Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

53519293 .. 53523501

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG402100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGTCCGGACGCGGCAGCCGAGGCAGGCATTATTCCGGCGGTCGCTCTAATCCCTCGCACGGCGGAGGCGGCAGAGGAAGTTTCAGCGGCGGAGGAAGTTCAGGCGCCGCAGCTCCGGCGCCGACTCAAACTCGAGCTTATTTTCCTCCGGCGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGTTGACACTGGAGACGACGACGACGGCCGCCGTGGCTGCTGTGCCGCCGGCGTCGTCGAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGGACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCATCATTACGATGTTACGATTACCCCAGAAGTAGCATCAAAAAAGATCCACAGGGAGGTGATGAACCAACTGGTTCGCTTGTATTCCGAGACGCATTTAGGCAAGAGAATTCCTGCTTATGATGGCATGAAGAGCCTCTATACAGCAGGGCCATTGCCATTTTCCTCCAAGGAGTTTGTTGTCAAATTACTTCCAAATGATGGTCGTGCTGCAGCTGCAGGGTCTTCAACTTCTTCGAAAAGAAAGGATCGAGAGTTTAAAGTGGCTCTCACTTTGGCTAATAAGCCAGACCTTTATCAACTACAACAGTTCTTGCACAGCCAGCGTGTTGAAACGCCACAAGAGGCAATACAAGTCCTTGATATTGTTCTTAGAGCTACACCATCGGAAAAGTACACTGTTGTTGGGAGGTCATTTTTCTCTACTGAGCTTGGGCCAAAAGGCAGTCTAGGTGAAGGTTTGGAATACTGGAGGGGGTTTTACCAAAGTCTACGCCCAACCCAGCTAGGACTTTCCCTTAATATTGATGTGTCAGCAAGATCTTTTTTTGAACCCATTTTGGTGACTGAGTTTCTTGCTAAACATTTTTACCACACTGATCGTTCCAAGCATTTGCCTGATCGTGATTGTATAAAGGTGAAGAAAACCTTGAAGCGGGTCAAGGTAGAAGTTCGTTTAAGGGACTGGACCAAAAACGAAGAAGTTAAGAGAACTTACACAATCAATGGACTATCTGCAGAACCATTGGGACAGTTAAGGTTTACTTGTGAAGATGAGAACACATCAGTTGTGCAATATTATCGTAAGAAGTACAAGATTGATCTCAAATATGTAGCTTGGCCAGCCATTCAAGCTGGCAATGATTCAAAACCCGTTTACTTGCCTATGGAGCTTTGCTCAATTGTTGCTGGACAGAGATACACAAAGAAACTGAATAAAAAACAAGTCACTAACTTACTAAAAGCAACTTGTCAACGTCCTCGGGACAGGGAAAATAATATAACACAGGTTGGTGGAAGAAACACTGTTTTAAATGATGCAATTTATAAGAAGATGCCTGTTGTGACCGATCGCTTGCCCACAATTATATTTGGAGCAGATGTTACTCATCCAGCAGCCGGGGATGACAGTAGCCCATCAATAGCAGCAGTTGTCGCCTCAACGGATTGGCCAGAGGTCACAAACTATAGAGCAATTGTTTCGGCGCAGCATCACCGTGATGAAATAATCAAAGATCTCTATAAATCACAAATATCTGAGAAGGGTTTGGTTCATGGAGGAATGATAAGGGAACTTCTCGTTGCCTTCTATAAACAAAAAAGATTAAAGCCGTCGAGAATTATATTCTACAGAGATGGGGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGTTACATGAGGTGGATGCTATAAGAAGGGTATATAACAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

599

Amino Acids

66.7

Weight (kDa)

9.82

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	104 - 246	2e-37	N-terminal domain of argonaute
ArgoL1	PF08699	257 - 305	1.5e-18	Argonaute linker 1 domain
PAZ	PF02170	330 - 441	2.1e-25	PAZ domain
Piwi	PF02171	459 - 597	3e-30	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1413
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	2 cut(s)	104, 118
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	856
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	5
AclWI	GGATC	2 cut(s)	406, 621
AcoI	YGGCCR	3 cut(s)	231, 1205, 1535
AcsI	RAATTY	2 cut(s)	315, 474
AcyI	GRCGYC	3 cut(s)	105, 119, 257
AfaI	GTAC	2 cut(s)	761, 1178
AfiI	CCNNNNNNNGG	7 cut(s)	59, 296, 346, 421, 566, 1020, 1484
AgsI	TTSAA	7 cut(s)	320, 594, 698, 917, 1018, 1217, 1233
AjnI	CCWGG	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	212, 354, 449
