Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001300

Physical Location & Seq

Genomic Coordinates Reverse (-)

56250735 .. 56255374

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTTAATGGTAGCACAGTGGATTTCTGGGCGTTTGTAAATTTCTCTGGAATACCCGAAGAATCTAGCGATCACTTTATTAAGGCACTCGTTGCCATGTGCAATAGTAAAGGGATGATGTTCAATTTCAAGTCTTTATTTCCTATGCTACCACGTCATTGTGGGCATATTGAGACGGTTCTCAGATATATTAACAAGCGGTCTGTCCTTACACTTGAGAAGATTGGAGACAGCAAGAGACACCTTCAGTTGCTAATTATCGTTTTGCTTGATGAAAGAGTATCCTATGGTGAGGAGCTAAATATGACCCAAAAGAGTGCTTTCTTGACAGAACTTTTCATTGCATTTCGAGCTTCGATTGGCCAGAAGCCACGCATAATCATATTCTACAGGGATGGTGTCAGTGAAGGGCAGTTTAGCCAAGTTCTGCTCTATGAGATGGATGCGATACGAAAGGCCTGTGCTTCTTTGGAGGAGGGGTATATACCTCCAGTTACTTTTGTTGTGGTACAGAAAAGGCATCACACTCGCCTTTTTCTTGCTGGCAACAAGAGCCATAGGAAATGCAATGTTCTACCAGGTACCATGGTGGATACCAAGATATGTCATCCAACAGAATTTGATTTCTACCTTACTAGCCATGCTGCAATTCAGGGAACCAGTTGCCCTACTCACTATCATGTCCTGTTTGATGAGAACAAGTTCAGTGTTGATGCCTTGCAACAATCTGTGCTACATTTTCATACAAGTATGCTGATTGTTGCACCAATGCTTGATGCTTGTACTGCAGTGCCTCCTGTCTATTACGCTCATCTGGCTGCATCTAGAGGACGCTATTACATTAAGGGTGATGCCTCGAATGATGCTTCTCCAGGTGGCATTATCGCACAGTTCCAGAATCGAGAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoN PAZ Piwi

Protein Analysis

304

Amino Acids

34.33

Weight (kDa)

