BsaHI	GRCGYC	2 cut(s)	87, 224
BsaJI	CCNNGG	5 cut(s)	19, 501, 1292, 2019, 2521
BsaWI	WCCGGW	2 cut(s)	145, 2767
BsaXI	ACNNNNNCTCC	6 cut(s)	164, 194, 1986, 2016, 2739, 2769
Bsc4I	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 966, 1487, 2018
Bse118I	RCCGGY	2 cut(s)	24, 220
Bse1I	ACTGG	5 cut(s)	408, 1001, 1658, 2269, 2740
Bse3DI	GCAATG	4 cut(s)	485, 1177, 1436, 2196
BseAI	TCCGGA	1 cut(s)	2767
BseBI	CCWGG	6 cut(s)	308, 503, 656, 1677, 2448, 2522
BseDI	CCNNGG	5 cut(s)	19, 501, 1292, 2019, 2521
BseGI	GGATG	7 cut(s)	368, 1635, 1672, 2008, 2029, 2305, 2714
BseLI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 966, 1487, 2018
BseMI	GCAATG	4 cut(s)	485, 1177, 1436, 2196
BseMII	CTCAG	7 cut(s)	149, 729, 870, 1711, 1736, 1844, 2145
BseNI	ACTGG	5 cut(s)	408, 1001, 1658, 2269, 2740
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	2 cut(s)	2633, 2749
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	535, 557, 2057, 2119
BseYI	CCCAGC	2 cut(s)	813, 918
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	3 cut(s)	19, 273, 2639
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	3 cut(s)	19, 273, 2639
BsiHKAI	GWGCWC	3 cut(s)	2633, 2692, 2749
BsiHKCI	CYCGRG	2 cut(s)	1293, 1419
BsiSI	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1221, 2019, 2768
BsiWI	CGTACG	1 cut(s)	2619
BslFI	GGGAC	4 cut(s)	280, 1007, 1074, 1310
BslI	CCNNNNNNNGG	8 cut(s)	59, 263, 313, 388, 533, 966, 1487, 2018
BsmAI	GTCTC	4 cut(s)	321, 416, 1341, 1833
BsmBI	CGTCTC	3 cut(s)	321, 416, 1341
BsmFI	GGGAC	4 cut(s)	280, 1007, 1074, 1310
BsoBI	CYCGRG	2 cut(s)	1293, 1419
Bsp1286I	GDGCHC	5 cut(s)	1845, 2633, 2692, 2749, 2764
Bsp13I	TCCGGA	1 cut(s)	2767
Bsp1720I	GCTNAGC	1 cut(s)	1722
BspCNI	CTCAG	7 cut(s)	150, 730, 871, 1710, 1735, 1843, 2146
BspEI	TCCGGA	1 cut(s)	2767
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	88, 141
BspMAI	CTGCAG	4 cut(s)	192, 547, 553, 1051
BspMI	ACCTGC	1 cut(s)	2665
BspPI	GGATC	2 cut(s)	373, 588
BspQI	GCTCTTC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	1892
BsrDI	GCAATG	4 cut(s)	485, 1177, 1436, 2196
BsrFI	RCCGGY	2 cut(s)	24, 220
BsrI	ACTGG	5 cut(s)	408, 1001, 1658, 2269, 2740
BssAI	RCCGGY	2 cut(s)	24, 220
BssECI	CCNNGG	5 cut(s)	19, 501, 1292, 2019, 2521
BssNI	GRCGYC	2 cut(s)	87, 224
Bst2UI	CCWGG	6 cut(s)	308, 503, 656, 1677, 2448, 2522
Bst6I	CTCTTC	2 cut(s)	245, 458
BstACI	GRCGYC	2 cut(s)	87, 224
BstAFI	CTTAAG	1 cut(s)	1892
BstAPI	GCANNNNNTGC	1 cut(s)	2054
BstBAI	YACGTR	1 cut(s)	2619
BstC8I	GCNNGC	4 cut(s)	26, 222, 1155, 1168
BstDEI	CTNAG	9 cut(s)	158, 683, 738, 879, 1697, 1722, 1830, 1837, 2154
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	7 cut(s)	368, 1635, 1672, 2008, 2029, 2305, 2714
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	42, 90
BstHHI	GCGC	4 cut(s)	12, 41, 89, 2107
BstMAI	GTCTC	4 cut(s)	321, 416, 1341, 1833
BstMCI	CGRYCG	3 cut(s)	19, 273, 2639
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 69, 465, 1154, 1163, 1201, 2054, 2666, 2687