AlwI	GGATC	2 cut(s)	406, 621
Ama87I	CYCGRG	2 cut(s)	132, 1347
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	8 cut(s)	153, 231, 287, 515, 800, 1205, 1535, 1735
ApeKI	GCWGC	9 cut(s)	15, 110, 242, 575, 578, 581, 1481, 1511, 1573
ApoI	RAATTY	2 cut(s)	315, 474
AspLEI	GCGC	3 cut(s)	107, 121, 1573
AspS9I	GGNCC	3 cut(s)	515, 800, 1053
AsuC2I	CCSGG	2 cut(s)	291, 1486
AsuHPI	GGTGA	6 cut(s)	283, 436, 830, 940, 1015, 1571
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	2 cut(s)	132, 1347
AvaII	GGWCC	1 cut(s)	1053
BalI	TGGCCA	2 cut(s)	1207, 1537
BanI	GGYRCC	2 cut(s)	104, 118
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 1493, 1523, 1585
BccI	CCATC	7 cut(s)	190, 375, 482, 560, 757, 1510, 1715
BceAI	ACGGC	4 cut(s)	76, 221, 246, 1681
BcgI	CGANNNNNNTGC	4 cut(s)	1148, 1182, 1548, 1582
BciT130I	CCWGG	1 cut(s)	341
BcnI	CCSGG	2 cut(s)	291, 1486
BcoDI	GTCTC	3 cut(s)	212, 354, 449
BfaI	CTAG	2 cut(s)	815, 872
BfmI	CTRYAG	5 cut(s)	576, 582, 1101, 1552, 1714
BfoI	RGCGCY	2 cut(s)	108, 122
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	2 cut(s)	905, 1600
Bme1390I	CCNGG	3 cut(s)	291, 341, 1486
Bme18I	GGWCC	1 cut(s)	1053
BmeT110I	CYCGRG	2 cut(s)	132, 1347
BmgT120I	GGNCC	3 cut(s)	515, 800, 1053
BmiI	GGNNCC	3 cut(s)	106, 120, 171
BmrFI	CCNGG	3 cut(s)	291, 341, 1486
BmsI	GCATC	5 cut(s)	410, 1393, 1410, 1585, 1759
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	1247, 1279
BpmI	CTGGAG	2 cut(s)	236, 856
Bpu14I	TTCGAA	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	291, 1486
BsaHI	GRCGYC	3 cut(s)	105, 119, 257
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	6 cut(s)	19, 237, 290, 534, 1346, 1485
BsaWI	WCCGGW	2 cut(s)	5, 172
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 1452, 1482
Bsc4I	CCNNNNNNNGG	7 cut(s)	59, 296, 346, 421, 566, 1020, 1484
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	5 cut(s)	219, 441, 839, 1055, 1738
Bse3DI	GCAATG	2 cut(s)	518, 1231
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	6 cut(s)	19, 237, 290, 534, 1346, 1485
BseGI	GGATG	3 cut(s)	1474, 1495, 1774
BseLI	CCNNNNNNNGG	7 cut(s)	59, 296, 346, 421, 566, 1020, 1484
BseMI	GCAATG	2 cut(s)	518, 1231
BseMII	CTCAG	4 cut(s)	176, 783, 924, 1614
BseNI	ACTGG	5 cut(s)	219, 441, 839, 1055, 1738
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 1493, 1523, 1585
BseYI	CCCAGC	1 cut(s)	867
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	4 cut(s)	43, 234, 306, 1438
BshFI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 1537, 1737
BshNI	GGYRCC	2 cut(s)	104, 118
BsiEI	CGRYCG	4 cut(s)	43, 234, 306, 1438
BsiHKCI	CYCGRG	2 cut(s)	132, 1347
BsiSI	CCGG	8 cut(s)	6, 36, 116, 149, 173, 254, 290, 1485
BslFI	GGGAC	4 cut(s)	313, 1061, 1128, 1364
BslI	CCNNNNNNNGG	7 cut(s)	59, 296, 346, 421, 566, 1020, 1484
BsmAI	GTCTC	3 cut(s)	212, 354, 449
BsmBI	CGTCTC	2 cut(s)	212, 449
BsmFI	GGGAC	4 cut(s)	313, 1061, 1128, 1364