8.12

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Piwi	PF02171	104 - 282	8e-57	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27880
fragaria_vesca	FvH4_3g30201 FvH4_3g30202
malus_domestica	MD03G1130600.v1.1 MD03G1254500.v1.1 MD11G1152200.v1.1 MD11G1152400.v1.1
prunus_persica	Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1 Prupe.6G115400_v2.0.a1
pyrus_communis	pycom01g05040 pycom11g12470
rosa_chinensis	RchiOBHm_Chr1g0362621 RchiOBHm_Chr5g0055991 RchiOBHm_Chr5g0056001 RchiOBHm_Chr5g0056021 RchiOBHm_Chr5g0056031 RchiOBHm_Chr5g0056051 RchiOBHm_Chr5g0056071 RchiOBHm_Chr5g0056081 RchiOBHm_Chr5g0056091
rosa_laevigata	RLG00000027633 RLG00000035041 RLG00000035044 RLG00000035045 RLG00000035046
rosa_roxburghii	Rroxscaffold_1G00024210 Rroxscaffold_1G00024220
rosa_rugosa	Rorug05G0297000 Rorug05G0297100 Rorug05G0297200 Rorug05G0297300 Rorug05G0297300 Rorug05G0297400
rosa_samantha	Rh1CG289700 Rh1DG302900 Rh5AG368000 Rh5AG368200 Rh5AG368300 Rh5CG401800 Rh5CG402100 Rh5CG402200 Rh5DG391500 Rh5DG391600 Rh5DG391700
rosa_wichuraiana	Rw0G004500 Rw1G027430 Rw5G034540 Rw5G034570 Rw5G034580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	40, 617
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	3 cut(s)	510, 583, 784
AgsI	TTSAA	2 cut(s)	124, 130
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	577, 871
AluBI	AGCT	2 cut(s)	298, 353
AluI	AGCT	2 cut(s)	298, 353
Alw26I	GTCTC	3 cut(s)	167, 222, 232
AoxI	GGCC	2 cut(s)	361, 456
ApeKI	GCWGC	2 cut(s)	644, 818
ApoI	RAATTY	2 cut(s)	40, 617
Asp700I	GAANNNNTTC	1 cut(s)	701
Asp718I	GGTACC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	302, 860
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	631, 805
BccI	CCATC	2 cut(s)	389, 433
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	2 cut(s)	579, 873
BciVI	GTATCC	2 cut(s)	292, 586
BcoDI	GTCTC	3 cut(s)	167, 222, 232
BfaI	CTAG	3 cut(s)	66, 636, 825
BfmI	CTRYAG	2 cut(s)	388, 786
BfuI	GTATCC	2 cut(s)	292, 586
BisI	GCNGC	2 cut(s)	645, 819
BlsI	GCNGC	2 cut(s)	646, 820
Bme1390I	CCNGG	2 cut(s)	579, 873
BmgBI	CACGTC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	583, 658
BmrFI	CCNGG	2 cut(s)	579, 873
BmsI	GCATC	7 cut(s)	433, 529, 703, 766, 830, 841, 853
BpmI	CTGGAG	2 cut(s)	474, 855
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	2 cut(s)	491, 660
Bse3DI	GCAATG	2 cut(s)	339, 574
BseBI	CCWGG	2 cut(s)	579, 873
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	4 cut(s)	120, 400, 448, 607
BseMI	GCAATG	2 cut(s)	339, 574
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	491, 660
BseRI	GAGGAG	2 cut(s)	308, 488
BseXI	GCAGC	2 cut(s)	631, 805
BshFI	GGCC	2 cut(s)	363, 458
BshNI	GGYRCC	1 cut(s)	581
BsmAI	GTCTC	3 cut(s)	167, 222, 232
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	363, 458
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	2 cut(s)	363, 458
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	583, 658
BspMAI	CTGCAG	1 cut(s)	790
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	339, 574
BsrI	ACTGG	2 cut(s)	491, 660
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	579, 873
Bst4CI	ACNGT	3 cut(s)	19, 178, 891
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	4 cut(s)	120, 400, 448, 607
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	3 cut(s)	167, 222, 232
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 350, 552, 785, 815
BstNI	CCWGG	2 cut(s)	579, 873
BstSCI	CCNGG	2 cut(s)	577, 871
BstSFI	CTRYAG	2 cut(s)	388, 786
BstV1I	GCAGC	2 cut(s)	631, 805
BsuI	GTATCC	2 cut(s)	292, 586
BsuRI	GGCC	2 cut(s)	363, 458
BtgI	CCRYGG	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	120, 400, 448, 607
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	4 cut(s)	24, 409, 712, 795
Cac8I	GCNNGC	1 cut(s)	544
CseI	GACGC	1 cut(s)	840
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	3 cut(s)	509, 582, 783
CviAII	CATG	4 cut(s)	97, 586, 641, 680
CviJI	RGCY	9 cut(s)	298, 353, 363, 370, 420, 458, 555, 639, 818
CviKI_1	RGCY	9 cut(s)	298, 353, 363, 370, 420, 458, 555, 639, 818
CviQI	GTAC	3 cut(s)	509, 582, 783
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	577, 871
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	4 cut(s)	100, 589, 644, 683
FatI	CATG	4 cut(s)	96, 585, 640, 679
Fnu4HI	GCNGC	2 cut(s)	645, 819
FokI	GGATG	4 cut(s)	127, 407, 455, 594
Fsp4HI	GCNGC	2 cut(s)	645, 819
FspBI	CTAG	3 cut(s)	66, 636, 825
GluI	GCNGC	2 cut(s)	645, 819
GsuI	CTGGAG	2 cut(s)	474, 855
HaeIII	GGCC	2 cut(s)	363, 458
HgaI	GACGC	1 cut(s)	840
Hin1II	CATG	4 cut(s)	100, 589, 644, 683
HinfI	GANTC	2 cut(s)	62, 898
HphI	GGTGA	2 cut(s)	302, 860
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	5 cut(s)	48, 325, 825, 895, 902
HpyAV	CCTTC	2 cut(s)	254, 401
HpyCH4III	ACNGT	3 cut(s)	19, 178, 891
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	8 cut(s)	102, 344, 567, 647, 721, 764, 788, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 350, 552, 785, 815
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	4 cut(s)	100, 589, 644, 683
KpnI	GGTACC	1 cut(s)	585
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	631, 805
LweI	GCATC	7 cut(s)	433, 529, 703, 766, 830, 841, 853
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	3 cut(s)	66, 636, 825
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	71, 232
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	40, 124, 255, 617, 648
MluNI	TGGCCA	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	7 cut(s)	286, 466, 469, 498, 804, 821, 865
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	4 cut(s)	6, 81, 192, 843
MslI	CAYNNNNRTG	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	579, 873
MvaI	CCWGG	2 cut(s)	579, 873
MwoI	GCNNNNNNNGC	5 cut(s)	92, 350, 552, 785, 815
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	100, 589, 644, 683
NlaIV	GGNNCC	2 cut(s)	583, 658
PceI	AGGCCT	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	62, 898
PkrI	GCNGC	2 cut(s)	646, 820
Psp6I	CCWGG	2 cut(s)	577, 871
PspGI	CCWGG	2 cut(s)	577, 871
PspN4I	GGNNCC	2 cut(s)	583, 658
PstI	CTGCAG	1 cut(s)	790
RsaI	GTAC	3 cut(s)	510, 583, 784
RsaNI	GTAC	3 cut(s)	509, 582, 783
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	6, 81, 192, 843
SatI	GCNGC	2 cut(s)	645, 819
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	579, 873
SetI	ASST	8 cut(s)	157, 246, 300, 355, 490, 583, 633, 877
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	7 cut(s)	433, 529, 703, 766, 830, 841, 853
SfcI	CTRYAG	2 cut(s)	388, 786
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	40, 124, 255, 617, 648
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	3 cut(s)	66, 636, 825
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	577, 871
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	3 cut(s)	19, 178, 891
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	4 cut(s)	349, 356, 857, 901
TasI	AATT	5 cut(s)	40, 124, 255, 617, 648
TatI	WGTACW	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	62, 898
Tru1I	TTAA	4 cut(s)	6, 81, 192, 843
Tru9I	TTAA	4 cut(s)	6, 81, 192, 843
TscAI	CASTG	4 cut(s)	24, 409, 712, 795
TseI	GCWGC	2 cut(s)	644, 818
TspDTI	ATGAA	3 cut(s)	288, 328, 731
TspRI	CASTG	4 cut(s)	24, 409, 712, 795
XapI	RAATTY	2 cut(s)	40, 617
XbaI	TCTAGA	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	3 cut(s)	66, 636, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.