BstNI	CCWGG	6 cut(s)	308, 503, 656, 1677, 2448, 2522
BstPAI	GACNNNNGTC	1 cut(s)	1458
BstSCI	CCNGG	8 cut(s)	89, 306, 501, 654, 1675, 2018, 2446, 2520
BstSFI	CTRYAG	9 cut(s)	188, 543, 549, 1047, 2086, 2206, 2245, 2481, 2646
BstSLI	GKGCMC	2 cut(s)	2633, 2749
BstSNI	TACGTA	1 cut(s)	2619
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	535, 557, 2057, 2119
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	3 cut(s)	378, 851, 2134
BstXI	CCANNNNNNTGG	1 cut(s)	1457
BstYI	RGATCY	3 cut(s)	378, 851, 2134
BstZI	CGGCCG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	1579
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	7 cut(s)	368, 1635, 1672, 2008, 2029, 2305, 2714
BtsI	GCAGTG	2 cut(s)	185, 2574
BtsIMutI	CAGTG	9 cut(s)	185, 708, 906, 1462, 1499, 1838, 1923, 2266, 2574
BveI	ACCTGC	1 cut(s)	2665
Cac8I	GCNNGC	4 cut(s)	26, 222, 1155, 1168
CaiI	CAGNNNCTG	1 cut(s)	2453
CfoI	GCGC	4 cut(s)	12, 41, 89, 2107
Cfr10I	RCCGGY	2 cut(s)	24, 220
Cfr13I	GGNCC	6 cut(s)	397, 406, 482, 746, 999, 2313
CseI	GACGC	2 cut(s)	213, 433
CsiI	ACCWGGT	1 cut(s)	2446
Csp6I	GTAC	9 cut(s)	311, 540, 706, 1123, 1661, 1694, 2366, 2451, 2620
CviAII	CATG	7 cut(s)	460, 1451, 1501, 2171, 2291, 2510, 2549
CviQI	GTAC	9 cut(s)	311, 540, 706, 1123, 1661, 1694, 2366, 2451, 2620
DdeI	CTNAG	9 cut(s)	158, 683, 738, 879, 1697, 1722, 1830, 1837, 2154
DinI	GGCGCC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	1932
DrdI	GACNNNNNNGTC	2 cut(s)	209, 404
DseDI	GACNNNNNNGTC	2 cut(s)	209, 404
EaeI	YGGCCR	3 cut(s)	16, 1151, 2069
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	245, 458
EarI	CTCTTC	2 cut(s)	245, 458
EciI	GGCGGA	2 cut(s)	78, 87
EclXI	CGGCCG	1 cut(s)	16
Eco105I	TACGTA	1 cut(s)	2619
Eco24I	GRGCYC	2 cut(s)	1845, 2764
Eco47I	GGWCC	3 cut(s)	397, 406, 999
Eco52I	CGGCCG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	1724
Eco88I	CYCGRG	2 cut(s)	1293, 1419
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	2313
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	6 cut(s)	306, 501, 654, 1675, 2446, 2520
EcoT38I	GRGCYC	2 cut(s)	1845, 2764
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	3 cut(s)	321, 416, 1341
FaeI	CATG	7 cut(s)	463, 1454, 1504, 2174, 2294, 2513, 2552
FalI	AAGNNNNNCTT	6 cut(s)	944, 976, 1060, 1092, 1347, 1379
FaqI	GGGAC	4 cut(s)	280, 1007, 1074, 1310
FatI	CATG	7 cut(s)	459, 1450, 1500, 2170, 2290, 2509, 2548
FauI	CCCGC	1 cut(s)	960
FbaI	TGATCA	2 cut(s)	1765, 2401
FblI	GTMKAC	1 cut(s)	802
FokI	GGATG	7 cut(s)	355, 1642, 1659, 1995, 2036, 2312, 2701
FriOI	GRGCYC	2 cut(s)	1845, 2764
FspBI	CTAG	2 cut(s)	761, 818
GlaI	GCGC	4 cut(s)	11, 40, 88, 2106
GsaI	CCCAGC	2 cut(s)	817, 922
GsuI	CTGGAG	1 cut(s)	1546
HaeII	RGCGCY	2 cut(s)	42, 90
HapII	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1221, 2019, 2768
HgaI	GACGC	2 cut(s)	213, 433
HhaI	GCGC	4 cut(s)	12, 41, 89, 2107
Hin1I	GRCGYC	2 cut(s)	87, 224
Hin1II	CATG	7 cut(s)	463, 1454, 1504, 2174, 2294, 2513, 2552