BsnI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 1537, 1737
Bso31I	GGTCTC	1 cut(s)	354
BsoBI	CYCGRG	2 cut(s)	132, 1347
Bsp119I	TTCGAA	1 cut(s)	602
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
BspANI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 1537, 1737
BspCNI	CTCAG	4 cut(s)	177, 784, 925, 1615
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	106, 120, 171
BspMAI	CTGCAG	3 cut(s)	580, 586, 1105
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	406, 621
BspQI	GCTCTTC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	104, 118
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	2 cut(s)	518, 1231
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	5 cut(s)	219, 441, 839, 1055, 1738
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	6 cut(s)	19, 237, 290, 534, 1346, 1485
BssMI	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
BssNI	GRCGYC	3 cut(s)	105, 119, 257
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	7 cut(s)	304, 675, 766, 1119, 1393, 1496, 1583
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	3 cut(s)	105, 119, 257
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	6 cut(s)	26, 255, 689, 1209, 1222, 1442
BstDEI	CTNAG	5 cut(s)	185, 737, 792, 933, 1623
BstDSI	CCRYGG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	3 cut(s)	1474, 1495, 1774
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	108, 122
BstHHI	GCGC	3 cut(s)	107, 121, 1573
BstKTI	GATC	8 cut(s)	414, 616, 908, 967, 988, 1189, 1438, 1603
BstMAI	GTCTC	3 cut(s)	212, 354, 449
BstMBI	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
BstMCI	CGRYCG	4 cut(s)	43, 234, 306, 1438
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	289, 339, 1484
BstSFI	CTRYAG	5 cut(s)	576, 582, 1101, 1552, 1714
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 1493, 1523, 1585
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	3 cut(s)	411, 905, 1600
BstYI	RGATCY	3 cut(s)	411, 905, 1600
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 1537, 1737
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	1474, 1495, 1774
BtsIMutI	CAGTG	5 cut(s)	212, 762, 960, 1389, 1735
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	6 cut(s)	26, 255, 689, 1209, 1222, 1442
CfoI	GCGC	3 cut(s)	107, 121, 1573
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	515, 800, 1053
CseI	GACGC	3 cut(s)	18, 246, 466
Csp6I	GTAC	2 cut(s)	760, 1177
CviAII	CATG	3 cut(s)	493, 1640, 1760
CviQI	GTAC	2 cut(s)	760, 1177
DdeI	CTNAG	5 cut(s)	185, 737, 792, 933, 1623
DinI	GGCGCC	2 cut(s)	106, 120
DpnI	GATC	8 cut(s)	413, 615, 907, 966, 987, 1188, 1437, 1602
DpnII	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
DraI	TTTAAA	2 cut(s)	625, 1398
EaeI	YGGCCR	3 cut(s)	231, 1205, 1535
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	2 cut(s)	78, 105
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	1053
Eco52I	CGGCCG	1 cut(s)	231
Eco88I	CYCGRG	2 cut(s)	132, 1347
