Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Forward (+)

34283134 .. 34285867

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGAGAACAAGCCCGATTGAGGAAAGAGATAGAACGATGCTATGAACTGATACACAGACTTGGGAGAGGGGTCGTGTATTTGGGATCTTCAAGGATGGGACCTGATCATTCACATTATTTGCAAGTACTTGAGTTGGGTAGAGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAATCAGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCGTCAAATTACCATCCTTACCTACCTTCAGAAGTTTATCTAACATGCAGGTTTTTCTCTGCTAGAAAACATGGGCTGGTAGATGCTGCAGTAAGAAGCAGTAGTGCTGATAGGACCGCAGTTGTTGCTCTCCCTGGTGGGATTGGTACTCTAGATGAAATTTTTGAGATATTAGCACTAATTCAGCTACAACGGATTGGATCAGAGCTTCCAGTTCCATTCTTGTTGATGAACTATGACTCGTTCTACTCAAAGCTACTCAACTTTCTTGATGATTGTGAGGATTGGGGTACTCTCTCCAAGGGAGAGGTTTCATCTCTGTGGAAGGTTTGTGATAGCAACTCAGAGGCTCTATCTTATTTGTCAGAGTTTTATAACCTACATGCTAGGGACAAAGGTAACCATGAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

232

Amino Acids

25.78

Weight (kDa)

5.84

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	28 - 149	1.3e-06	SLOG cluster4 family
Lysine_decarbox	PF03641	67 - 214	2.4e-24	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	321
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	2 cut(s)	94, 490
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	4 cut(s)	129, 169, 430, 574
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	93
AjnI	CCWGG	2 cut(s)	190, 415
AluBI	AGCT	4 cut(s)	269, 469, 490, 538
AluI	AGCT	4 cut(s)	269, 469, 490, 538
AlwI	GGATC	2 cut(s)	94, 490
ApeKI	GCWGC	2 cut(s)	206, 368
ApoI	RAATTY	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	101, 188, 396
AvaII	GGWCC	3 cut(s)	101, 188, 396
BbvI	GCAGC	2 cut(s)	193, 355
BccI	CCATC	2 cut(s)	91, 303
BciT130I	CCWGG	2 cut(s)	192, 417
BclI	TGATCA	1 cut(s)	106
BfaI	CTAG	3 cut(s)	345, 434, 669
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	207, 369
BlsI	GCNGC	2 cut(s)	208, 370
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	192, 417
Bme18I	GGWCC	3 cut(s)	101, 188, 396
BmgT120I	GGNCC	3 cut(s)	101, 188, 396
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	192, 417
BmsI	GCATC	3 cut(s)	29, 193, 355
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	191, 415, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	192, 417
BseDI	CCNNGG	3 cut(s)	191, 415, 582
BseGI	GGATG	3 cut(s)	102, 208, 295
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	193, 355
BslFI	GGGAC	2 cut(s)	114, 686
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmFI	GGGAC	2 cut(s)	114, 686
Bsp143I	GATC	3 cut(s)	86, 106, 482
BspACI	CCGC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	638
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	2 cut(s)	94, 490
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	191, 415, 582
BssMI	GATC	3 cut(s)	86, 106, 482
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	192, 417
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	228, 271
BstDEI	CTNAG	1 cut(s)	625
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	102, 208, 295
BstKTI	GATC	3 cut(s)	89, 109, 485
BstMBI	GATC	3 cut(s)	86, 106, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 407
BstNI	CCWGG	2 cut(s)	192, 417
BstNSI	RCATGY	2 cut(s)	330, 668
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	190, 415
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	193, 355
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	102, 208, 295
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	228, 271
Cfr13I	GGNCC	3 cut(s)	101, 188, 396
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	4 cut(s)	128, 168, 429, 573
CviAII	CATG	5 cut(s)	174, 327, 353, 665, 686
CviJI	RGCY	9 cut(s)	14, 185, 196, 269, 358, 469, 490, 538, 632
CviKI_1	RGCY	9 cut(s)	14, 185, 196, 269, 358, 469, 490, 538, 632
CviQI	GTAC	4 cut(s)	128, 168, 429, 573
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	3 cut(s)	88, 108, 484
DpnII	GATC	3 cut(s)	86, 106, 482
Eco130I	CCWWGG	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	101, 188, 396
Eco57I	CTGAAG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	190, 415
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	5 cut(s)	177, 330, 356, 668, 689
FaiI	YATR	8 cut(s)	45, 175, 328, 354, 519, 657, 666, 687
FaqI	GGGAC	2 cut(s)	114, 686
FatI	CATG	5 cut(s)	173, 326, 352, 664, 685
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	207, 369
FokI	GGATG	3 cut(s)	109, 215, 282
Fsp4HI	GCNGC	2 cut(s)	207, 369
FspBI	CTAG	3 cut(s)	345, 434, 669
GluI	GCNGC	2 cut(s)	207, 369
HgaI	GACGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	177, 330, 356, 668, 689
HinfI	GANTC	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	313, 487, 628, 649
Hpy188III	TCNNGA	2 cut(s)	434, 551
HpyAV	CCTTC	2 cut(s)	318, 601
HpyCH4V	TGCA	5 cut(s)	124, 152, 226, 330, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 407
HpyF3I	CTNAG	1 cut(s)	625
Hsp92II	CATG	5 cut(s)	177, 330, 356, 668, 689
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	86, 106, 482
Lsp1109I	GCAGC	2 cut(s)	193, 355
LweI	GCATC	3 cut(s)	29, 193, 355
MaeI	CTAG	3 cut(s)	345, 434, 669
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	3 cut(s)	88, 108, 484
MboI	GATC	3 cut(s)	86, 106, 482
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	3 cut(s)	289, 441, 462
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	5 cut(s)	15, 62, 556, 583, 622
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	601
MspR9I	CCNGG	2 cut(s)	192, 417
MvaI	CCWGG	2 cut(s)	192, 417
MwoI	GCNNNNNNNGC	2 cut(s)	227, 407
NdeII	GATC	3 cut(s)	86, 106, 482
NlaIII	CATG	5 cut(s)	177, 330, 356, 668, 689
NlaIV	GGNNCC	1 cut(s)	102
NspI	RCATGY	2 cut(s)	330, 668
PflFI	GACNNNGTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	208, 370
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	190, 415
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	190, 415
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	101, 188, 396
PspPPI	RGGWCCY	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	283
RsaI	GTAC	4 cut(s)	129, 169, 430, 574
RsaNI	GTAC	4 cut(s)	128, 168, 429, 573
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	207, 369
Sau3AI	GATC	3 cut(s)	86, 106, 482
Sau96I	GGNCC	3 cut(s)	101, 188, 396
ScaI	AGTACT	1 cut(s)	129
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	192, 417
SfaNI	GCATC	3 cut(s)	29, 193, 355
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	3 cut(s)	101, 188, 396
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	289, 441, 462
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	3 cut(s)	345, 434, 669
StyD4I	CCNGG	2 cut(s)	190, 415
StyI	CCWWGG	1 cut(s)	582
TasI	AATT	3 cut(s)	289, 441, 462
TatI	WGTACW	2 cut(s)	127, 167
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	2 cut(s)	206, 368
TspDTI	ATGAA	5 cut(s)	60, 162, 453, 527, 585
TspGWI	ACGGA	1 cut(s)	490
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	3 cut(s)	101, 188, 396
XapI	RAATTY	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	2 cut(s)	330, 668
XspI	CTAG	3 cut(s)	345, 434, 669
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.