Hin6I	GCGC	4 cut(s)	10, 39, 87, 2105
HinP1I	GCGC	4 cut(s)	10, 39, 87, 2105
HincII	GTYRAC	3 cut(s)	183, 1286, 2461
HindII	GTYRAC	3 cut(s)	183, 1286, 2461
HinfI	GANTC	9 cut(s)	94, 100, 799, 1175, 1358, 1775, 2517, 2571, 2711
HpaII	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1221, 2019, 2768
HphI	GGTGA	8 cut(s)	250, 326, 403, 776, 886, 961, 2105, 2720
Hpy188I	TCNGA	9 cut(s)	99, 249, 293, 421, 700, 2155, 2421, 2719, 2759
Hpy99I	CGWCG	5 cut(s)	199, 202, 229, 232, 2233
HpyAV	CCTTC	9 cut(s)	226, 761, 1900, 2152, 2212, 2258, 2304, 2327, 2774
HpyCH4IV	ACGT	4 cut(s)	330, 1288, 2354, 2618
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 69, 465, 1154, 1163, 1201, 2054, 2666, 2687
HpyF3I	CTNAG	9 cut(s)	158, 683, 738, 879, 1697, 1722, 1830, 1837, 2154
HpySE526I	ACGT	4 cut(s)	330, 1288, 2354, 2618
Hsp92I	GRCGYC	2 cut(s)	87, 224
Hsp92II	CATG	7 cut(s)	463, 1454, 1504, 2174, 2294, 2513, 2552
HspAI	GCGC	4 cut(s)	10, 39, 87, 2105
KasI	GGCGCC	1 cut(s)	86
Kpn2I	TCCGGA	1 cut(s)	2767
KroI	GCCGGC	2 cut(s)	24, 220
KroNI	GCCGGC	2 cut(s)	26, 222
Ksp22I	TGATCA	2 cut(s)	1765, 2401
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	4 cut(s)	145, 172, 1201, 1994
Lsp1109I	GCAGC	4 cut(s)	535, 557, 2057, 2119
LweI	GCATC	6 cut(s)	377, 1927, 1944, 2119, 2290, 2386
MabI	ACCWGGT	1 cut(s)	2446
MaeI	CTAG	2 cut(s)	761, 818
MaeII	ACGT	4 cut(s)	330, 1288, 2354, 2618
MaeIII	GTNAC	9 cut(s)	346, 874, 1258, 1963, 2002, 2077, 2286, 2350, 2708
MboII	GAAGA	8 cut(s)	262, 475, 549, 964, 1022, 1094, 1801, 1963
MfeI	CAATTG	3 cut(s)	1212, 2040, 2094
MflI	RGATCY	3 cut(s)	378, 851, 2134
MhlI	GDGCHC	5 cut(s)	1845, 2633, 2692, 2749, 2764
MlsI	TGGCCA	2 cut(s)	1153, 2071
MluNI	TGGCCA	2 cut(s)	1153, 2071
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	3 cut(s)	94, 808, 2705
Mox20I	TGGCCA	2 cut(s)	1153, 2071
MreI	CGCCGGCG	1 cut(s)	220
MroI	TCCGGA	1 cut(s)	2767
MroNI	GCCGGC	2 cut(s)	24, 220
MscI	TGGCCA	2 cut(s)	1153, 2071
MslI	CAYNNNNRTG	6 cut(s)	342, 872, 1455, 2115, 2118, 2547
Msp20I	TGGCCA	2 cut(s)	1153, 2071
MspA1I	CMGCKG	2 cut(s)	122, 548
MspCI	CTTAAG	1 cut(s)	1892
MspI	CCGG	8 cut(s)	25, 36, 90, 146, 221, 1221, 2019, 2768
MspR9I	CCNGG	8 cut(s)	91, 308, 503, 656, 1677, 2020, 2448, 2522
MunI	CAATTG	3 cut(s)	1212, 2040, 2094
MvaI	CCWGG	6 cut(s)	308, 503, 656, 1677, 2448, 2522
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	9 cut(s)	21, 69, 465, 1154, 1163, 1201, 2054, 2666, 2687
NaeI	GCCGGC	2 cut(s)	26, 222
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	2 cut(s)	91, 2020
NgoMIV	GCCGGC	2 cut(s)	24, 220
NlaIII	CATG	7 cut(s)	463, 1454, 1504, 2174, 2294, 2513, 2552
NlaIV	GGNNCC	2 cut(s)	88, 141
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	5 cut(s)	874, 1258, 1963, 2077, 2708
PaeR7I	CTCGAG	1 cut(s)	1419
PaqCI	CACCTGC	1 cut(s)	2665
PciSI	GCTCTTC	1 cut(s)	458
PdiI	GCCGGC	2 cut(s)	26, 222
PfeI	GAWTC	6 cut(s)	94, 1175, 1358, 1775, 2517, 2571