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	534
EgeI	GGCGCC	2 cut(s)	106, 120
EheI	GGCGCC	2 cut(s)	106, 120
ErhI	CCWWGG	1 cut(s)	534
Esp3I	CGTCTC	2 cut(s)	212, 449
FaeI	CATG	3 cut(s)	496, 1643, 1763
FalI	AAGNNNNNCTT	4 cut(s)	998, 1030, 1114, 1146
FaqI	GGGAC	4 cut(s)	313, 1061, 1128, 1364
FatI	CATG	3 cut(s)	492, 1639, 1759
FauI	CCCGC	1 cut(s)	1014
FblI	GTMKAC	1 cut(s)	856
FokI	GGATG	3 cut(s)	1461, 1502, 1781
FspBI	CTAG	2 cut(s)	815, 872
GlaI	GCGC	3 cut(s)	106, 120, 1572
GsaI	CCCAGC	1 cut(s)	871
GsuI	CTGGAG	2 cut(s)	236, 856
HaeII	RGCGCY	2 cut(s)	108, 122
HaeIII	GGCC	8 cut(s)	155, 233, 289, 517, 802, 1207, 1537, 1737
HapII	CCGG	8 cut(s)	6, 36, 116, 149, 173, 254, 290, 1485
HgaI	GACGC	3 cut(s)	18, 246, 466
HhaI	GCGC	3 cut(s)	107, 121, 1573
Hin1I	GRCGYC	3 cut(s)	105, 119, 257
Hin1II	CATG	3 cut(s)	496, 1643, 1763
Hin6I	GCGC	3 cut(s)	105, 119, 1571
HinP1I	GCGC	3 cut(s)	105, 119, 1571
HincII	GTYRAC	2 cut(s)	210, 1340
HindII	GTYRAC	2 cut(s)	210, 1340
HinfI	GANTC	2 cut(s)	124, 1229
HpaII	CCGG	8 cut(s)	6, 36, 116, 149, 173, 254, 290, 1485
HphI	GGTGA	6 cut(s)	283, 436, 830, 940, 1015, 1571
Hpy166II	GTNNAC	6 cut(s)	210, 762, 857, 1128, 1243, 1340
Hpy188I	TCNGA	4 cut(s)	326, 454, 754, 1624
Hpy188III	TCNNGA	6 cut(s)	6, 298, 617, 989, 1349, 1701
Hpy8I	GTNNAC	6 cut(s)	210, 762, 857, 1128, 1243, 1340
Hpy99I	CGWCG	6 cut(s)	226, 229, 232, 262, 265, 1702
HpyAV	CCTTC	6 cut(s)	259, 815, 1621, 1681, 1727, 1773
HpyCH4III	ACNGT	7 cut(s)	304, 675, 766, 1119, 1393, 1496, 1583
HpyCH4IV	ACGT	1 cut(s)	1342
HpyCH4V	TGCA	8 cut(s)	346, 353, 578, 584, 682, 1103, 1159, 1406
HpyF3I	CTNAG	5 cut(s)	185, 737, 792, 933, 1623
HpySE526I	ACGT	1 cut(s)	1342
Hsp92I	GRCGYC	3 cut(s)	105, 119, 257
Hsp92II	CATG	3 cut(s)	496, 1643, 1763
HspAI	GCGC	3 cut(s)	105, 119, 1571
KasI	GGCGCC	2 cut(s)	104, 118
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	5 cut(s)	118, 175, 199, 1255, 1460
Lsp1109I	GCAGC	9 cut(s)	27, 122, 229, 562, 568, 590, 1493, 1523, 1585
LweI	GCATC	5 cut(s)	410, 1393, 1410, 1585, 1759
MaeI	CTAG	2 cut(s)	815, 872
MaeII	ACGT	1 cut(s)	1342
MaeIII	GTNAC	7 cut(s)	379, 928, 1312, 1429, 1468, 1543, 1755
MalI	GATC	8 cut(s)	413, 615, 907, 966, 987, 1188, 1437, 1602
MboI	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
MboII	GAAGA	8 cut(s)	508, 582, 591, 1018, 1076, 1148, 1395, 1429
MfeI	CAATTG	2 cut(s)	1266, 1560
MflI	RGATCY	3 cut(s)	411, 905, 1600
MlsI	TGGCCA	2 cut(s)	1207, 1537
MluCI	AATT	8 cut(s)	315, 474, 551, 1266, 1407, 1449, 1560, 1704
MluNI	TGGCCA	2 cut(s)	1207, 1537
Mly113I	GGCGCC	2 cut(s)	105, 119
MlyI	GAGTC	1 cut(s)	118
Mox20I	TGGCCA	2 cut(s)	1207, 1537
MreI	CGCCGGCG	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	253
MscI	TGGCCA	2 cut(s)	1207, 1537
MseI	TTAA	7 cut(s)	624, 885, 1043, 1071, 1121, 1397, 1691
MslI	CAYNNNNRTG	4 cut(s)	375, 926, 1581, 1584
Msp20I	TGGCCA	2 cut(s)	1207, 1537
MspA1I	CMGCKG	2 cut(s)	87, 581
MspI	CCGG	8 cut(s)	6, 36, 116, 149, 173, 254, 290, 1485
MspR9I	CCNGG	3 cut(s)	291, 341, 1486
MunI	CAATTG	2 cut(s)	1266, 1560
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	2 cut(s)	105, 119
NciI	CCSGG	2 cut(s)	291, 1486
NdeII	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	496, 1643, 1763
NlaIV	GGNNCC	3 cut(s)	106, 120, 171
NmeAIII	GCCGAG	2 cut(s)	44, 146
NmuCI	GTSAC	4 cut(s)	928, 1312, 1429, 1543
NspV	TTCGAA	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	1229
PflMI	CCANNNNNTGG	1 cut(s)	566
Ple19I	CGATCG	1 cut(s)	1438
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	2 cut(s)	108, 122
PpsI	GAGTC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	1413
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	106, 120, 171
PspPI	GGNCC	3 cut(s)	515, 800, 1053
PspXI	VCTCGAGB	1 cut(s)	132
PstI	CTGCAG	3 cut(s)	580, 586, 1105
PsuI	RGATCY	3 cut(s)	411, 905, 1600
PvuI	CGATCG	1 cut(s)	1438
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	761, 1178
RsaNI	GTAC	2 cut(s)	760, 1177
RseI	CAYNNNNRTG	4 cut(s)	375, 926, 1581, 1584
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	7 cut(s)	624, 885, 1043, 1071, 1121, 1397, 1691
Sau3AI	GATC	8 cut(s)	411, 613, 905, 964, 985, 1186, 1435, 1600
Sau96I	GGNCC	3 cut(s)	515, 800, 1053
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	291, 341, 1486
SfaNI	GCATC	5 cut(s)	410, 1393, 1410, 1585, 1759
SfcI	CTRYAG	5 cut(s)	576, 582, 1101, 1552, 1714
SfoI	GGCGCC	2 cut(s)	106, 120
Sfr274I	CTCGAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	602
SgrAI	CRCCGGYG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	1053
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	4 cut(s)	375, 926, 1581, 1584
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	8 cut(s)	315, 474, 551, 1266, 1407, 1449, 1560, 1704
SspDI	GGCGCC	2 cut(s)	104, 118
SspI	AATATT	2 cut(s)	889, 1163
SspMI	CTAG	2 cut(s)	815, 872
StyD4I	CCNGG	3 cut(s)	289, 339, 1484
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	7 cut(s)	304, 675, 766, 1119, 1393, 1496, 1583
TaiI	ACGT	1 cut(s)	1345
TaqI	TCGA	5 cut(s)	133, 263, 602, 616, 1700
TaqII	GACCGA	1 cut(s)	1448
TasI	AATT	8 cut(s)	315, 474, 551, 1266, 1407, 1449, 1560, 1704
TatI	WGTACW	2 cut(s)	759, 1176
TauI	GCSGC	7 cut(s)	15, 72, 90, 110, 155, 236, 253
TfiI	GAWTC	1 cut(s)	1229
Tru1I	TTAA	7 cut(s)	624, 885, 1043, 1071, 1121, 1397, 1691
Tru9I	TTAA	7 cut(s)	624, 885, 1043, 1071, 1121, 1397, 1691
TscAI	CASTG	5 cut(s)	219, 769, 967, 1396, 1735
TseFI	GTSAC	4 cut(s)	928, 1312, 1429, 1543
TseI	GCWGC	9 cut(s)	15, 110, 242, 575, 578, 581, 1481, 1511, 1573
Tsp45I	GTSAC	4 cut(s)	928, 1312, 1429, 1543
TspDTI	ATGAA	4 cut(s)	443, 509, 1602, 1628
TspGWI	ACGGA	1 cut(s)	1544
TspRI	CASTG	5 cut(s)	219, 769, 967, 1396, 1735
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	1053
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	2 cut(s)	315, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	856
XspI	CTAG	2 cut(s)	815, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.