Pfl23II	CGTACG	1 cut(s)	2619
PflMI	CCANNNNNTGG	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	1675
Ple19I	CGATCG	1 cut(s)	2639
PleI	GAGTC	3 cut(s)	94, 807, 2705
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	3 cut(s)	94, 807, 2705
Ppu21I	YACGTR	1 cut(s)	2619
PshAI	GACNNNNGTC	1 cut(s)	1458
PsiI	TTATAA	2 cut(s)	1367, 1947
Psp1406I	AACGTT	1 cut(s)	2354
Psp6I	CCWGG	6 cut(s)	306, 501, 654, 1675, 2446, 2520
PspFI	CCCAGC	2 cut(s)	813, 918
PspGI	CCWGG	6 cut(s)	306, 501, 654, 1675, 2446, 2520
PspLI	CGTACG	1 cut(s)	2619
PspN4I	GGNNCC	2 cut(s)	88, 141
PspPI	GGNCC	6 cut(s)	397, 406, 482, 746, 999, 2313
PspXI	VCTCGAGB	1 cut(s)	1419
PstI	CTGCAG	4 cut(s)	192, 547, 553, 1051
PstNI	CAGNNNCTG	1 cut(s)	2453
PsuI	RGATCY	3 cut(s)	378, 851, 2134
PvuI	CGATCG	1 cut(s)	2639
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	9 cut(s)	312, 541, 707, 1124, 1662, 1695, 2367, 2452, 2621
RsaNI	GTAC	9 cut(s)	311, 540, 706, 1123, 1661, 1694, 2366, 2451, 2620
RseI	CAYNNNNRTG	6 cut(s)	342, 872, 1455, 2115, 2118, 2547
SapI	GCTCTTC	1 cut(s)	458
Sau96I	GGNCC	6 cut(s)	397, 406, 482, 746, 999, 2313
SchI	GAGTC	3 cut(s)	94, 808, 2705
ScrFI	CCNGG	8 cut(s)	91, 308, 503, 656, 1677, 2020, 2448, 2522
SduI	GDGCHC	5 cut(s)	1845, 2633, 2692, 2749, 2764
SexAI	ACCWGGT	1 cut(s)	2446
SfaNI	GCATC	6 cut(s)	377, 1927, 1944, 2119, 2290, 2386
SfcI	CTRYAG	9 cut(s)	188, 543, 549, 1047, 2086, 2206, 2245, 2481, 2646
SfoI	GGCGCC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	1419
SgrAI	CRCCGGYG	1 cut(s)	220
SinI	GGWCC	3 cut(s)	397, 406, 999
SlaI	CTCGAG	1 cut(s)	1419
SmiMI	CAYNNNNRTG	6 cut(s)	342, 872, 1455, 2115, 2118, 2547
SmlI	CTYRAG	2 cut(s)	1419, 1892
SmoI	CTYRAG	2 cut(s)	1419, 1892
SnaBI	TACGTA	1 cut(s)	2619
SspDI	GGCGCC	1 cut(s)	86
SspI	AATATT	5 cut(s)	835, 1109, 1312, 1874, 2440
SspMI	CTAG	2 cut(s)	761, 818
StyD4I	CCNGG	8 cut(s)	89, 306, 501, 654, 1675, 2018, 2446, 2520
TaiI	ACGT	4 cut(s)	333, 1291, 2357, 2621
TaqI	TCGA	6 cut(s)	43, 230, 583, 1420, 2231, 2686
TaqII	GACCGA	1 cut(s)	1982
TatI	WGTACW	3 cut(s)	705, 1122, 1660
TauI	GCSGC	6 cut(s)	15, 18, 72, 125, 220, 2018
TfiI	GAWTC	6 cut(s)	94, 1175, 1358, 1775, 2517, 2571
TscAI	CASTG	9 cut(s)	192, 715, 913, 1462, 1499, 1838, 1930, 2266, 2581
TseFI	GTSAC	5 cut(s)	874, 1258, 1963, 2077, 2708
TseI	GCWGC	4 cut(s)	545, 548, 2045, 2107
Tsp45I	GTSAC	5 cut(s)	874, 1258, 1963, 2077, 2708
TspDTI	ATGAA	5 cut(s)	476, 1101, 1767, 2136, 2159
TspGWI	ACGGA	3 cut(s)	215, 398, 2078
TspRI	CASTG	9 cut(s)	192, 715, 913, 1462, 1499, 1838, 1930, 2266, 2581
Van91I	CCANNNNNTGG	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	1892
VneI	GTGCAC	2 cut(s)	2629, 2745
VpaK11BI	GGWCC	3 cut(s)	397, 406, 999
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	5 cut(s)	259, 282, 441, 1376, 2486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	1419
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	2 cut(s)	761, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.